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sw_12_scaffold_74

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_74_trna_1
unknown

Not on your lists

284..356
DNA (73bp)
transferRNA
sw_12_scaffold_74_trna_2
unknown

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530..611
DNA (82bp)
transferRNA
sw_12_scaffold_74_trna_3
unknown

Not on your lists

678..750
DNA (73bp)
transferRNA
sw_12_scaffold_74_trna_4
unknown

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787..858
DNA (72bp)
transferRNA
sw_12_scaffold_74_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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921..2111
DNA (1191bp) protein (397aa)
tufA; translation elongation factor Tu (EF-Tu)
tufA; translation elongation factor Tu (EF-Tu); K02358 elongation factor Tu id=24658956 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Orde
sw_12_scaffold_74_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


2167..2367
DNA (201bp) protein (67aa)
30S ribosomal protein S10 n=2 Tax=Salinibacter ruber RepID=RS10_SALRD
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
sw_12_scaffold_74_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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2351..2536
DNA (186bp) protein (62aa)
Preprotein translocase subunit SecE
Preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=24659726 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sali
sw_12_scaffold_74_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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2600..3157
DNA (558bp) protein (186aa)
nusG; transcription antitermination protein NusG
nusG; transcription termination/antitermination factor NusG; K02601 transcriptional antiterminator NusG id=24659725 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae
sw_12_scaffold_74_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


3275..3718
DNA (444bp) protein (148aa)
50S ribosomal protein L11 n=3 Tax=Salinibacter ruber RepID=RL11_SALRD
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000313|EMBL:CBH24896.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salini
sw_12_scaffold_74_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


3842..4555
DNA (714bp) protein (238aa)
50S ribosomal protein L1 n=2 Tax=Salinibacter ruber RepID=RL1_SALRD
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter
sw_12_scaffold_74_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


4605..5141
DNA (537bp) protein (179aa)
rplJ; 50S ribosomal protein L10
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=24659722 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Sali
sw_12_scaffold_74_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


5281..5664
DNA (384bp) protein (128aa)
rplL; 50S ribosomal protein L7/L12
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 id=24659721 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Saliniba
sw_12_scaffold_74_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6305..10168
DNA (3864bp) protein (1288aa)
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] id=24659720 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CB
rpoB; DNA-directed RNA polymerase subunit beta
sw_12_scaffold_74_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10283..14623
DNA (4341bp) protein (1447aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000313|EMBL:
rpoC; DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] id=24659719 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
rpoC; DNA-directed RNA polymerase subunit beta'
sw_12_scaffold_74_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

14972..16324
DNA (1353bp) protein (451aa)
gltP; sodium:dicarboxylate symporter
gltP; sodium:dicarboxylate symporter id=24659717 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Proton/glutamate symporter {ECO:0000313|EMBL:ABC45627.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter r
sw_12_scaffold_74_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16435..17841
DNA (1407bp) protein (469aa)
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:ABC46273.1}; EC=4.1.99.3 {ECO:0000313|EMBL:ABC46273.1};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodo
Deoxyribodipyrimidine photolyase n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S1Q9_SALRD
phrB; deoxyribodipyrimidine photolyase
sw_12_scaffold_74_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(17899..18381)
DNA (483bp) protein (161aa)
Uncharacterized protein n=2 Tax=Salinibacter ruber RepID=Q2S1R1_SALRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24886.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_74_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18595..19575
DNA (981bp) protein (327aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448, ECO:0000313|EMBL:CBH24880.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae
Aspartokinase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA25_SALRM
dapG; aspartate kinase
sw_12_scaffold_74_15
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(19592..21148)
DNA (1557bp) protein (519aa)
Transcriptional regulator, GntR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZR3_RUBXD
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABG03115.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;"
sw_12_scaffold_74_16
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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21340..24438
DNA (3099bp) protein (1033aa)
TonB-dependent receptor n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JJ86_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:ELR68860.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
SusC/RagA family TonB-linked outer membrane protein
sw_12_scaffold_74_17
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24498..25928
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JMX3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR68859.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
hypothetical protein
sw_12_scaffold_74_18
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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26257..27108
DNA (852bp) protein (284aa)
Beta-lactamase {ECO:0000313|EMBL:EON76014.1}; EC=3.5.2.6 {ECO:0000313|EMBL:EON76014.1};; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclo
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI0003690ED4
beta-lactamase
sw_12_scaffold_74_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

27113..28213
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA23_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24878.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_74_20
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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28349..29158
DNA (810bp) protein (270aa)
membrane dipeptidase (EC:3.4.13.19)
Membrane dipeptidase {ECO:0000313|EMBL:ACY47724.1}; EC=3.4.13.19 {ECO:0000313|EMBL:ACY47724.1};; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedi
Membrane dipeptidase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MGT9_RHOM4
sw_12_scaffold_74_21
Chlamydomonas reinhardtii, Chlamydomonas, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

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comp(29741..30697)
DNA (957bp) protein (319aa)
Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8J9A6_CHLRE
Predicted protein {ECO:0000313|EMBL:EDO99417.1}; TaxID=3055 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.;" source="Chlamydomonas
hypothetical protein
sw_12_scaffold_74_22
Metarhizium robertsii, Metarhizium, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

comp(30704..31447)
DNA (744bp) protein (248aa)
CG9915, isoform B n=3 Tax=Drosophila melanogaster RepID=A8JV07_DROME
Uncharacterized protein {ECO:0000313|EMBL:EXV03893.1}; TaxID=568076 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Clavicipitaceae; Me
CG9915 gene product from transcript CG9915-RB
Displaying 26 items

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