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S_p1_S3_coassembly_k141_1581202

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1581202_1
uncultured delta proteobacterium HF4000_08N17, Deltaproteobacteria, Proteobacteria, Bacteria

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3..1136
DNA (1134bp) protein (378aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; species="Bacteria; Proteobacteria; Deltaproteobacteria; environmental samples.;" source="uncultured delta proteobacterium HF4000_08N17.;"
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
carbamoyl phosphate synthase small subunit Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002884875
S_p1_S3_coassembly_k141_1581202_2
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

comp(1188..1865)
DNA (678bp) protein (226aa)
Transcriptional regulator, Crp/Fnr family Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LG24_HALO1
Crp/Fnr family transcriptional regulator
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_1581202_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2066..2677
DNA (612bp) protein (204aa)
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_16_RIF_WS3X_71_46_curated
S_p1_S3_coassembly_k141_1581202_4
unknown

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2683..2958
DNA (276bp) protein (92aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1581202_5
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3147..4214)
DNA (1068bp) protein (356aa)
Peptide chain release factor 1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CJT5_SYNLT
peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
S_p1_S3_coassembly_k141_1581202_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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comp(4236..4445)
DNA (210bp) protein (70aa)
50S ribosomal protein L31 Tax=Nitrosospira sp. APG3 RepID=M5DKD4_9PROT
50S ribosomal protein L31
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
S_p1_S3_coassembly_k141_1581202_7
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4586..5947)
DNA (1362bp) protein (454aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
transcription termination factor Rho Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628AC6
transcription termination factor Rho
S_p1_S3_coassembly_k141_1581202_8
unknown

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comp(6495..7859)
DNA (1365bp) protein (455aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000288D1D7
S_p1_S3_coassembly_k141_1581202_9
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(7993..8505)
DNA (513bp) protein (171aa)
pantetheine-phosphate adenylyltransferase bin=GWA2__Bacteriovorax-rel_49_15 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
coaD; pantetheine-phosphate adenylyltransferase
Tax=GWA2_Bdellovibrionales_49_15_curated
S_p1_S3_coassembly_k141_1581202_10
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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comp(8644..10464)
DNA (1821bp) protein (607aa)
Phosphoglucomutase/phosphomannomutase bin=GWF2_Nitrospirae_44_13 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
phosphoglucomutase/phosphomannomutase family protein
Tax=RBG_16_Nitrospirae_43_8_curated
S_p1_S3_coassembly_k141_1581202_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10575..11861)
DNA (1287bp) protein (429aa)
CinA-like protein {ECO:0000256|HAMAP-Rule:MF_00226}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
CinA-like protein bin=GWF2_Methylomirabilis_70_14 species=Shewanella sediminis genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
competence/damage-inducible protein CinA
S_p1_S3_coassembly_k141_1581202_12
RLO_PLX_64_10, Bacteria

Not on your lists

comp(11928..12974)
DNA (1047bp) protein (349aa)
dehydrogenase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
S_p1_S3_coassembly_k141_1581202_13
RLO_PLX_64_10, Bacteria

Not on your lists

comp(13453..14499)
DNA (1047bp) protein (349aa)
Uncharacterized protein Tax=Lentisphaera araneosa HTCC2155 RepID=A6DP39_9BACT
dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
S_p1_S3_coassembly_k141_1581202_14
Eimeria acervulina, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

Not on your lists

comp(14620..16044)
DNA (1425bp) protein (475aa)
Uncharacterized protein Tax=Eimeria acervulina RepID=U6GVK6_EIMAC
Uncharacterized protein {ECO:0000313|EMBL:CDI83323.1}; species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeria acervulina (Coccidian parasite).;"
S_p1_S3_coassembly_k141_1581202_15
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16293..17198
DNA (906bp) protein (302aa)
Thioredoxin domain protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CW06_MYXXD
Thioredoxin domain protein {ECO:0000313|EMBL:ABF89418.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
DSBA oxidoreductase
S_p1_S3_coassembly_k141_1581202_16
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17230..19074)
DNA (1845bp) protein (615aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AB-629-O05 RepID=UPI00037FF741
acyl-CoA dehydrogenase
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
S_p1_S3_coassembly_k141_1581202_17
unknown

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comp(19499..20161)
DNA (663bp) protein (221aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1581202_18
unknown

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20515..20700
DNA (186bp) protein (62aa)

This feature has no annotations

Displaying 18 items

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