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sw_10_scaffold_1895

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_10_scaffold_1895_1
Halorubrum californiense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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582..938
DNA (357bp) protein (119aa)
TRAM domain-containing protein n=1 Tax=Halorubrum californiensis DSM 19288 RepID=M0DZ24_9EURY
putative RNA-binding protein, contains TRAM domain
TRAM domain-containing protein {ECO:0000313|EMBL:ELZ40756.1}; TaxID=1227465 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum californiensi
sw_10_scaffold_1895_2
Natrinema pallidum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(1032..1439)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9YKP2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY73478.1}; TaxID=1227495 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pallidum DSM 3751.;"
hypothetical protein
sw_10_scaffold_1895_3
Halorubrum tebenquichense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(1601..2269)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Halorubrum tebenquichense DSM 14210 RepID=M0DEZ8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ32744.1}; TaxID=1227485 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum tebenquichense DSM 1
hypothetical protein
sw_10_scaffold_1895_4
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2379..2783
DNA (405bp) protein (135aa)
MarR family transcriptional regulator n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0JY10_9EURY
MarR family transcriptional regulator {ECO:0000313|EMBL:EMA13363.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula am
putative transcriptional regulator
sw_10_scaffold_1895_5
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(2833..3573)
DNA (741bp) protein (247aa)
ABC transporter related protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IDY7_9EURY
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:ERG92683.1}; TaxID=1238424 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloqua
livF2; ABC-type transport system ATP-binding protein (probable substrate branched-chain amino acids)
sw_10_scaffold_1895_6
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(3570..4046)
DNA (477bp) protein (159aa)
livG; ABC-type branched-chain amino acid transport systems, ATP-binding protein I; K01995 branched-chain amino acid transport system ATP-binding protein id=24630391 bin=Haloquadratum_Walsbyi_J07HWQ1 species=Haloquadratum walsbyi genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_Walsbyi_J07HWQ1
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:ERG92682.1}; TaxID=1238424 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloqua
livG; ABC-type branched-chain amino acid transport systems, ATP-binding protein I
sw_10_scaffold_1895_7
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(4407..5399)
DNA (993bp) protein (331aa)
Inner-membrane translocator n=1 Tax=Halobacterium sp. DL1 RepID=G4IDY9_9EURY
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:AHG04853.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source
livM; ABC-type branched-chain amino acid transport systems, permease II
sw_10_scaffold_1895_8
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(5399..6265)
DNA (867bp) protein (289aa)
livH2; branched-chain amino acids ABC transporter permease; K01997 branched-chain amino acid transport system permease protein id=24630389 bin=Haloquadratum_Walsbyi_J07HWQ1 species=Haloquadratum walsbyi genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_Walsbyi_J07HWQ1
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:ERG92680.1}; TaxID=1238424 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloq
livH; ABC-type branched-chain amino acid transport system, permease I
sw_10_scaffold_1895_9
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6277..7629)
DNA (1353bp) protein (451aa)
Extracellular ligand-binding receptor n=1 Tax=Halobacterium sp. DL1 RepID=G4IDZ1_9EURY
ABC transporter {ECO:0000313|EMBL:AHG04851.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1.;"
livJ2; ABC-type transport system periplasmic substrate-binding protein (probable substrate branched-chain amino acids)
sw_10_scaffold_1895_10
unknown

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8245..8430
DNA (186bp) protein (62aa)

This feature has no annotations

sw_10_scaffold_1895_11
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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8430..9026
DNA (597bp) protein (199aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopa
ketopantoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q262_9DELT
sw_10_scaffold_1895_12
unknown

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comp(9215..9388)
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying 12 items

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