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SW_5_Halobacteriales_71_18

In projects: SW_5  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_5_UNK

Properties

Avg. coverage: 17.76 Longest contig: 39.43 Kbp Bin length: 1.46 Mbp GC content: 71.41 %
Contigs count: 136 Features count: 1513 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 28 / 55 MC: 3 BSCG 21 / 51 MC: 1 ASCG 22 / 38 MC: 1
Displaying items 1-50 of 136 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_5_scaffold_4109
Order: Halobacteriales (100%)
3 3509 bp 71.39 16.41 97.46
sw_5_scaffold_7078
Order: Halobacteriales (60%)
5 4246 bp 72.54 18.25 97.08
sw_5_scaffold_4886
Order: Halobacteriales (83.33%)
6 4134 bp 68.72 16.59 96.52
sw_5_scaffold_3569
Order: Halobacteriales (50%)
4 3814 bp 70.06 17.12 96.28
sw_5_scaffold_13881
Order: Halobacteriales (62.5%)
8 3934 bp 68.96 16.65 96.16
sw_5_scaffold_2414
Order: Halobacteriales (70.59%)
17 13611 bp 73.53 18.60 94.93
sw_5_scaffold_3575
Order: Halobacteriales (90%)
10 6542 bp 72.21 18.28 94.93
sw_5_scaffold_931
Order: Halobacteriales (62.5%)
16 8119 bp 69.87 19.63 94.73
sw_5_scaffold_2571
Class: Halobacteria (77.78%)
9 10544 bp 68.73 15.49 94.66
sw_5_scaffold_5156
Species: Halococcus salifodinae (50%)
4 3051 bp 71.42 18.42 93.90
sw_5_scaffold_4649
Species: Halorhabdus tiamatea (50%)
2 3262 bp 72.65 20.72 93.72
sw_5_scaffold_5922
Order: Halobacteriales (50%)
8 5610 bp 72.50 18.27 92.99
sw_5_scaffold_1537
Order: Halobacteriales (62.5%)
8 8484 bp 71.74 17.33 92.75
sw_5_scaffold_4282
Class: Halobacteria (60%)
5 3427 bp 73.13 16.08 92.73
sw_5_scaffold_1604
Order: Halobacteriales (75%)
4 5995 bp 71.91 15.88 92.23
sw_5_scaffold_2194
Order: Halobacteriales (50%)
6 5047 bp 71.69 18.51 92.19
sw_5_scaffold_5188
Class: Halobacteria (50%)
4 3040 bp 70.95 19.51 91.78
sw_5_scaffold_1083
Order: Halobacteriales (61.54%)
13 10745 bp 72.82 19.00 91.55
sw_5_scaffold_3355
Genus: Haloferax (50%)
6 9488 bp 71.44 16.73 91.35
sw_5_scaffold_2559
Order: Halobacteriales (63.64%)
11 11233 bp 73.25 17.82 90.19
sw_5_scaffold_3195
Class: Halobacteria (85.71%)
7 5712 bp 71.25 19.15 89.97
sw_5_scaffold_3037
Class: Halobacteria (66.67%)
12 9615 bp 72.83 17.87 89.83
sw_5_scaffold_1113
Order: Halobacteriales (60%)
10 10860 bp 72.64 17.93 89.03
sw_5_scaffold_3216
Order: Halobacteriales (50%)
4 4063 bp 70.64 19.20 88.97
sw_5_scaffold_3027
Order: Natrialbales (50%)
4 4197 bp 72.84 18.32 88.92
sw_5_scaffold_926
Class: Halobacteria (54.55%)
11 10757 bp 70.49 19.90 88.83
sw_5_scaffold_1588
Class: Halobacteria (71.43%)
14 14899 bp 69.09 15.71 88.80
sw_5_scaffold_1881
Order: Halobacteriales (80%)
5 5495 bp 72.14 17.27 88.44
sw_5_scaffold_3776
Genus: Natronomonas (50%)
4 3692 bp 70.94 14.98 88.33
sw_5_scaffold_6262
Order: Halobacteriales (66.67%)
3 3165 bp 72.07 16.40 88.25
sw_5_scaffold_2577
Order: Halobacteriales (52.94%)
17 14855 bp 73.07 17.58 88.13
sw_5_scaffold_2086
Order: Halobacteriales (73.68%)
19 17474 bp 70.86 19.55 87.82
sw_5_scaffold_7566
Species: Candidatus Halobonum tyrrellensis (50%)
4 3637 bp 72.15 18.37 87.68
sw_5_scaffold_4300
Order: Natrialbales (75%)
4 3420 bp 72.92 17.75 87.28
sw_5_scaffold_1410
Class: Halobacteria (75%)
32 26300 bp 72.11 17.26 87.25
sw_5_scaffold_257
Order: Halobacteriales (58.33%)
24 22182 bp 71.44 17.83 87.22
sw_5_scaffold_5777
Order: Halobacteriales (66.67%)
3 3351 bp 71.59 18.53 87.20
sw_5_scaffold_1752
Order: Halobacteriales (60%)
10 11121 bp 71.99 18.22 87.11
sw_5_scaffold_3618
Order: Halobacteriales (63.16%)
19 17545 bp 72.50 17.36 86.96
sw_5_scaffold_2115
Order: Halobacteriales (78.57%)
14 13461 bp 70.57 19.13 86.76
sw_5_scaffold_8309
Order: Halobacteriales (100%)
5 4694 bp 71.37 17.43 86.66
sw_5_scaffold_2625
Class: Halobacteria (50%)
4 4554 bp 73.45 17.41 86.43
sw_5_scaffold_2124
Order: Halobacteriales (60%)
5 5140 bp 71.17 17.51 86.32
sw_5_scaffold_3096
Order: Halobacteriales (62.5%)
8 9550 bp 70.73 19.33 85.48
sw_5_scaffold_3460
Order: Halobacteriales (71.43%)
7 6446 bp 71.10 18.06 85.03
sw_5_scaffold_2003
Order: Halobacteriales (58.82%)
17 20177 bp 70.88 19.20 84.72
sw_5_scaffold_2418
Class: Halobacteria (80%)
5 4788 bp 71.97 17.88 84.71
sw_5_scaffold_1299
Class: Halobacteria (66.67%)
12 7492 bp 73.29 18.01 84.69
sw_5_scaffold_1091
Class: Halobacteria (71.43%)
7 7950 bp 71.92 15.13 84.45
sw_5_scaffold_3158
Order: Halobacteriales (55.56%)
9 11260 bp 71.23 17.48 84.27
Displaying items 1-50 of 136 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.