ggKbase | organisms

SW_11_Chlorophyta_54_6

In projects: SW_11

Consensus taxonomy: Chlorophyta → Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_11_UNK

Properties

Avg. coverage: 5.51 Longest contig: 3.75 Kbp Bin length: 583.86 Kbp GC content: 53.62 %

Contigs count: 401 Features count: 675 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 MC: 1 BSCG 3 / 51 MC: 1 ASCG 6 / 38 MC: 1

Displaying items 51-100 of 401 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_11_scaffold_12188 Species: Micromonas pusilla (50%)	2	1229 bp	54.92	5.45	83.97
sw_11_scaffold_10114 Species: Ostreococcus tauri (50%)	2	1407 bp	53.30	5.47	97.01
sw_11_scaffold_14493 Species: Triticum aestivum (50%)	2	1084 bp	52.49	4.89	75.00
sw_11_scaffold_13111 Species: Oryza glaberrima (50%)	2	1169 bp	59.88	5.22	98.80
sw_11_scaffold_10809 Species: Auxenochlorella protothecoides (50%)	2	1342 bp	49.55	6.78	77.12
sw_11_scaffold_7797 Species: Oryza sativa (50%)	2	1700 bp	59.41	4.94	68.82
sw_11_scaffold_22423 Species: Glycine max (50%)	2	1505 bp	51.96	5.38	55.22
sw_11_scaffold_11965 Species: Chlorella variabilis (50%)	2	1245 bp	54.86	4.82	77.11
sw_11_scaffold_15190 Species: Cucumis sativus (50%)	2	1047 bp	53.39	4.78	63.32
sw_11_scaffold_14039 Species: Prunus persica (50%)	2	1112 bp	53.78	4.41	99.01
sw_11_scaffold_14272 Species: Tetraselmis sp. GSL018 (50%)	2	1098 bp	49.91	5.10	100.55
sw_11_scaffold_14273 Species: Volvox carteri (50%)	2	1098 bp	49.18	6.10	72.68
sw_11_scaffold_14734 Species: Micromonas sp. RCC299 (50%)	2	1071 bp	56.49	4.76	69.47
sw_11_scaffold_13352 Species: Medicago truncatula (50%)	2	1153 bp	49.70	5.03	58.28
sw_11_scaffold_26112 Species: Ostreococcus tauri (50%)	2	1242 bp	59.58	5.07	95.65
sw_11_scaffold_6193 Species: Auxenochlorella protothecoides (50%)	2	1991 bp	50.43	5.22	100.50
sw_11_scaffold_28848 Species: Micromonas pusilla (50%)	2	1172 bp	50.68	4.78	58.36
sw_11_scaffold_6659 Species: Oryza sativa (50%)	2	1900 bp	59.26	4.37	74.37
sw_11_scaffold_10825 Species: Micromonas sp. RCC299 (50%)	2	1340 bp	60.75	5.22	93.81
sw_11_scaffold_10826 Species: Ostreococcus tauri (50%)	2	1340 bp	52.46	5.82	94.03
sw_11_scaffold_11979 Species: Selaginella moellendorffii (50%)	2	1244 bp	53.30	4.98	78.38
sw_11_scaffold_7584 Species: Micromonas pusilla (50%)	2	1734 bp	52.02	5.31	92.39
sw_11_scaffold_15898 Species: Physcomitrella patens (50%)	2	1700 bp	52.71	5.94	100.06
sw_11_scaffold_8738 Species: Micromonas sp. RCC299 (50%)	2	2795 bp	54.24	4.97	102.08
sw_11_scaffold_13826 Species: Coccomyxa subellipsoidea (50%)	2	2730 bp	50.22	5.86	49.67
sw_11_scaffold_12214 Species: Volvox carteri (50%)	2	1226 bp	54.16	4.98	66.80
sw_11_scaffold_13136 Species: Triticum aestivum (50%)	2	1167 bp	54.84	5.66	64.52
sw_11_scaffold_14060 Species: Micromonas sp. RCC299 (50%)	2	1112 bp	48.38	5.58	94.69
sw_11_scaffold_28952 Species: Brassica oleracea (50%)	2	1178 bp	54.33	5.94	71.82
sw_11_scaffold_13600 Species: Volvox carteri (50%)	2	1138 bp	53.69	6.50	58.52
sw_11_scaffold_5987 Species: Saccharum hybrid cultivar (50%)	2	2532 bp	57.11	5.53	100.71
sw_11_scaffold_11766 Species: Micromonas pusilla (50%)	2	1261 bp	51.55	5.23	84.93
sw_11_scaffold_9213 Species: Tetraselmis sp. GSL018 (50%)	2	1514 bp	54.16	5.42	89.96
sw_11_scaffold_14303 Species: Ulva fasciata (50%)	2	1095 bp	54.89	5.30	87.95
sw_11_scaffold_12461 Species: Micromonas sp. RCC299 (50%)	2	1210 bp	55.37	4.79	91.24
sw_11_scaffold_13844 Species: Glycine soja (50%)	2	2136 bp	53.60	5.38	62.92
sw_11_scaffold_14535 Species: Tetraselmis sp. GSL018 (50%)	2	1082 bp	50.46	5.08	74.58
sw_11_scaffold_8989 Species: Coccomyxa subellipsoidea (50%)	2	1540 bp	53.25	5.39	77.14
sw_11_scaffold_13156 Species: Micromonas pusilla (50%)	2	1166 bp	53.00	5.40	84.91
sw_11_scaffold_13158 Species: Micromonas pusilla (50%)	2	1166 bp	52.66	4.20	83.36
sw_11_scaffold_14775 Species: Micromonas sp. RCC299 (50%)	2	1069 bp	53.41	5.61	75.21
sw_11_scaffold_12471 Species: Theobroma cacao (50%)	2	1209 bp	57.07	5.79	92.06
sw_11_scaffold_11552 Species: Physcomitrella patens (50%)	2	1278 bp	51.17	5.16	85.92
sw_11_scaffold_14317 Species: Micromonas sp. RCC299 (50%)	2	1094 bp	54.48	6.49	72.94
sw_11_scaffold_11553 Species: Tetraselmis sp. GSL018 (50%)	2	1278 bp	54.15	5.87	98.12
sw_11_scaffold_29100 Species: Chlamydomonas reinhardtii (50%)	2	1143 bp	49.52	6.65	58.53
sw_11_scaffold_11786 Species: Ostreococcus tauri (50%)	2	1259 bp	56.47	4.21	95.31
sw_11_scaffold_21571 Species: Ostreococcus tauri (100%)	2	1532 bp	53.39	5.68	80.68
sw_11_scaffold_15935 Species: Triticum aestivum (50%)	2	1012 bp	56.13	5.43	88.64
sw_11_scaffold_9466 Species: Oryza glumipatula (50%)	2	1483 bp	56.04	5.53	54.01

Displaying items 51-100 of 401 in total

SW_11_Chlorophyta_54_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_11_Chlorophyta_54_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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