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sw_4_scaffold_1275

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_1275_1
R_OD1_Uhrbacteria_47_25, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2..706)
DNA (705bp) protein (235aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=RIFCSPLOWO2_01_FULL_OD1_Uhrbacteria_47_25_curate
korA; 2-oxoglutarate synthase subunit alpha (EC:1.2.7.3)
2-oxoglutarate synthase, alpha subunit n=1 Tax=Bacillus methanolicus MGA3 RepID=I3DZJ0_BACMT
sw_4_scaffold_1275_trna_1
unknown

Not on your lists

comp(775..861)
DNA (87bp)
transferRNA
sw_4_scaffold_1275_2
unknown

Not on your lists

940..1461
DNA (522bp) protein (174aa)

This feature has no annotations

sw_4_scaffold_1275_3
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(1836..2777)
DNA (942bp) protein (314aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=518766 species="Bacteria; Bacteroidete
Riboflavin biosynthesis protein RibF n=2 Tax=Rhodothermus marinus RepID=D0MI94_RHOM4
riboflavin biosynthesis protein RibF
sw_4_scaffold_1275_4
R_SM2F11_46_11, SM2F11, Bacteria

Not on your lists

comp(2782..3912)
DNA (1131bp) protein (377aa)
Type IV pilus assembly protein tapC n=1 Tax=uncultured bacterium RepID=K1ZRD4_9BACT
type II secretory pathway, component PulF Tax=RIFCSPHIGHO2_02_FULL_SM2F11_46_11_curated
hypothetical protein
sw_4_scaffold_1275_5
R_OP11_Daviesbacteria_36_13, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(3916..4563)
DNA (648bp) protein (216aa)
type IV pilus assembly protein PilB; K02652 type IV pilus assembly protein PilB Tax=RIFCSPHIGHO2_02_FULL_OP11_Daviesbacteria_36_13_curated
general secretory pathway protein E; K02652 type IV pilus assembly protein PilB id=14424061 bin=bin11_novelCP species=ACD24 genus=ACD24 taxon_order=ACD24 taxon_class=ACD24 phylum=WWE3 tax=bin11_novelCP organism_group=Unknown_CP
gspE; general secretion pathway protein E
sw_4_scaffold_1275_6
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

Not on your lists

comp(4632..5633)
DNA (1002bp) protein (334aa)
UniRef90_A5KSJ7 Type II secretion system protein E n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSJ7_9BACT id=3021 bin=ACD11 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
pilB; type 4 fimbrial assembly protein PilB; K02652 type IV pilus assembly protein PilB Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
type II secretion system protein E
sw_4_scaffold_1275_7
R_SM2F11_49_9, SM2F11, Bacteria

Not on your lists

comp(5668..6036)
DNA (369bp) protein (123aa)
OmpR5; response regulator id=5102537 bin=GWF1_WS6_37_7 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF1_WS6_37_7 organism_group=WS6 (Doikabacteria)
rpaB; two-component response regulator Tax=RIFCSPHIGHO2_01_FULL_SM2F11_49_9_curated
Two component transcriptional regulator, winged helix
sw_4_scaffold_1275_8
R_OD1_48_10, Parcubacteria, Bacteria

Not on your lists

comp(6059..7714)
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z2T0_9BACT
PAS domain-containing protein Tax=RIFCSPLOWO2_01_FULL_OD1_48_10_curated
hypothetical protein
sw_4_scaffold_1275_9
GWD2_OD1_38_42, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7724..7933)
DNA (210bp) protein (70aa)
UDP-N-acetylmuramyl-tripeptide synthetase id=1743924 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000313|EMBL:KKQ72840.1}; TaxID=1618637 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWD2_38_42.;"
sw_4_scaffold_1275_10
R_RIF_OD1_07_47_27, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(7933..9072)
DNA (1140bp) protein (380aa)
murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_47_27_curated
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase id=1947760 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
sw_4_scaffold_1275_11
R_RIF_OD1_07_45_25, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(9495..10157)
DNA (663bp) protein (221aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_45_25_curated
Ribulose-phosphate 3-epimerase n=4 Tax=Dehalococcoides mccartyi RepID=D3SID6_DEHSG
ribulose-phosphate 3-epimerase
sw_4_scaffold_1275_12
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10160..11026)
DNA (867bp) protein (289aa)
transaldolase family protein; K00616 transaldolase [EC:2.2.1.2] Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
dma:DMR_44980 transaldolase family protein; K00616 transaldolase [EC:2.2.1.2] id=71440 bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
transaldolase family protein
sw_4_scaffold_1275_13
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(11067..13424)
DNA (2358bp) protein (786aa)
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=CG_CPR12_01
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKD3_THEYD
sw_4_scaffold_1275_14
unknown

Not on your lists

comp(13429..13752)
DNA (324bp) protein (108aa)

This feature has no annotations

sw_4_scaffold_1275_15
RIFOXYC1_FULL_OD1_Adlerbacteria_48_26_curated, Adlerbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14410..14991)
DNA (582bp) protein (194aa)
DEAD/DEAH box helicase domain-containing protein; K06877 DEAD/DEAH box helicase domain-containing protein Tax=RIFOXYC1_FULL_OD1_Adlerbacteria_48_26_curated
DEAD/DEAH box helicase domain-containing protein; K06877 DEAD/DEAH box helicase domain-containing protein id=5803653 bin=OD1_GWC2_34_28 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DEAD/DEAH box helicase
sw_4_scaffold_1275_16
R_OD1_Magasanikbacteria_33_17, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14994..15596)
DNA (603bp) protein (201aa)
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_33_17_curated
ribE; riboflavin synthase (EC:2.5.1.9)
Riboflavin synthase subunit alpha n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=M0J3P2_HALMT
sw_4_scaffold_1275_17
RIFOXYC2_FULL_OD1_Magasanikbacteria_42_28_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

16131..16955
DNA (825bp) protein (275aa)
tagatose 1,6-diphosphate aldolase-like protein; K01635 tagatose 1,6-diphosphate aldolase [EC:4.1.2.40] Tax=RIFOXYC2_FULL_OD1_Magasanikbacteria_42_28_curated
tagatose 1,6-diphosphate aldolase (EC:4.1.2.40)
Tagatose 1,6-diphosphate aldolase, putative id=3309936 bin=GWA1_ZB2_49_26 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
sw_4_scaffold_1275_18

Not on your lists

16993..18135
DNA (1143bp) protein (381aa)
Mechanosensitive ion channel protein MscS n=1 Tax=Pontibacter sp. BAB1700 RepID=J1FI76_9BACT
Marine sediment metagenome DNA, contig: S01H1_L05969 {ECO:0000313|EMBL:GAF69391.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
mechanosensitive ion channel protein MscS
sw_4_scaffold_1275_19
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

18148..19185
DNA (1038bp) protein (346aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
tex:Teth514_2278 glycosyl transferase, group 1 id=138540 bin=ACD9 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=ACD9 organism_group=OD1-i organism_desc=OD1-i
group 1 glycosyl transferase
sw_4_scaffold_1275_20

Not on your lists

19194..19796
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EYZ6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKT24619.1}; TaxID=1618828 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_43_9b.;"
sw_4_scaffold_1275_21
R_OD1_Falkowbacteria_46_11b, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

19797..20717
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FJ66_9BACT
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_OD1_Falkowbacteria_46_11b_curated
group 1 glycosyl transferase
Displaying 22 items

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