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sw_11_scaffold_578

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_578_1
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(1..2019)
DNA (2019bp) protein (673aa)
Uncharacterized protein n=1 Tax=Saprospira grandis DSM 2844 RepID=J1I2X8_9SPHI
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
hypothetical protein
sw_11_scaffold_578_trna_1
unknown

Not on your lists

comp(2549..2622)
DNA (74bp)
transferRNA
sw_11_scaffold_578_2
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2666..3076)
DNA (411bp) protein (137aa)
Peptidoglycan glycosyltransferase (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] Tax=GWF2_Bacteroidetes_38_335_curated
Peptidoglycan glycosyltransferase id=4524412 bin=GWF2_Bacteroidetes_38_335 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
membrane carboxypeptidase/penicillin-binding protein
sw_11_scaffold_578_3
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3147..4856)
DNA (1710bp) protein (570aa)
glycosyl transferase n=1 Tax=Echinicola pacifica RepID=UPI00035EE9C2
membrane carboxypeptidase/penicillin-binding protein
Membrane carboxypeptidase/penicillin-binding protein {ECO:0000313|EMBL:AGA76896.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echin
sw_11_scaffold_578_4
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4862..7636)
DNA (2775bp) protein (925aa)
Putative uncharacterized protein id=4395472 bin=GWF2_Bacteroidetes_35_48 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
hypothetical protein Tax=GWF2_Bacteroidetes_35_48_curated
gliding motility protein SprE
sw_11_scaffold_578_5
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists

7846..8514
DNA (669bp) protein (223aa)
Putative membrane peptidase n=1 Tax=Kordia algicida OT-1 RepID=A9DS24_9FLAO
metalloendopeptidase-like membrane protein Tax=CG_Bacteroid_01
metalloendopeptidase-like membrane protein
sw_11_scaffold_578_6
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8736..9188
DNA (453bp) protein (151aa)
Integral membrane protein CcmA involved in cell shape determination n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KWY1_SOLCM
Integral membrane protein CcmA involved in cell shape determination
Integral membrane protein CcmA involved in cell shape determination {ECO:0000313|EMBL:AFD08310.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriac
sw_11_scaffold_578_7
unknown

Not on your lists

comp(9196..9294)
DNA (99bp) protein (33aa)

This feature has no annotations

sw_11_scaffold_578_8
unknown

Not on your lists

comp(9411..9563)
DNA (153bp) protein (51aa)

This feature has no annotations

sw_11_scaffold_578_9
Haemophilus paraphrohaemolyticus, Haemophilus, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9776..10705
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Haemophilus paraphrohaemolyticus HK411 RepID=I2NJ00_9PAST
Uncharacterized protein {ECO:0000313|EMBL:EIG25811.1}; TaxID=1095743 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus.;" source="Haemophilus paraphr
sw_11_scaffold_578_10
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10857..11051
DNA (195bp) protein (65aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ94_9BACT
3-oxoacyl-ACP synthase
sw_11_scaffold_578_11
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11042..11854
DNA (813bp) protein (271aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ94_9BACT
3-oxoacyl-ACP synthase
sw_11_scaffold_578_12
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11990..12616)
DNA (627bp) protein (209aa)
hypothetical protein id=14624215 bin=bin5_DeltaP species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein Tax=CSP1_8_Deltaproteobacteria
hypothetical protein
sw_11_scaffold_578_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13133..15628
DNA (2496bp) protein (832aa)
PAS fold family n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VJD2_9CYAN
PAS domain S-box {ECO:0000313|EMBL:KCZ72922.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source=
multi-sensor signal transduction histidine kinase
sw_11_scaffold_578_14
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


15777..16166
DNA (390bp) protein (130aa)
30S ribosomal protein S6 n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JWL6_9BACT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7
30S ribosomal protein S6
sw_11_scaffold_578_15
Bacteroides sp. CAG:144, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


16166..16435
DNA (270bp) protein (90aa)
30S ribosomal protein S18 n=1 Tax=Marinilabilia salmonicolor RepID=UPI000299D2AF
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262736 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="B
30S ribosomal protein S18
sw_11_scaffold_578_16
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


16452..16898
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00034992DD
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeo
50S ribosomal protein L9
sw_11_scaffold_578_17
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

17352..18836
DNA (1485bp) protein (495aa)
Aminopeptidase N n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R408_OWEHD
aminopeptidase N Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
aminopeptidase N
sw_11_scaffold_578_18
Nonlabens marinus, Nonlabens, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19525..20412
DNA (888bp) protein (296aa)
hbdA; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-Hydroxybutyryl-CoA dehydrogenase n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L4T2_ZOBGA
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:BAO56034.1}; TaxID=1454201 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens.;" source="Nonlabens ma
sw_11_scaffold_578_19
unknown

Not on your lists

20648..20890
DNA (243bp) protein (81aa)

This feature has no annotations

sw_11_scaffold_578_20
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20983..22248)
DNA (1266bp) protein (422aa)
Efflux transporter, RND family, MFP subunit id=3883909 bin=GWF2_Bacteroidetes_33_16 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein Tax=GWE2_Bacteroidetes_32_14_curated
efflux transporter, rnd family, mfp subunit
sw_11_scaffold_578_21
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

comp(22295..22969)
DNA (675bp) protein (225aa)
Outer membrane protein id=2191658 bin=GWE2_Bacteroidetes_42_42 species=Flexibacter litoralis genus=Flexibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
outer membrane protein Tax=GWF2_Bacteroidetes_43_63_curated
outer membrane efflux protein
sw_11_scaffold_578_22
unknown

Not on your lists

comp(23591..23824)
DNA (234bp) protein (78aa)

This feature has no annotations

sw_11_scaffold_578_23
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24017..24421
DNA (405bp) protein (135aa)
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000373F232
methyltransferase small
Displaying 24 items

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