ggKbase home page

sw_10_scaffold_116

Search features with annotation key words

Displaying items 1-30 of 35 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_10_scaffold_116_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(1..1050)
DNA (1050bp) protein (350aa)
Oxidoreductase, Gfo/Idh/MocA family id=24658479 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Oxidoreductase, Gfo/Idh/MocA family
Oxidoreductase, Gfo/Idh/MocA family {ECO:0000313|EMBL:CBH25671.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salin
sw_10_scaffold_116_2
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(1385..2260)
DNA (876bp) protein (292aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJG1_RHOM4
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ACY48619.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rho
sw_10_scaffold_116_3
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(2305..3051)
DNA (747bp) protein (249aa)
Crp/FNR family transcriptional regulator n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SF99_RHOMR
Crp/FNR family transcriptional regulator
Crp/FNR family transcriptional regulator {ECO:0000313|EMBL:AEN73620.1}; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodo
sw_10_scaffold_116_4
unknown

Not on your lists

comp(3068..3238)
DNA (171bp) protein (57aa)

This feature has no annotations

sw_10_scaffold_116_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3503..3793
DNA (291bp) protein (97aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC44538.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
hypothetical protein id=24657045 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
sw_10_scaffold_116_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(3888..5252)
DNA (1365bp) protein (455aa)
hypothetical protein
hypothetical protein id=24658474 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC46351.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(5409..6014)
DNA (606bp) protein (202aa)
hypothetical protein
hypothetical protein id=24658473 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC44139.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6011..6520)
DNA (510bp) protein (170aa)
rfaY; RNA polymerase ECF-type sigma factor
rfaY; RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=24658472 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:ABC46204.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sali
sw_10_scaffold_116_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6723..7988
DNA (1266bp) protein (422aa)
hypothetical protein id=24658471 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC45982.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8087..8779
DNA (693bp) protein (231aa)
ABC transporter, ATP-binding protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HCB0_SALRM
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CBH25665.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sali
sw_10_scaffold_116_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(9255..9545)
DNA (291bp) protein (97aa)
hypothetical protein
hypothetical protein id=24658467 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC46279.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

9863..10993
DNA (1131bp) protein (377aa)
tRNA-dihydrouridine synthase B {ECO:0000313|EMBL:CBH25662.1}; EC=1.-.-.- {ECO:0000313|EMBL:CBH25662.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothe
tRNA-dihydrouridine synthase B n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HCA7_SALRM
dusB; tRNA-dihydrouridine synthase B
sw_10_scaffold_116_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11117..11557
DNA (441bp) protein (147aa)
hypothetical protein
hypothetical protein id=24658453 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH25647.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_14
unknown

Not on your lists

11689..11895
DNA (207bp) protein (69aa)

This feature has no annotations

sw_10_scaffold_116_15
GWF2_Melainabacteria_37_15_curated, Melainabacteria, Bacteria

Not on your lists

11956..12267
DNA (312bp) protein (104aa)
Putative uncharacterized protein id=3523688 bin=GWF2_Melainabacteria_37_15 species=Methanoplanus limicola genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
hypothetical protein Tax=GWF2_Melainabacteria_37_15_curated
hypothetical protein
sw_10_scaffold_116_16
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12264..12476
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B38BA0
Uncharacterized protein {ECO:0000313|EMBL:KHD08110.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomarg
hypothetical protein
sw_10_scaffold_116_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

12557..13045
DNA (489bp) protein (163aa)
hypothetical protein
hypothetical protein id=24658452 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC46188.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(13036..14481)
DNA (1446bp) protein (482aa)
hypothetical protein
hypothetical protein id=24658451 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein family (UPF0089) {ECO:0000313|EMBL:ABC46165.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="
sw_10_scaffold_116_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(14800..16017)
DNA (1218bp) protein (406aa)
hypothetical protein
hypothetical protein id=24658450 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC45354.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(16149..17081)
DNA (933bp) protein (311aa)
hypothetical protein
hypothetical protein id=24658449 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH25640.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(17132..17908)
DNA (777bp) protein (259aa)
ABC transporter, ATP-binding protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2RZN1_SALRD
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ABC45736.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sali
sw_10_scaffold_116_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(18097..18849)
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Salinibacter ruber RepID=D5HC83_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25638.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

19011..20390
DNA (1380bp) protein (460aa)
DNA repair protein radA n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2RZN3_SALRD
radA; DNA repair protein RadA
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ru
sw_10_scaffold_116_24
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20684..21289
DNA (606bp) protein (202aa)
rpoE; RNA polymerase sigma-E factor
rpoE; RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=24658445 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
RNA polymerase sigma-E factor {ECO:0000313|EMBL:CBH25636.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
sw_10_scaffold_116_25
Salinibacter_ruber, Salinibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21340..21906
DNA (567bp) protein (189aa)
id=24658444 bin=Salinibacter_ruber tax=Salinibacter_ruber
id=24658444 bin=Salinibacter_ruber tax=Salinibacter_ruber
sw_10_scaffold_116_26
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

21973..22710
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2RZN5_SALRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC46159.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_27
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

22883..24169
DNA (1287bp) protein (429aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CBH25634.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CBH25634.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rho
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HC79_SALRM
amiB; N-acetylmuramoyl-L-alanine amidase
sw_10_scaffold_116_28
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

24266..24814
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HC78_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25633.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_10_scaffold_116_29
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(25033..25431)
DNA (399bp) protein (133aa)
translation initiation inhibitor containig endoribonuclease L-PSP
endoribonuclease L-PSP id=24658440 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Putative translation initiation inhibitor containig endoribonuclease L-PSP {ECO:0000313|EMBL:CBH25632.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodoth
sw_10_scaffold_116_30
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

25641..26789
DNA (1149bp) protein (383aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sed
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HC76_SALRM
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1
Displaying items 1-30 of 35 in total

View Taxonomy