ggKbase home page

RTP_11222018_0_1um_scaffold_1033

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1033_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..440
DNA (438bp) protein (146aa)
Cation diffusion facilitator family transporter n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5K7_ACIDE
cation diffusion facilitator family transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
RTP_11222018_0_1um_scaffold_1033_2
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(454..810)
DNA (357bp) protein (119aa)
Transmembrane protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IYF2_9GAMM
Transmembrane protein {ECO:0000313|EMBL:EGW21174.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
transmembrane protein
RTP_11222018_0_1um_scaffold_1033_3
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(839..1045)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z896_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EXI81845.1}; Flags: Precursor;; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1033_4
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(1035..2555)
DNA (1521bp) protein (507aa)
gamma-glutamyltransferase 1 (EC:2.3.2.2)
Gamma-glutamyltransferase 1 {ECO:0000313|EMBL:AFZ20268.1}; EC=2.3.2.2 {ECO:0000313|EMBL:AFZ20268.1};; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
Gamma-glutamyltransferase 1 n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WJA1_9CYAN
RTP_11222018_0_1um_scaffold_1033_5
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2668..4353)
DNA (1686bp) protein (562aa)
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SJ14_HAHCH
signal transduction protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_11222018_0_1um_scaffold_1033_6
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(4384..4803)
DNA (420bp) protein (140aa)
Response regulator receiver id=4691728 bin=GWA2__Bacteriovorax-rel_49_15 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
response regulator
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
RTP_11222018_0_1um_scaffold_1033_7
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4827..6197)
DNA (1371bp) protein (457aa)
hypothetical protein n=2 Tax=Chlorogloeopsis RepID=UPI000372CED4
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_11222018_0_1um_scaffold_1033_8
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6194..6730)
DNA (537bp) protein (179aa)
Uncharacterized protein n=3 Tax=Caldicellulosiruptor RepID=A4XLU6_CALS8
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_11222018_0_1um_scaffold_1033_9
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6750..6974)
DNA (225bp) protein (75aa)
NAD(FAD)-dependent dehydrogenase n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QY71_SPHPG
NAD(FAD)-dependent dehydrogenase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_11222018_0_1um_scaffold_1033_10
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7203..11162
DNA (3960bp) protein (1320aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AC59_9PROT
RTP_11222018_0_1um_scaffold_1033_11

Not on your lists

11163..11603
DNA (441bp) protein (147aa)
Nitrogen-fixing NifU-like (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QTU8_9ZZZZ
Nitrogen-fixing NifU-like (Modular protein) {ECO:0000313|EMBL:CBI10670.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nitrogen-fixing NifU domain-containing protein
RTP_11222018_0_1um_scaffold_1033_12

Not on your lists

comp(11682..12116)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTU6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10668.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1033_13

Not on your lists

comp(12092..12463)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTU5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10667.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_11222018_0_1um_scaffold_1033_14

Not on your lists

comp(12456..13019)
DNA (564bp) protein (188aa)
Putative RNA polymerase sigma factor n=1 Tax=mine drainage metagenome RepID=E6QTU4_9ZZZZ
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:CBI10666.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ECF subfamily RNA polymerase sigma-24 subunit
RTP_11222018_0_1um_scaffold_1033_15
unknown

Not on your lists

comp(13022..13261)
DNA (240bp) protein (80aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_1033_16

Not on your lists

comp(13261..14208)
DNA (948bp) protein (316aa)
Putative Peptidase S49 n=1 Tax=mine drainage metagenome RepID=E6QTU3_9ZZZZ
Putative Peptidase S49 {ECO:0000313|EMBL:CBI10665.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptidase S49
RTP_11222018_0_1um_scaffold_1033_17

Not on your lists

comp(14256..14912)
DNA (657bp) protein (219aa)
Putative phosphoglycolate phosphatase {ECO:0000313|EMBL:CBI10664.1}; EC=3.1.3.18 {ECO:0000313|EMBL:CBI10664.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative phosphoglycolate phosphatase n=1 Tax=mine drainage metagenome RepID=E6QTU2_9ZZZZ
HAD-superfamily hydrolase
RTP_11222018_0_1um_scaffold_1033_18

Not on your lists

comp(14943..15887)
DNA (945bp) protein (315aa)
Ribosomal large subunit pseudouridine synthase C (RRNA-uridine isomerase C) (RRNA pseudouridylate synthase C) {ECO:0000313|EMBL:CBI10663.1}; EC=5.4.99.- {ECO:0000313|EMBL:CBI10663.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Ribosomal large subunit pseudouridine synthase C (RRNA-uridine isomerase C) (RRNA pseudouridylate synthase C) n=1 Tax=mine drainage metagenome RepID=E6QTU1_9ZZZZ
RTP_11222018_0_1um_scaffold_1033_19
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16416..16553
DNA (138bp) protein (46aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
Ribonuclease E (RNase E) n=1 Tax=mine drainage metagenome RepID=E6QTT9_9ZZZZ
ribonuclease, Rne/Rng family
RTP_11222018_0_1um_scaffold_1033_20

Not on your lists

16501..19146
DNA (2646bp) protein (882aa)
Ribonuclease E (RNase E) {ECO:0000313|EMBL:CBI10661.1}; EC=3.1.4.- {ECO:0000313|EMBL:CBI10661.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rne; ribonuclease E (RNase E) (EC:3.1.4.-)
Ribonuclease E (RNase E) n=1 Tax=mine drainage metagenome RepID=E6QTT9_9ZZZZ
RTP_11222018_0_1um_scaffold_1033_21
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19197..19679)
DNA (483bp) protein (161aa)
Protein tyrosine phosphatase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SFH0_GALCS
protein tyrosine phosphatase
Protein tyrosine phosphatase {ECO:0000313|EMBL:ADL55267.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
RTP_11222018_0_1um_scaffold_1033_22
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19676..20683)
DNA (1008bp) protein (336aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EGV17799.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EGV17799.1};; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI0003479A0F
RTP_11222018_0_1um_scaffold_1033_23
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20817..22865
DNA (2049bp) protein (683aa)
Putative polysaccharide transport system component signal peptide protein (RagA) n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8N954_RALSL
putative polysaccharide transport system component signal peptide protein (ragA)
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Displaying 23 items

View Taxonomy