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SW_11_UNK

In projects: SW_11  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 18.10 Longest contig: 206.16 Kbp Bin length: 36.83 Mbp GC content: 60.58 %
Contigs count: 13823 Features count: 48125 rRNAs count: 12 tRNAs count: 554

Genome completeness

megabin RP 48 / 55 MC: 40 BSCG 43 / 51 MC: 37 ASCG 38 / 38 MC: 38
Displaying items 401-450 of 13823 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_11_scaffold_1655
Class: Halobacteria (63.64%)
11 5903 bp 56.12 13.23 76.94
sw_11_scaffold_1101
Class: Halobacteria (72.73%)
11 9828 bp 55.15 18.01 91.61
sw_11_scaffold_5925
Class: Halobacteria (81.82%)
11 7227 bp 72.89 47.29 96.39
sw_11_scaffold_1401 11 9098 bp 57.76 10.82 93.25
sw_11_scaffold_2227
Class: Halobacteria (72.73%)
11 7035 bp 59.49 22.89 79.32
sw_11_scaffold_1517
Order: Halobacteriales (63.64%)
11 13867 bp 57.90 11.69 93.22
sw_11_scaffold_709
Class: Halobacteria (90.91%)
11 7170 bp 67.11 30.25 84.14
sw_11_scaffold_10568
Order: Halobacteriales (60%)
10 5260 bp 66.84 11.01 91.48
sw_11_scaffold_502
Genus: Natronomonas (50%)
10 8880 bp 60.87 24.20 93.78
sw_11_scaffold_2233
Order: Halobacteriales (60%)
10 6332 bp 56.49 13.44 73.72
sw_11_scaffold_5944 10 5557 bp 57.03 7.81 58.57
sw_11_scaffold_917
Domain: Bacteria (90%)
10 8330 bp 43.39 7.11 86.94
sw_11_scaffold_1541
Class: Halobacteria (60%)
10 9358 bp 62.36 10.18 94.80
sw_11_scaffold_3211 10 4952 bp 63.07 18.94 89.50
sw_11_scaffold_2356
Order: Halobacteriales (60%)
10 8302 bp 63.90 13.49 73.93
sw_11_scaffold_2237
Species: halophilic archaeon J07HX64 (50%)
10 10264 bp 71.46 12.99 84.41
sw_11_scaffold_3421
Order: Halobacteriales (70%)
10 6729 bp 68.96 37.98 81.50
sw_11_scaffold_5263
Species: Salinibacter ruber (50%)
10 10260 bp 59.79 9.94 66.75
sw_11_scaffold_826
Species: Salinibacter ruber (60%)
10 6656 bp 65.53 17.58 76.58
sw_11_scaffold_3883
Class: Halobacteria (60%)
10 8198 bp 64.61 17.85 77.10
sw_11_scaffold_4344
Domain: Bacteria (50%)
10 9987 bp 52.45 9.53 53.80
sw_11_scaffold_4808
Order: Halobacteriales (50%)
10 6695 bp 69.81 44.57 84.11
sw_11_scaffold_1128
Species: Haloarcula japonica (50%)
10 9593 bp 63.98 19.39 77.18
sw_11_scaffold_343
Order: Bacteroidetes Order II. Incertae sedis (60%)
10 11230 bp 63.87 16.63 89.95
sw_11_scaffold_2741 10 7873 bp 50.03 10.57 80.25
sw_11_scaffold_1428
Class: Halobacteria (60%)
10 6092 bp 65.59 22.52 77.86
sw_11_scaffold_3665 10 5181 bp 53.99 7.28 58.48
sw_11_scaffold_1758
Species: Haloarcula japonica (60%)
10 8974 bp 63.06 24.56 84.43
sw_11_scaffold_413
Domain: Bacteria (80%)
10 9216 bp 59.58 14.58 76.56
sw_11_scaffold_5974
Order: Natrialbales (50%)
10 7575 bp 64.58 10.43 76.79
sw_11_scaffold_1760
Phylum: Bacteroidetes (60%)
10 8784 bp 62.76 37.97 76.54
sw_11_scaffold_1498
Class: Halobacteria (80%)
10 8673 bp 66.59 33.60 91.04
sw_11_scaffold_4593
Order: Halobacteriales (50%)
10 7867 bp 60.49 11.12 68.07
sw_11_scaffold_1429 10 7286 bp 59.80 17.40 77.37
sw_11_scaffold_2492
Phylum: Proteobacteria (50%)
10 9405 bp 66.27 31.12 72.98
sw_11_scaffold_1314
Class: Halobacteria (80%)
10 7328 bp 67.84 23.19 92.32
sw_11_scaffold_2372
Class: Halobacteria (70%)
10 5182 bp 58.09 16.69 71.32
sw_11_scaffold_2256
Species: Salinibacter ruber (80%)
10 10192 bp 63.46 18.30 87.27
sw_11_scaffold_2373
Order: Halobacteriales (60%)
10 7499 bp 65.64 32.19 71.61
sw_11_scaffold_391
Domain: Bacteria (60%)
10 12566 bp 63.89 22.71 79.81
sw_11_scaffold_7367
Species: halophilic archaeon J07HX64 (60%)
10 8395 bp 67.80 11.57 77.44
sw_11_scaffold_2376 10 8428 bp 69.28 18.79 93.40
sw_11_scaffold_2625
Class: Halobacteria (70%)
10 9501 bp 63.32 12.02 92.80
sw_11_scaffold_507
Species: Salinibacter ruber (60%)
10 12554 bp 67.27 49.57 83.66
sw_11_scaffold_4151
Domain: Bacteria (80%)
10 4549 bp 60.96 33.30 75.77
sw_11_scaffold_715
Order: Halobacteriales (50%)
10 10849 bp 69.20 32.66 81.08
sw_11_scaffold_3926
Class: Halobacteria (50%)
10 5501 bp 64.15 10.63 82.13
sw_11_scaffold_554
Domain: Bacteria (60%)
10 7999 bp 61.36 27.33 63.01
sw_11_scaffold_1685
Species: halophilic archaeon J07HX64 (70%)
10 9505 bp 66.63 12.06 80.84
sw_11_scaffold_2047
Class: Halobacteria (70%)
10 8557 bp 68.21 11.56 85.54
Displaying items 401-450 of 13823 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.