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sw_12_scaffold_3423

Search features with annotation key words

Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_3423_1
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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1..270
DNA (270bp) protein (90aa)
PAS domain S-box n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NUL8_HALBP
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:ADQ68738.1}; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum borinquense (strai
sw_12_scaffold_3423_2
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

329..1252
DNA (924bp) protein (308aa)
Putative ribose 1,5-bisphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00304}; EC=5.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00304};; Ribulose 1,5-bisphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00304}; TaxI
ribonucleoside-triphosphate reductase n=1 Tax=Halomicrobium katesii RepID=UPI00037D92AE
ribulose-1,5-biphosphate synthetase
sw_12_scaffold_3423_3
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1507..2025
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0JCQ8_HALVA
Uncharacterized protein {ECO:0000313|EMBL:EMA06766.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula vallismortis ATCC
hypothetical protein
sw_12_scaffold_3423_4
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2022..3110)
DNA (1089bp) protein (363aa)
Putative uncharacterized protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IIJ3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AHG05167.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1.;"
hypothetical protein
sw_12_scaffold_3423_5
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3178..3885)
DNA (708bp) protein (236aa)
Type 11 methyltransferase n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LM94_HALJP
Type 11 methyltransferase {ECO:0000313|EMBL:EMA33145.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 6
smtA2; type 11 methyltransferase
sw_12_scaffold_3423_6
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3896..4792)
DNA (897bp) protein (299aa)
DNA binding protein n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0KHF4_9EURY
DNA binding protein {ECO:0000313|EMBL:EMA20596.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula californiae ATCC 3379
DNA binding protein rbh
sw_12_scaffold_3423_7
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(4820..5158)
DNA (339bp) protein (113aa)
Probable deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=797114 s
dcd; dCTP deaminase/deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Probable deoxycytidine triphosphate deaminase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CCC6_9EURY
sw_12_scaffold_3423_8
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5206..5370)
DNA (165bp) protein (55aa)
Probable deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=1592728
Deoxycytidine triphosphate deaminase n=3 Tax=Haloarcula RepID=V5TMV2_HALHI
deoxycytidine triphosphate deaminase
sw_12_scaffold_3423_9
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5573..5911
DNA (339bp) protein (113aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00628}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00628};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00628};; TaxID=662477 species="Archaea; Euryarchaeota; H
Peptidyl-tRNA hydrolase n=4 Tax=Haloarcula RepID=PTH_HALMA
sw_12_scaffold_3423_10
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5984..6250
DNA (267bp) protein (89aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {
Proteasome subunit alpha n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KG92_HALAR
proteasome subunit alpha
sw_12_scaffold_3423_11
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6325..6645
DNA (321bp) protein (107aa)
psmA3; proteasome subunit alpha (EC:3.4.25.1)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {
Proteasome subunit alpha n=3 Tax=Haloarcula RepID=G0HX06_HALHT
sw_12_scaffold_3423_12
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6645..7337
DNA (693bp) protein (231aa)
Proteasome subunit beta {ECO:0000256|HAMAP-Rule:MF_02113}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_02113};; 20S proteasome beta subunit {ECO:0000256|HAMAP-Rule:MF_02113}; Proteasome core protein PsmB {
psmB; proteasome subunit beta (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0K6L7_9EURY
sw_12_scaffold_3423_13
unknown

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comp(7282..7506)
DNA (225bp) protein (75aa)

This feature has no annotations

sw_12_scaffold_3423_14
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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7662..9008
DNA (1347bp) protein (449aa)
Transporter possibly hexose n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5V1E4_HALMA
transporter
Transporter possibly hexose {ECO:0000313|EMBL:AAV46658.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (
sw_12_scaffold_3423_15
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9057..9800
DNA (744bp) protein (248aa)
Probable tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseud
truD; tRNA pseudouridine synthase D (EC:5.4.99.12)
Probable tRNA pseudouridine synthase D n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0K6M9_9EURY
sw_12_scaffold_3423_16
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9782..10366
DNA (585bp) protein (195aa)
Probable tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseud
truD; tRNA pseudouridine synthase D (EC:5.4.99.12)
Probable tRNA pseudouridine synthase D n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KCB4_HALAR
Displaying 16 items

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