ggKbase home page

sw_10_scaffold_1480

Search features with annotation key words

Displaying 21 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_10_scaffold_1480_1
unknown

Not on your lists

comp(1..135)
DNA (135bp) protein (45aa)

This feature has no annotations

sw_10_scaffold_1480_2
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(128..1285)
DNA (1158bp) protein (386aa)
Pyridoxal-phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0EL91_9EURY
Pyridoxal-phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis {ECO:0000313|EMBL:ELZ47189.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales
pyridoxal phosphate-dependent enzyme
sw_10_scaffold_1480_3
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1396..1509
DNA (114bp) protein (38aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ELZ47190.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriense
sw_10_scaffold_1480_4
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1592..2365
DNA (774bp) protein (258aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0EHG4_9EURY
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ELZ47190.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriense
NAD-dependent epimerase/dehydratase
sw_10_scaffold_1480_5

Not on your lists

2473..3546
DNA (1074bp) protein (358aa)
Marine sediment metagenome DNA, contig: S03H2_C00002 {ECO:0000313|EMBL:GAH24926.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
putative carbamoylphosphate synthase large subunit, short form id=3398306 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
sw_10_scaffold_1480_6
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3549..4214)
DNA (666bp) protein (222aa)
phosphosulfolactate synthase (EC:3.1.3.71 4.4.1.19)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LVJ4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA37587.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
sw_10_scaffold_1480_7
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4225..4629)
DNA (405bp) protein (135aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LVV9_9EURY
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EMA37586.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source=
glyoxalase/bleomycin resistance protein/dioxygenase
sw_10_scaffold_1480_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(4626..4871)
DNA (246bp) protein (82aa)
Phosphosulfolactate synthase {ECO:0000313|EMBL:CBH22942.1}; EC=4.4.1.19 {ECO:0000313|EMBL:CBH22942.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodother
phosphosulfolactate synthase n=1 Tax=Salisaeta longa RepID=UPI0003B4A8C5
comA; phosphosulfolactate synthase
sw_10_scaffold_1480_9
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4834..5427)
DNA (594bp) protein (198aa)
(2R)-phospho-3-sulfolactate synthase ComA n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LZP1_9EURY
(2R)-phospho-3-sulfolactate synthase ComA {ECO:0000313|EMBL:EMA37585.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcu
phosphosulfolactate synthase
sw_10_scaffold_1480_10
Methanocaldococcus villosus, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(5517..5846)
DNA (330bp) protein (110aa)
XRE family transcriptional regulator n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6UTN3_9EURY
XRE family transcriptional regulator {ECO:0000313|EMBL:ENN95694.1}; TaxID=1069083 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="M
helix-turn-helix domain-containing protein
sw_10_scaffold_1480_11
unknown

Not on your lists

comp(5843..5986)
DNA (144bp) protein (48aa)

This feature has no annotations

sw_10_scaffold_1480_12
Natrialba magadii, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6189..7346
DNA (1158bp) protein (386aa)
Glycosyl transferase group 1 n=1 Tax=Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) RepID=D3SQM1_NATMM
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADD04509.1}; Group 1 glycosyl transferase {ECO:0000313|EMBL:ELY25166.1}; TaxID=547559 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natria
sw_10_scaffold_1480_13
Halovivax asiaticus, Halovivax, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7395..8810)
DNA (1416bp) protein (472aa)
Polysaccharide biosynthesis protein n=1 Tax=Halovivax asiaticus JCM 14624 RepID=M0BU23_9EURY
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ELZ13898.1}; TaxID=1227490 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halovivax.;" source="Halovivax asiaticus JC
membrane protein involved in the export of O-antigen and teichoic acid
sw_10_scaffold_1480_14
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8969..9943
DNA (975bp) protein (325aa)
Uncharacterized protein n=2 Tax=Haloquadratum walsbyi RepID=Q18GU7_HALWD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ52798.2}; TaxID=362976 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi (strain
sw_10_scaffold_1480_15
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9972..10961)
DNA (990bp) protein (330aa)
Sulfatase n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8DAN9_HALXS
sulfatase
Sulfatase {ECO:0000313|EMBL:AEH36981.1}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source="Halopiger xanaduensis (strain DSM 18323 / JCM 140
sw_10_scaffold_1480_16
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11036..11434)
DNA (399bp) protein (133aa)
Sulfatase n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8DAN9_HALXS
sulfatase
Sulfatase {ECO:0000313|EMBL:AEH36981.1}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source="Halopiger xanaduensis (strain DSM 18323 / JCM 140
sw_10_scaffold_1480_17
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12037..12486
DNA (450bp) protein (150aa)
Transposase IS200-family protein n=2 Tax=Halobacteriaceae RepID=C7NYP4_HALMD
transposase IS200-family protein
Transposase IS200-family protein {ECO:0000313|EMBL:ACV46705.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mu
sw_10_scaffold_1480_18
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12659..13042)
DNA (384bp) protein (128aa)
Putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain n=1 Tax=Natronococcus occultus SP4 RepID=L0K1J4_9EURY
putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
Putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain {ECO:0000313|EMBL:AGB38846.1}; TaxID=694430 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbace
sw_10_scaffold_1480_19
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13529..14845
DNA (1317bp) protein (439aa)
ORC1-type DNA replication protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12VA1_METBU
cdc6; cell division control protein 6
ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="M
sw_10_scaffold_1480_20
Natrialba magadii, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14847..15818)
DNA (972bp) protein (324aa)
Peptidase S24/S26A/S26B n=2 Tax=Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) RepID=L9UXG2_NATMM
peptidase S24/S26A/S26B
Peptidase S24/S26A/S26B, conserved region {ECO:0000313|EMBL:ADD05503.1}; TaxID=547559 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba magadii
sw_10_scaffold_1480_21

Not on your lists

16044..16550
DNA (507bp) protein (169aa)
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase II small subunit {ECO:0000256|HAMAP-Rule:MF_00325}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00325};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00325};; TaxID=1412871 species="Archaea; envir
DNA polymerase II small subunit n=1 Tax=uncultured archaeon A07HR67 RepID=V4XRC4_9ARCH
Displaying 21 items

View Taxonomy