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SW_11_Chlorophyta_54_6

In projects: SW_11

Consensus taxonomy: Chlorophyta  →  Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_11_UNK

Properties

Avg. coverage: 5.51 Longest contig: 3.75 Kbp Bin length: 583.86 Kbp GC content: 53.62 %
Contigs count: 401 Features count: 675 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 MC: 1 BSCG 3 / 51 MC: 1 ASCG 6 / 38 MC: 1
Displaying items 151-200 of 401 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_11_scaffold_8607
Species: Ostreococcus 'lucimarinus' (50%)
2 1584 bp 53.41 4.99 95.45
sw_11_scaffold_12311
Species: Bathycoccus prasinos (50%)
2 1219 bp 55.54 5.25 80.72
sw_11_scaffold_9991
Species: Coccomyxa subellipsoidea (50%)
2 1422 bp 48.80 5.34 57.81
sw_11_scaffold_10009
Species: Ostreococcus 'lucimarinus' (50%)
2 1420 bp 54.79 5.21 69.93
sw_11_scaffold_25454
Species: Bathycoccus prasinos (50%)
2 1276 bp 58.62 5.80 88.87
sw_11_scaffold_15310
Species: Coccomyxa subellipsoidea (50%)
2 1041 bp 53.12 6.15 69.45
sw_11_scaffold_11627
Species: Micromonas sp. RCC299 (50%)
2 1272 bp 53.77 5.97 102.36
sw_11_scaffold_13009
Species: Bathycoccus prasinos (50%)
2 1175 bp 51.66 6.47 58.72
sw_11_scaffold_6774
Species: Micromonas sp. RCC299 (50%)
2 1877 bp 54.24 5.70 95.10
sw_11_scaffold_21893
Species: Selaginella moellendorffii (50%)
2 1550 bp 53.03 4.90 58.45
sw_11_scaffold_10711
Species: Volvox carteri (50%)
2 1351 bp 49.30 6.74 73.95
sw_11_scaffold_11635
Species: Helicosporidium sp. ATCC 50920 (50%)
2 2045 bp 52.86 5.82 67.78
sw_11_scaffold_14402
Species: Gossypium raimondii (50%)
2 1089 bp 50.69 6.61 81.54
sw_11_scaffold_26796
Species: Oryza sativa (50%)
2 1202 bp 54.83 5.66 98.59
sw_11_scaffold_10025
Species: Ostreococcus tauri (50%)
2 1418 bp 54.80 5.15 87.80
sw_11_scaffold_14634
Species: Tetraselmis sp. GSL018 (50%)
2 1077 bp 50.42 6.87 84.96
sw_11_scaffold_13714
Species: Arundo donax (50%)
2 1132 bp 50.88 4.77 92.23
sw_11_scaffold_26800
Species: Coccomyxa subellipsoidea (50%)
2 1182 bp 55.67 7.45 87.82
sw_11_scaffold_23106
Species: Micromonas sp. RCC299 (50%)
2 1265 bp 55.26 6.17 103.87
sw_11_scaffold_11412
Species: Micromonas pusilla (50%)
2 1290 bp 52.71 6.28 90.00
sw_11_scaffold_23108
Species: Volvox carteri (50%)
2 1616 bp 49.44 5.32 25.99
sw_11_scaffold_18053
Species: Selaginella moellendorffii (50%)
2 2618 bp 49.54 4.39 47.21
sw_11_scaffold_26834
Species: Auxenochlorella protothecoides (50%)
2 1146 bp 53.84 5.76 60.73
sw_11_scaffold_8864
Species: Chlorella variabilis (50%)
2 1555 bp 51.70 5.66 71.77
sw_11_scaffold_17249
Species: Ostreococcus tauri (50%)
2 1378 bp 55.22 7.47 101.23
sw_11_scaffold_11651
Species: Ostreococcus tauri (50%)
2 1269 bp 54.93 5.83 104.26
sw_11_scaffold_12574
Species: Zea mays (50%)
2 1203 bp 54.86 7.23 92.77
sw_11_scaffold_15571
Species: Micromonas sp. RCC299 (50%)
2 1541 bp 49.06 5.06 73.98
sw_11_scaffold_8180
Species: Amborella trichopoda (50%)
2 1643 bp 54.78 4.38 88.01
sw_11_scaffold_24403
Species: Micromonas pusilla (50%)
2 1200 bp 54.17 5.92 104.25
sw_11_scaffold_7720
Species: Micromonas pusilla (50%)
2 1713 bp 53.12 9.22 57.09
sw_11_scaffold_8643
Species: Coccomyxa subellipsoidea (50%)
2 2568 bp 54.71 5.57 60.28
sw_11_scaffold_9335
Species: Chlorella variabilis (50%)
2 1500 bp 47.87 6.20 59.80
sw_11_scaffold_10044
Species: Selaginella moellendorffii (50%)
2 1417 bp 60.34 5.72 94.00
sw_11_scaffold_8186
Species: Micromonas sp. RCC299 (50%)
2 2562 bp 48.32 4.37 63.82
sw_11_scaffold_3809
Species: Ostreococcus 'lucimarinus' (100%)
2 2768 bp 53.72 5.85 91.15
sw_11_scaffold_12584
Species: Bathycoccus prasinos (50%)
2 1203 bp 55.36 4.82 77.81
sw_11_scaffold_20991
Species: Micromonas sp. RCC299 (50%)
2 1410 bp 49.93 5.53 60.21
sw_11_scaffold_12586
Species: Chlamydomonas reinhardtii (50%)
2 1203 bp 52.12 5.49 65.84
sw_11_scaffold_17296
Species: Brachypodium distachyon (50%)
2 1674 bp 54.60 6.33 91.40
sw_11_scaffold_11434
Species: Micromonas pusilla (50%)
2 1288 bp 54.58 5.82 93.87
sw_11_scaffold_4044
Species: Ostreococcus 'lucimarinus' (50%)
2 2654 bp 53.50 6.37 97.10
sw_11_scaffold_26965
Species: Amborella trichopoda (50%)
2 1309 bp 54.32 5.19 61.88
sw_11_scaffold_10749
Species: Bathycoccus prasinos (50%)
2 1347 bp 49.59 5.79 67.26
sw_11_scaffold_10289
Species: Solanum tuberosum (50%)
2 1390 bp 51.58 4.32 56.98
sw_11_scaffold_9353
Species: Micromonas sp. RCC299 (50%)
2 1498 bp 51.94 5.87 48.66
sw_11_scaffold_13295
Species: Chlamydomonas reinhardtii (50%)
2 1157 bp 55.92 5.96 56.27
sw_11_scaffold_10078
Species: Ostreococcus tauri (50%)
2 1412 bp 55.03 4.04 100.50
sw_11_scaffold_8449
Species: Ostreococcus tauri (50%)
2 1605 bp 54.95 4.61 89.91
sw_11_scaffold_12617
Species: Micromonas sp. RCC299 (50%)
2 1201 bp 51.21 5.00 49.21
Displaying items 151-200 of 401 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.