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sw_12_scaffold_1710

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_1710_1
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(1..303)
DNA (303bp) protein (101aa)
Oligopeptidase F n=1 Tax=Natronococcus occultus SP4 RepID=L0JZQ0_9EURY
oligopeptidase F
Oligoendopeptidase F {ECO:0000313|EMBL:ELZ22956.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 13563.
sw_12_scaffold_1710_2
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(362..1366)
DNA (1005bp) protein (335aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridy
tRNA pseudouridine synthase A n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NLG1_HALBP
pseudouridylate synthase
sw_12_scaffold_1710_3
unknown

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comp(1366..1686)
DNA (321bp) protein (107aa)

This feature has no annotations

sw_12_scaffold_1710_4
Haloterrigena thermotolerans, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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1862..2749
DNA (888bp) protein (296aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Haloterrigena thermotolerans DSM 11522 RepID=M0C0M7_9EURY
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ELZ16223.1}; TaxID=1227489 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;"
signal transduction histidine kinase
sw_12_scaffold_1710_5
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2658..3968)
DNA (1311bp) protein (437aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=519442 species="Archaea; Eur
Histidine--tRNA ligase n=1 Tax=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) RepID=C7NTG4_HALUD
sw_12_scaffold_1710_6
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4182..4472
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PR55_9EURY
hypothetical protein (DUF433)
Uncharacterized protein {ECO:0000313|EMBL:ERJ04701.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea SARL4
sw_12_scaffold_1710_7
Natronolimnobius innermongolicus, Natronolimnobius, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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4472..4816
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Natronolimnobius innermongolicus JCM 12255 RepID=L9WQL0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY51682.1}; TaxID=1227499 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronolimnobius.;" source="Natronolimnobius innermongo
hypothetical protein
sw_12_scaffold_1710_8
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(4906..5841)
DNA (936bp) protein (312aa)
Transferase hexapeptide repeat containing protein n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LXS4_9EURY
Transferase hexapeptide repeat containing protein {ECO:0000313|EMBL:EMA37144.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobif
acetyltransferase
sw_12_scaffold_1710_9
Halonotius sp. J07HN4, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6133..6591)
DNA (459bp) protein (153aa)
aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2)
aspartate carbamoyltransferase regulatory subunit; K00610 aspartate carbamoyltransferase regulatory subunit id=24618600 bin=Halonotius_J07HN4 species=Halonotius sp. J07HN4 genus=Halonotius taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halonotius_J07HN4
Aspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002}; TaxID=1070774 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halonotius.;" source="Hal
sw_12_scaffold_1710_10
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(6594..6728)
DNA (135bp) protein (45aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:ELY53352.1};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_0000
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9WV99_9EURY
sw_12_scaffold_1710_11
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6686..7480)
DNA (795bp) protein (265aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=797209 species="Arc
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QYW8_9EURY
sw_12_scaffold_1710_12
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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7770..8360
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IDE6_9EURY
Transcriptional regulator {ECO:0000313|EMBL:AHG03882.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1.;
recombinase A
sw_12_scaffold_1710_13
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8376..9866)
DNA (1491bp) protein (497aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Halogranum salarium B-1 RepID=J3EZN0_9EURY
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
peptidyl-prolyl cis-trans isomerase
sw_12_scaffold_1710_14
Haloferax mucosum, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10011..10388
DNA (378bp) protein (126aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00136}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00136};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00136, ECO:0000313|EMBL:ELZ98769.1};; M
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Haloferax mucosum ATCC BAA-1512 RepID=M0ITF5_9EURY
sw_12_scaffold_1710_15
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10473..11219
DNA (747bp) protein (249aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00136}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00136};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00136, ECO:0000313|EMBL:EMA38759.1};; M
S-adenosylmethionine synthase n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0M2C4_9EURY
archaeal S-adenosylmethionine synthetase
sw_12_scaffold_1710_16
unknown

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comp(11265..11711)
DNA (447bp) protein (149aa)

This feature has no annotations

sw_12_scaffold_1710_17
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11887..12354
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W1H0_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN02456.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harcht-Bsk1.
Displaying 17 items

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