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SW_11_Chlorophyta_54_6

In projects: SW_11

Consensus taxonomy: Chlorophyta  →  Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_11_UNK

Properties

Avg. coverage: 5.51 Longest contig: 3.75 Kbp Bin length: 583.86 Kbp GC content: 53.62 %
Contigs count: 401 Features count: 675 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 MC: 1 BSCG 3 / 51 MC: 1 ASCG 6 / 38 MC: 1
Displaying items 101-150 of 401 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_11_scaffold_13862
Species: Bathycoccus prasinos (50%)
2 1123 bp 57.17 5.43 75.33
sw_11_scaffold_14553
Species: Micromonas sp. RCC299 (50%)
2 1081 bp 51.80 5.46 75.49
sw_11_scaffold_9239
Species: Physcomitrella patens (50%)
2 1512 bp 49.74 5.03 79.76
sw_11_scaffold_11561
Species: Coccomyxa subellipsoidea (50%)
2 2009 bp 56.69 5.72 92.73
sw_11_scaffold_20520
Species: Volvox carteri (50%)
2 1461 bp 52.16 4.65 60.16
sw_11_scaffold_29151
Species: Micromonas sp. RCC299 (50%)
2 1145 bp 54.50 5.94 103.23
sw_11_scaffold_15019
Species: Araucaria cunninghamii (50%)
2 1056 bp 55.68 4.64 85.51
sw_11_scaffold_12486
Species: Chlamydomonas reinhardtii (50%)
2 1208 bp 53.06 4.97 89.16
sw_11_scaffold_11799
Species: Tetraselmis sp. GSL018 (50%)
2 1257 bp 56.32 6.28 103.82
sw_11_scaffold_9707
Species: Micromonas sp. RCC299 (50%)
2 1454 bp 55.43 5.57 99.24
sw_11_scaffold_14566
Species: Populus trichocarpa (50%)
2 1080 bp 54.07 6.11 83.89
sw_11_scaffold_13418
Species: Solanum lycopersicum (50%)
2 1149 bp 50.83 4.70 65.01
sw_11_scaffold_15953
Species: Micromonas pusilla (50%)
2 1011 bp 55.09 4.35 73.59
sw_11_scaffold_15262
Species: Micromonas sp. RCC299 (50%)
2 1043 bp 51.68 3.55 102.40
sw_11_scaffold_21658
Species: Araucaria cunninghamii (50%)
2 1356 bp 57.82 6.27 87.39
sw_11_scaffold_5568
Species: Morus notabilis (50%)
2 2145 bp 53.24 5.55 100.56
sw_11_scaffold_9485
Species: Tetraselmis sp. GSL018 (50%)
2 1481 bp 55.50 6.01 68.47
sw_11_scaffold_7649
Species: Coccomyxa subellipsoidea (50%)
2 1724 bp 54.12 7.25 54.81
sw_11_scaffold_9722
Species: Ostreococcus 'lucimarinus' (50%)
2 1452 bp 53.65 3.79 43.18
sw_11_scaffold_19610
Species: Ostreococcus tauri (50%)
2 1370 bp 51.31 6.20 68.10
sw_11_scaffold_26520
Species: Bathycoccus prasinos (50%)
2 1258 bp 55.01 5.25 98.49
sw_11_scaffold_10203
Species: Selaginella moellendorffii (50%)
2 1398 bp 50.79 6.22 56.01
sw_11_scaffold_6961
Species: Tetraselmis sp. GSL018 (50%)
2 1840 bp 51.85 5.98 99.78
sw_11_scaffold_11126
Species: Ostreococcus tauri (50%)
2 1314 bp 55.10 5.40 97.49
sw_11_scaffold_13662
Species: Micromonas sp. RCC299 (50%)
2 1135 bp 50.48 4.93 102.29
sw_11_scaffold_9267
Species: Eucalyptus grandis (50%)
2 1509 bp 51.03 6.10 49.70
sw_11_scaffold_11362
Species: Selaginella moellendorffii (50%)
2 1294 bp 52.16 5.72 81.84
sw_11_scaffold_14128
Species: Micromonas sp. RCC299 (50%)
2 1107 bp 52.12 5.87 77.51
sw_11_scaffold_6969
Species: Micromonas sp. RCC299 (50%)
2 1839 bp 55.46 5.33 98.53
sw_11_scaffold_7892
Species: Ostreococcus 'lucimarinus' (50%)
2 1686 bp 52.43 6.05 90.04
sw_11_scaffold_8813
Species: Chlorella variabilis (50%)
2 1559 bp 54.71 5.07 51.38
sw_11_scaffold_14593
Species: Monoraphidium neglectum (50%)
2 1079 bp 55.05 6.67 67.01
sw_11_scaffold_25337
Species: Eucalyptus grandis (50%)
2 1216 bp 51.15 6.00 76.23
sw_11_scaffold_14136
Species: Erythranthe guttata (50%)
2 1106 bp 53.53 5.42 95.48
sw_11_scaffold_15519
Species: Capsella rubella (50%)
2 1031 bp 52.57 4.95 68.38
sw_11_scaffold_11141
Species: Tetraselmis sp. GSL018 (50%)
2 1313 bp 52.48 6.85 43.41
sw_11_scaffold_12294
Species: Lactuca sativa (50%)
2 1221 bp 51.60 5.73 68.80
sw_11_scaffold_12987
Species: Micromonas sp. RCC299 (50%)
2 1176 bp 54.59 5.78 77.04
sw_11_scaffold_13680
Species: Auxenochlorella protothecoides (50%)
2 1134 bp 53.53 6.08 95.77
sw_11_scaffold_11377
Species: Tetraselmis sp. GSL018 (50%)
2 1293 bp 57.08 6.42 79.12
sw_11_scaffold_9517
Species: Chlorella variabilis (50%)
2 2144 bp 54.66 5.32 83.12
sw_11_scaffold_15296
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1042 bp 56.53 5.18 71.11
sw_11_scaffold_3529
Species: Amborella trichopoda (50%)
2 2906 bp 53.34 4.82 90.02
sw_11_scaffold_33088
Species: Ostreococcus tauri (50%)
2 1714 bp 48.95 5.72 53.03
sw_11_scaffold_21828
Species: Chlorella variabilis (50%)
2 1284 bp 54.67 6.07 96.03
sw_11_scaffold_8835
Species: Ostreococcus 'lucimarinus' (50%)
2 1557 bp 49.71 4.56 32.37
sw_11_scaffold_10004
Species: Micromonas pusilla (50%)
2 1421 bp 57.07 5.42 72.84
sw_11_scaffold_15535
Species: Micromonas pusilla (50%)
2 1573 bp 51.49 5.02 101.46
sw_11_scaffold_10698
Species: Tetraselmis sp. GSL018 (50%)
2 1352 bp 56.07 5.33 94.08
sw_11_scaffold_13231
Species: Ostreococcus 'lucimarinus' (50%)
2 1161 bp 57.28 5.77 84.50
Displaying items 101-150 of 401 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.