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sw_12_scaffold_239

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_239_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2..316
DNA (315bp) protein (105aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446, ECO:0000313|EMBL:CBH25110.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes
Isocitrate dehydrogenase [NADP] n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HAQ5_SALRM
icd; isocitrate dehydrogenase
sw_12_scaffold_239_2
unknown

Not on your lists

498..899
DNA (402bp) protein (134aa)

This feature has no annotations

sw_12_scaffold_239_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1168..1815
DNA (648bp) protein (216aa)
NUDIX family hydrolase
NUDIX family hydrolase id=24657902 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Hydrolase, NUDIX family protein {ECO:0000313|EMBL:ABC43664.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibac
sw_12_scaffold_239_4
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(2113..2718)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Halomonas lutea RepID=UPI00037E9938
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI15273.1}; Flags: Precursor;; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera rad
sw_12_scaffold_239_5
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3487..4065
DNA (579bp) protein (193aa)
Raf kinase inhibitor-like protein, YbhB/YbcL family n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I5F4_METCZ
Raf kinase inhibitor-like protein, YbhB/YbcL family
Raf kinase inhibitor-like protein, YbhB/YbcL family {ECO:0000313|EMBL:AFC98848.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" so
sw_12_scaffold_239_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

4135..6207
DNA (2073bp) protein (691aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {EC
DNA ligase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7J3_SALRM
ligA; NAD-dependent DNA ligase
sw_12_scaffold_239_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6597..6881
DNA (285bp) protein (95aa)
hypothetical protein
hypothetical protein id=24657566 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC44753.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_239_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6915..7427
DNA (513bp) protein (171aa)
GAF domain-containing protein
GAF domain-containing protein; K07170 GAF domain-containing protein id=24657565 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
GAF domain protein {ECO:0000313|EMBL:ABC45163.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (st
sw_12_scaffold_239_9
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

7535..7825
DNA (291bp) protein (97aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJ26_CHIPD
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Caldithrix_48_16_curated
ECF subfamily RNA polymerase sigma-24 subunit
sw_12_scaffold_239_10
unknown

Not on your lists

7822..8010
DNA (189bp) protein (63aa)

This feature has no annotations

sw_12_scaffold_239_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8030..9169
DNA (1140bp) protein (380aa)
Extracellular solute-binding protein, family 7 n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7H9_SALRM
extracellular solute-binding protein
Extracellular solute-binding protein, family 7 {ECO:0000313|EMBL:CBH23984.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" so
sw_12_scaffold_239_12
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9395..9664
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI00031D5567
protein of unknown function DUF433 Tax=RBG_16_Betaproteobacteria_64_18_curated
protein of unknown function DUF433
sw_12_scaffold_239_13
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

9661..9993
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B3D500
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACC84462.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
sw_12_scaffold_239_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10124..11080
DNA (957bp) protein (319aa)
Predicted transcriptional regulator n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7H5_SALRM
transcriptional regulator
Predicted transcriptional regulator {ECO:0000313|EMBL:CBH23980.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salin
sw_12_scaffold_239_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11097..12089
DNA (993bp) protein (331aa)
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7H4_SALRM
alpha/beta hydrolase
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) {ECO:0000313|EMBL:CBH23979.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodot
sw_12_scaffold_239_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11968..12417)
DNA (450bp) protein (150aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
signal transduction histidine kinase, membrane
sensory transduction histidine kinase id=24657749 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
sw_12_scaffold_239_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

13013..15052
DNA (2040bp) protein (680aa)
Vitamin B12 transporter btuB [Precursor] n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7H1_SALRM
btuB; vitamin B12 transporter btuB
Vitamin B12 transporter btuB [Precursor] {ECO:0000313|EMBL:CBH23976.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="
sw_12_scaffold_239_18
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

15071..16222
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MGI3_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY49546.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source
sw_12_scaffold_239_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16284..16499
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7G7_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23972.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_239_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16540..17289
DNA (750bp) protein (250aa)
Uncharacterized proteins, LmbE homolog n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7G6_SALRM
LmbE-like protein
Uncharacterized proteins, LmbE homolog {ECO:0000313|EMBL:CBH23971.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sa
sw_12_scaffold_239_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17380..18474
DNA (1095bp) protein (365aa)
signal transduction histidine kinase, membrane; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] id=24657741 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
signal transduction histidine kinase, membrane
sw_12_scaffold_239_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18701..19117
DNA (417bp) protein (139aa)
Chaperonin, 10 kDa n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S485_SALRD
groS; chaperonin, 10 kDa
Chaperonin, 10 kDa {ECO:0000313|EMBL:ABC43606.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (st
sw_12_scaffold_239_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(19139..20971)
DNA (1833bp) protein (611aa)
hypothetical protein
hypothetical protein id=24657737 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Putative membrane protein {ECO:0000313|EMBL:ABC45600.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ru
sw_12_scaffold_239_24
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(21065..21823)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7G0_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23965.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_239_25
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(21852..22718)
DNA (867bp) protein (289aa)
hypothetical protein id=24657735 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23964.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_239_26
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(22832..23629)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7F8_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23963.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_239_27
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(23742..25238)
DNA (1497bp) protein (499aa)
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rul
Glutamate--tRNA ligase n=2 Tax=Salinibacter ruber RepID=SYE_SALRD
gltX; glutamyl-tRNA synthetase
sw_12_scaffold_239_28
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

25596..27599
DNA (2004bp) protein (668aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherm
PPIC-type PPIASE domain protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA75_SALRM
PPIC-type PPIASE domain-containing protein
Displaying 28 items

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