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sw_4_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_40_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3..215
DNA (213bp) protein (71aa)
hypothetical protein
hypothetical protein id=24657763 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC45101.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_40_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

362..1075
DNA (714bp) protein (238aa)
TonB family protein
TonB family protein; K03832 periplasmic protein TonB id=24657895 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
TonB family C-terminal domain protein {ECO:0000313|EMBL:ABC44721.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sal
sw_4_scaffold_40_3
R_RIF_OD1_11_43_32b, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1358..3316
DNA (1959bp) protein (653aa)
Subtilisin n=1 Tax=Rhodopirellula europaea 6C RepID=M2AET7_9PLAN
peptidase S8/S53 subtilisin kexin sedolisin Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_43_32b_curated
peptidase S8/S53 subtilisin kexin sedolisin
sw_4_scaffold_40_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3621..5693
DNA (2073bp) protein (691aa)
Pyruvate dehydrogenase beta subunit {ECO:0000313|EMBL:CBH25103.1}; EC=1.2.4.4 {ECO:0000313|EMBL:CBH25103.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rho
Pyruvate dehydrogenase beta subunit n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HAP8_SALRM
bkdA2; Pyruvate dehydrogenase beta subunit
sw_4_scaffold_40_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

5816..6166
DNA (351bp) protein (117aa)
hypothetical protein
hypothetical protein id=24657893 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH25102.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_40_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6197..8566)
DNA (2370bp) protein (790aa)
glutaminyl-tRNA synthetase; K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18] id=24659756 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:
glutaminyl-tRNA synthetase
sw_4_scaffold_40_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(8795..9298)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA72_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24927.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_40_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(9445..10482)
DNA (1038bp) protein (346aa)
arginine/ornithine transport system ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-] id=24659754 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
LAO/AO transport system ATPase {ECO:0000313|EMBL:ABC45690.1}; EC=2.7.-.- {ECO:0000313|EMBL:ABC45690.1};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothe
arginine/ornithine transport system ATPase
sw_4_scaffold_40_9
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10504..11247)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VMB1_9CYAN
protein of unknown function DUF820
Uncharacterized protein {ECO:0000313|EMBL:AFZ08674.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 711
sw_4_scaffold_40_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11276..13435)
DNA (2160bp) protein (720aa)
Methylmalonyl-CoA mutase large subunit {ECO:0000313|EMBL:CBH24925.1}; EC=5.4.99.2 {ECO:0000313|EMBL:CBH24925.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis;
Methylmalonyl-CoA mutase large subunit n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA70_SALRM
mutB; methylmalonyl-CoA mutase large subunit
sw_4_scaffold_40_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(13500..15569)
DNA (2070bp) protein (690aa)
mutA; methylmalonyl-CoA mutase small subunit; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2] id=24659752 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Methylmalonyl-CoA mutase small subunit {ECO:0000313|EMBL:CBH24924.1}; EC=5.4.99.2 {ECO:0000313|EMBL:CBH24924.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis;
mutA; methylmalonyl-CoA mutase small subunit
sw_4_scaffold_40_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(15734..16294)
DNA (561bp) protein (187aa)
methyltransferase
hypothetical protein id=24656806 bin=Salinibacter_J07SB67 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_J07SB67
SpoU rRNA methylase family protein {ECO:0000313|EMBL:ABC45198.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salini
sw_4_scaffold_40_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16671..17285
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S1M5_SALRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC45506.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_40_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17454..18038
DNA (585bp) protein (195aa)
Cytidylate kinase {ECO:0000255|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000255|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000255|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000255|HAMAP-Rule:
Cytidylate kinase n=2 Tax=Salinibacter ruber RepID=KCY_SALRD
cmk; cytidylate kinase
sw_4_scaffold_40_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


18409..20955
DNA (2547bp) protein (849aa)
30S ribosomal protein S1 n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA65_SALRM
rpsA; 30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000313|EMBL:CBH24920.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rub
sw_4_scaffold_40_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

21028..22533
DNA (1506bp) protein (502aa)
NAD-dependent malic enzyme {ECO:0000313|EMBL:ABC44896.1}; EC=1.1.1.38 {ECO:0000313|EMBL:ABC44896.1};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherma
NAD-dependent malic enzyme n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S1M8_SALRD
NAD-dependent malic enzyme
sw_4_scaffold_40_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

22582..23355
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA63_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24918.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_40_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

23365..23715
DNA (351bp) protein (117aa)
hypothetical protein
hypothetical protein id=24659745 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC43979.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_40_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

23887..24189
DNA (303bp) protein (101aa)
hypothetical protein
hypothetical protein id=24659744 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24916.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_40_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(24304..25797)
DNA (1494bp) protein (498aa)
Aldehyde dehydrogenase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA60_SALRM
aldHT; Aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:CBH24915.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber
sw_4_scaffold_40_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

25974..27179
DNA (1206bp) protein (402aa)
Aspartate aminotransferase {ECO:0000313|EMBL:CBH24914.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CBH24914.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermac
Aspartate aminotransferase n=2 Tax=Salinibacter ruber RepID=Q2S1N3_SALRD
aspC; aspartate aminotransferase
sw_4_scaffold_40_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

27359..28411
DNA (1053bp) protein (351aa)
prfB; peptide chain release factor 2
prfB; peptide chain release factor 2; K02836 peptide chain release factor 2 id=24659741 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Saliniba
sw_4_scaffold_40_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

28742..29209
DNA (468bp) protein (156aa)
hypothetical protein
hypothetical protein; K09748 ribosome maturation factor RimP id=24659740 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae
sw_4_scaffold_40_24
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

29271..31004
DNA (1734bp) protein (578aa)
nusA; transcription elongation factor NusA
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A id=24659739 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salini
sw_4_scaffold_40_25
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

31074..34013
DNA (2940bp) protein (980aa)
Translation initiation factor IF-2 n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA55_SALRM
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermac
sw_4_scaffold_40_26
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

34087..34485
DNA (399bp) protein (133aa)
rbfA; ribosome-binding factor A
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A id=24659737 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000313|EMBL:CBH24909.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salini
sw_4_scaffold_40_27
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

34553..35281
DNA (729bp) protein (243aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B n=1 Tax=Salisaeta longa RepID=UPI0003B743E4
tRNA pseudouridine synthase B
sw_4_scaffold_40_28
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

35303..36238
DNA (936bp) protein (312aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=309807 species="Bacteria; Bacteroidete
Riboflavin biosynthesis protein RibF n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S1N9_SALRD
ribF; riboflavin biosynthesis protein RibF
sw_4_scaffold_40_29
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


36364..36630
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=2 Tax=Salinibacter ruber RepID=RS15_SALRD
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
sw_4_scaffold_40_30
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

36772..38907
DNA (2136bp) protein (712aa)
pnp; polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] id=24659734 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase
pnp; polynucleotide phosphorylase/polyadenylase
Displaying items 1-30 of 32 in total

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