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RTP_11222018_0_1um_scaffold_1198

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1198_1
unknown

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comp(3..164)
DNA (162bp) protein (54aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_1198_2
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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430..1566
DNA (1137bp) protein (379aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
metX; homoserine O-acetyltransferase (EC:2.3.1.31)
Homoserine O-acetyltransferase (Homoserine O-trans-acetylase) (Homoserine transacetylase) (HTA) n=1 Tax=mine drainage metagenome RepID=E6QSE3_9ZZZZ
RTP_11222018_0_1um_scaffold_1198_3

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1563..2147
DNA (585bp) protein (195aa)
Putative methionine biosynthesis protein MetW n=1 Tax=mine drainage metagenome RepID=E6QSE4_9ZZZZ
Putative methionine biosynthesis protein MetW {ECO:0000313|EMBL:CBI10166.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
methionine biosynthesis protein MetW
RTP_11222018_0_1um_scaffold_1198_4

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2147..3256
DNA (1110bp) protein (370aa)
Putative ABC-type transport system, permease component n=1 Tax=mine drainage metagenome RepID=E6QSE5_9ZZZZ
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:CBI10167.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter permease
RTP_11222018_0_1um_scaffold_1198_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3260..4024
DNA (765bp) protein (255aa)
toluene ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367C5EC
ABC transporter ATP-binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_1198_6

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4017..4961
DNA (945bp) protein (315aa)
Putative ABC-type transport system periplasmic component n=1 Tax=mine drainage metagenome RepID=E6QSE7_9ZZZZ
Putative ABC-type transport system periplasmic component {ECO:0000313|EMBL:CBI10169.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC-type transport system periplasmic component
RTP_11222018_0_1um_scaffold_1198_7

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4958..5563
DNA (606bp) protein (202aa)
Putative lipoprotein n=1 Tax=mine drainage metagenome RepID=E6QSE8_9ZZZZ
Putative lipoprotein {ECO:0000313|EMBL:CBI10170.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_11222018_0_1um_scaffold_1198_8
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5537..6394)
DNA (858bp) protein (286aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; Flags: Precursor;; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Protease HtpX homolog n=2 Tax=Methylovorus RepID=C6X8G5_METSD
M48 family peptidase
RTP_11222018_0_1um_scaffold_1198_9

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comp(6428..7348)
DNA (921bp) protein (307aa)
Methionyl-tRNA formyltransferase {ECO:0000313|EMBL:CBI11235.1}; EC=2.1.2.9 {ECO:0000313|EMBL:CBI11235.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=mine drainage metagenome RepID=E6QVG2_9ZZZZ
RTP_11222018_0_1um_scaffold_1198_10

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comp(7348..7851)
DNA (504bp) protein (168aa)
Peptide deformylase (PDF) (Polypeptide deformylase) {ECO:0000313|EMBL:CBI11234.1}; EC=3.5.1.88 {ECO:0000313|EMBL:CBI11234.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase (PDF) (Polypeptide deformylase) n=1 Tax=mine drainage metagenome RepID=E6QVG1_9ZZZZ
RTP_11222018_0_1um_scaffold_1198_11

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7970..8977
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QVG0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11233.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptidoglycan-binding lysin domain-containing protein
RTP_11222018_0_1um_scaffold_1198_12

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8974..10044
DNA (1071bp) protein (357aa)
Putative DNA protecting protein DprA n=1 Tax=mine drainage metagenome RepID=E6QVF9_9ZZZZ
Putative DNA protecting protein DprA {ECO:0000313|EMBL:CBI11232.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA protecting protein DprA
RTP_11222018_0_1um_scaffold_1198_13

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10063..10527
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QVF8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11231.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1198_14

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10537..12732
DNA (2196bp) protein (732aa)
DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) {ECO:0000313|EMBL:CBI11230.1}; EC=5.99.1.2 {ECO:0000313|EMBL:CBI11230.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) n=1 Tax=mine drainage metagenome RepID=E6QVF7_9ZZZZ
RTP_11222018_0_1um_scaffold_1198_15
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12729..13040
DNA (312bp) protein (104aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CPD3_9RHOB
Displaying 15 items

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