ggKbase home page

sw_4_scaffold_634

Search features with annotation key words

Displaying 28 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_634_1
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3..455)
DNA (453bp) protein (151aa)
aspB2; aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KGF4_9EURY
Aspartate aminotransferase {ECO:0000313|EMBL:AJF26298.1}; TaxID=1592728 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sp. CBA1115.;
sw_4_scaffold_634_2
Halorubrum sp. J07HR59, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

693..1751
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Halorubrum sp. J07HR59 RepID=U1NIW8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ERH03470.1}; TaxID=1238428 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum sp. J07HR59.;"
ssuA; putative sulfonate ABC transporter periplasmic substrate-binding protein
sw_4_scaffold_634_3
Halorubrum sp. J07HR59, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1753..2541
DNA (789bp) protein (263aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=2 Tax=Archaea RepID=U1P010_9EURY
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:ERH03471.1}; TaxID=1238428 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; H
ssuC; ABC-type transport system permease protein (probable substrate nitrate/sulfonate/bicarbonate)
sw_4_scaffold_634_4

Not on your lists

2532..3299
DNA (768bp) protein (256aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=2 Tax=Archaea RepID=U1QDU7_9EURY
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:ESS12404.1}; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
ssuB; putative sulfonate ABC transporter ATP-binding protein
sw_4_scaffold_634_5
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3346..3588)
DNA (243bp) protein (81aa)
Uncharacterized protein {ECO:0000313|EMBL:EMA52172.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
sw_4_scaffold_634_6
Haloferax denitrificans, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3664..4587)
DNA (924bp) protein (308aa)
Glyoxalase n=1 Tax=Haloferax denitrificans ATCC 35960 RepID=M0JAT0_9EURY
Glyoxalase {ECO:0000313|EMBL:EMA06076.1}; TaxID=662478 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax denitrificans ATCC 35960.;"
glyoxalase
sw_4_scaffold_634_7
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4659..5189)
DNA (531bp) protein (177aa)
Holliday junction resolvase Hjc {ECO:0000256|HAMAP-Rule:MF_01490}; Short=Hjc {ECO:0000256|HAMAP-Rule:MF_01490};; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_01490};; TaxID=1132509 species="Archaea; Euryarc
Resolvase, Holliday junction-type n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M1A0_9EURY
Resolvase, Holliday junction-type
sw_4_scaffold_634_8
Natronobacterium gregoryi, Natronobacterium, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5302..6414)
DNA (1113bp) protein (371aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrola
Adenosylhomocysteinase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MHU5_9EURY
adenosylhomocysteinase
sw_4_scaffold_634_9
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6649..7038
DNA (390bp) protein (130aa)
MaoC domain protein dehydratase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J662_HALJB
MaoC domain-containing protein dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ADJ15780.1}; MaoC domain-containing protein dehydratase {ECO:0000313|EMBL:ELY37196.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Hal
sw_4_scaffold_634_10
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7084..8457)
DNA (1374bp) protein (458aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000256|HAMAP-Rule:MF_01281};; EC
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QN27_9EURY
amidohydrolase
sw_4_scaffold_634_11
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9319..10026
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MAE4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA42762.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_4_scaffold_634_12
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10149..10346
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MSS3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA48403.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
sw_4_scaffold_634_13
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10535..11380
DNA (846bp) protein (282aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-R
ATP phosphoribosyltransferase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MX64_9EURY
ATP phosphoribosyltransferase
sw_4_scaffold_634_14
unknown

Not on your lists

11463..11588
DNA (126bp) protein (42aa)

This feature has no annotations

sw_4_scaffold_634_15
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11680..12051)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N7S8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA53608.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_4_scaffold_634_16
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12086..12562)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0D5D1_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ30033.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
endoribonuclease L-PSP
sw_4_scaffold_634_17
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12762..13337)
DNA (576bp) protein (192aa)
TATA-box-binding protein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J609_HALJB
TATA-box binding family protein
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
sw_4_scaffold_634_18
Haloterrigena salina, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13411..14562
DNA (1152bp) protein (384aa)
RNA methylase n=1 Tax=Haloterrigena salina JCM 13891 RepID=M0CJV0_9EURY
RNA methylase {ECO:0000313|EMBL:ELZ22918.1}; TaxID=1227488 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena salina JCM 13891.;"
RNA methyltransferase
sw_4_scaffold_634_19
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14592..15002)
DNA (411bp) protein (137aa)
Ferredoxin n=1 Tax=Halorubrum lipolyticum DSM 21995 RepID=M0P2B2_9EURY
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KDS90397.1}; TaxID=2248 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum saccharovorum.;"
2Fe-2S iron-sulfur cluster binding domain-containing protein
sw_4_scaffold_634_20
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15748..16725)
DNA (978bp) protein (326aa)
Transcription initiation factor IIB n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N7H6_9EURY
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Hal
Transcription factor TFIIB cyclin-related protein
sw_4_scaffold_634_21
Haloferax mediterranei, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16984..17703
DNA (720bp) protein (240aa)
Transcription regulator n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=I3R9S1_HALMT
transcriptional regulator
Transcription regulator {ECO:0000313|EMBL:AFK20981.1}; Transcriptional regulator {ECO:0000313|EMBL:AHZ24155.1}; TaxID=523841 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacacea
sw_4_scaffold_634_22
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17787..18299
DNA (513bp) protein (171aa)
Bacterio-opsin activator HTH domain protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P465_HALMD
Bacterio-opsin activator HTH domain-containing protein
Bacterio-opsin activator HTH domain protein {ECO:0000313|EMBL:ACV47887.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halom
sw_4_scaffold_634_23
Haloterrigena salina, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18449..19147
DNA (699bp) protein (233aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Haloterrigena salina JCM 13891 RepID=M0C1M9_9EURY
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ELZ17181.1}; TaxID=1227488 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena
short-chain dehydrogenase/reductase SDR
sw_4_scaffold_634_24
Haloferax sp. Arc-Hr, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19385..20044)
DNA (660bp) protein (220aa)
Response regulator n=6 Tax=Haloferax RepID=L5NYI0_9EURY
Sensor histidine kinase TmoS {ECO:0000313|EMBL:CQR50244.1}; TaxID=1476858 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. Arc-Hr.;"
response regulator
sw_4_scaffold_634_25
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20234..22162
DNA (1929bp) protein (643aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
multi-sensor signal transduction histidine kinase id=24632646 bin=Haloquadratum_walsbyi_J07HQW2 species=Haloquadratum walsbyi genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_walsbyi_J07HQW2
PAS sensor histidine kinase {ECO:0000313|EMBL:ERG94419.1}; TaxID=1238425 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi J0
sw_4_scaffold_634_26
Halorubrum hochstenium, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22319..23440)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Halorubrum hochstenium ATCC 700873 RepID=M0F762_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ55042.1}; TaxID=1227481 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum hochstenium ATCC 700
hypothetical protein
sw_4_scaffold_634_27
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23443..23937)
DNA (495bp) protein (165aa)
DNA primase small subunit PriS {ECO:0000256|HAMAP-Rule:MF_00700, ECO:0000256|SAAS:SAAS00011001}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00700, ECO:0000256|SAAS:SAAS00044138};; TaxID=1227453 species="Ar
DNA primase small subunit PriS n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0L839_HALJP
DNA primase
sw_4_scaffold_634_28
unknown

Not on your lists

24098..24406
DNA (309bp) protein (103aa)

This feature has no annotations

Displaying 28 items

View Taxonomy