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sw_6_scaffold_2218

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_2218_1
RIFOXYD1_FULL_RIF_OD1_10_39_35_curated, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(3..752)
DNA (750bp) protein (250aa)
Tax=RIFOXYD1_FULL_RIF_OD1_10_39_35_curated
sw_6_scaffold_2218_2
R_OD1_Giovannonibacteria_44_11, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(752..1135)
DNA (384bp) protein (128aa)
TspO and MBR-like protein; K07185 tryptophan-rich sensory protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Giovannonibacteria_44_11_curated
TspO and MBR like proteins; K07185 tryptophan-rich sensory protein id=138424 bin=ACD9 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=ACD9 organism_group=OD1-i organism_desc=OD1-i
TspO and MBR-like protein
sw_6_scaffold_2218_3

Not on your lists

comp(1513..1764)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Microgenomates bacterium SCGC AAA040-P11 RepID=UPI00037359AF
Uncharacterized protein {ECO:0000313|EMBL:KKL79503.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
sw_6_scaffold_2218_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(1849..2124)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EMN5_9CHLR
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
sw_6_scaffold_2218_5
R_OD1_Nomurabacteria_42_16, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(2236..2613)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Marinobacter nanhaiticus D15-8W RepID=N6W8C0_9ALTE
rhodanese domain-containing protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_42_16_curated
hypothetical protein
sw_6_scaffold_2218_6
unknown

Not on your lists

comp(2665..3852)
DNA (1188bp) protein (396aa)

This feature has no annotations

sw_6_scaffold_2218_7
GWF2_OD1_43_32, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3925..4563)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A182_9BACT
Formamidopyrimidine-DNA glycosylase {ECO:0000313|EMBL:KKT12940.1}; TaxID=1618643 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWF2_43_32.;"
5-hydroxymethyluracil DNA glycosylase
sw_6_scaffold_2218_8
Bacillus licheniformis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4532..4777)
DNA (246bp) protein (82aa)
mutM; formamidopyrimidine-DNA glycosidase MutM (EC:3.2.2.23 4.2.99.18)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020854}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule
5-hydroxymethyluracil DNA glycosylase n=1 Tax=Bacillus sp. CPSM8 RepID=V7QDL2_9BACI
sw_6_scaffold_2218_9
R_RIF_OD1_03_52_15, RIF-OD1-3, Parcubacteria, Bacteria

Not on your lists

comp(4801..5211)
DNA (411bp) protein (137aa)
UPI0003CDDC46 related cluster n=1 Tax=unknown RepID=UPI0003CDDC46
putative protein tyrosine phosphatase Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_03_52_15_curated
phosphotyrosine protein phosphatase
sw_6_scaffold_2218_10
RLO_OD1_Kaiserbacteria_45_26, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5319..6626)
DNA (1308bp) protein (436aa)
Lysozyme/muramidase, glycoside hydrolase family 25 (EC:3.2.1.17)
id=3846835 Tax=RIFCSPLOWO2_12_FULL_OD1_Kaiserbacteria_45_26_curated
fc32f04, wu:fc32f04; si:ch211-116m6.3 id=5802133 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
sw_6_scaffold_2218_11
GWF2_OD1_42_19, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(6613..7251)
DNA (639bp) protein (213aa)
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:KKS47393.1}; TaxID=1618659 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWF2_42_19.
RNA polymerase sigma factor, sigma-70 family id=15190917 bin=GWC1_OP11_49_16_COMPLETE species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
ECF subfamily RNA polymerase sigma-24 subunit
sw_6_scaffold_2218_12
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

7260..8279
DNA (1020bp) protein (340aa)
Doxx protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
sw_6_scaffold_2218_13
Listeria ivanovii, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8293..8895
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Actinopolyspora halophila RepID=UPI00035E73BD
Acid phosphatase {ECO:0000313|EMBL:AIS60031.1}; TaxID=202752 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria ivanovii subsp. londoniensis.;"
sw_6_scaffold_2218_14
unknown

Not on your lists

comp(8956..9135)
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying 14 items

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