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sw_6_scaffold_63

Search features with annotation key words

Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_63_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(3..782)
DNA (780bp) protein (260aa)
pyruvate dehydrogenase E1 component subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] id=24657899 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139, ECO:0000313|EMBL:CBH25108.1};; TaxID=761659 species="Bacteria; Bacteroidet
pdhA; Pyruvate dehydrogenase E1 component alpha subunit
sw_6_scaffold_63_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1118..1870
DNA (753bp) protein (251aa)
Glycosyl transferase, family 2 n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HAQ4_SALRM
wcaA; family 2 glycosyl transferase
Glycosyl transferase, family 2 {ECO:0000313|EMBL:CBH25109.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibact
sw_6_scaffold_63_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2365..3600
DNA (1236bp) protein (412aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446, ECO:0000313|EMBL:CBH25110.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes
Isocitrate dehydrogenase [NADP] n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HAQ5_SALRM
icd; isocitrate dehydrogenase
sw_6_scaffold_63_4
unknown

Not on your lists

3803..4183
DNA (381bp) protein (127aa)

This feature has no annotations

sw_6_scaffold_63_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

4329..5099
DNA (771bp) protein (257aa)
NUDIX family hydrolase
NUDIX family hydrolase id=24657902 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Hydrolase, NUDIX family protein {ECO:0000313|EMBL:ABC43664.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibac
sw_6_scaffold_63_6
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5147..5302)
DNA (156bp) protein (52aa)
Carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZHF3_9CLOT
Carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein {ECO:0000313|EMBL:CCQ98301.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
hydrogenase expression/formation protein HypE
sw_6_scaffold_63_7
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(5397..6017)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Halomonas lutea RepID=UPI00037E9938
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI15273.1}; Flags: Precursor;; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera rad
sw_6_scaffold_63_8
Caldivirga maquilingensis, Caldivirga, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

7034..7324
DNA (291bp) protein (97aa)
PEBP family protein n=1 Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=A8MBL1_CALMQ
PEBP family protein
PEBP family protein {ECO:0000313|EMBL:ABW02744.1}; TaxID=397948 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Caldivirga.;" source="Caldivirga maquilingensis (strai
sw_6_scaffold_63_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

7387..9459
DNA (2073bp) protein (691aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {EC
DNA ligase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7J3_SALRM
ligA; NAD-dependent DNA ligase
sw_6_scaffold_63_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10186..10593
DNA (408bp) protein (136aa)
GAF domain-containing protein
GAF domain-containing protein; K07170 GAF domain-containing protein id=24657565 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
GAF domain protein {ECO:0000313|EMBL:ABC45163.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (st
sw_6_scaffold_63_11
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10720..10959
DNA (240bp) protein (80aa)
RNA polymerase sigma factor SigW {ECO:0000313|EMBL:EZP79151.1}; TaxID=1295642 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus NUB
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily id=1891284 bin=GWE2_Bacteroidetes_42_39 species=Chitinophaga pinensis genus=Chitinophaga taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
sw_6_scaffold_63_12
unknown

Not on your lists

10956..11144
DNA (189bp) protein (63aa)

This feature has no annotations

sw_6_scaffold_63_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11164..12303
DNA (1140bp) protein (380aa)
Extracellular solute-binding protein, family 7 n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7H9_SALRM
extracellular solute-binding protein
Extracellular solute-binding protein, family 7 {ECO:0000313|EMBL:CBH23984.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" so
sw_6_scaffold_63_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12529..12798
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI00031D5567
protein of unknown function DUF433 Tax=RBG_16_Betaproteobacteria_64_18_curated
protein of unknown function DUF433
sw_6_scaffold_63_15
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

12795..13127
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B3D500
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACC84462.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
sw_6_scaffold_63_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

13259..14215
DNA (957bp) protein (319aa)
Predicted transcriptional regulator n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7H5_SALRM
transcriptional regulator
Predicted transcriptional regulator {ECO:0000313|EMBL:CBH23980.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salin
sw_6_scaffold_63_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

14232..15107
DNA (876bp) protein (292aa)
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7H4_SALRM
alpha/beta hydrolase
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) {ECO:0000313|EMBL:CBH23979.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodot
sw_6_scaffold_63_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(15198..15488)
DNA (291bp) protein (97aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
signal transduction histidine kinase, membrane
sensory transduction histidine kinase id=24657749 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
sw_6_scaffold_63_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16213..18252
DNA (2040bp) protein (680aa)
Vitamin B12 transporter btuB [Precursor] n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7H1_SALRM
btuB; vitamin B12 transporter btuB
Vitamin B12 transporter btuB [Precursor] {ECO:0000313|EMBL:CBH23976.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="
sw_6_scaffold_63_20
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18271..19422
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MGI3_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY49546.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source
sw_6_scaffold_63_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

19484..19699
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7G7_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23972.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_6_scaffold_63_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

19740..20489
DNA (750bp) protein (250aa)
Uncharacterized proteins, LmbE homolog n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7G6_SALRM
LmbE-like protein
Uncharacterized proteins, LmbE homolog {ECO:0000313|EMBL:CBH23971.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sa
sw_6_scaffold_63_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20596..21675
DNA (1080bp) protein (360aa)
signal transduction histidine kinase, membrane; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] id=24657741 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
signal transduction histidine kinase, membrane
sw_6_scaffold_63_24
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

21902..22318
DNA (417bp) protein (139aa)
Chaperonin, 10 kDa n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S485_SALRD
groS; chaperonin, 10 kDa
Chaperonin, 10 kDa {ECO:0000313|EMBL:ABC43606.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (st
sw_6_scaffold_63_25
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(22340..24172)
DNA (1833bp) protein (611aa)
hypothetical protein
hypothetical protein id=24657737 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Putative membrane protein {ECO:0000313|EMBL:ABC45600.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ru
sw_6_scaffold_63_26
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(24429..25187)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7G0_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23965.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_6_scaffold_63_27
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(25216..26082)
DNA (867bp) protein (289aa)
hypothetical protein id=24657735 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23964.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_6_scaffold_63_28
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(26196..26993)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7F8_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23963.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_6_scaffold_63_29
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(27106..28602)
DNA (1497bp) protein (499aa)
gltX; glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=24659757 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rul
gltX; glutamyl-tRNA synthetase
sw_6_scaffold_63_30
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

28960..30963
DNA (2004bp) protein (668aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherm
PPIC-type PPIASE domain protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA75_SALRM
PPIC-type PPIASE domain-containing protein
Displaying items 1-30 of 39 in total

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