ggKbase home page

S_p2_S4_coassembly_k141_1348171

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_1348171_1
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

1..1044
DNA (1044bp) protein (348aa)
hypothetical protein Tax=Microchaete sp. PCC 7126 RepID=UPI00034BFE86
Radical SAM protein {ECO:0000313|EMBL:KIJ74531.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
radical SAM protein
S_p2_S4_coassembly_k141_1348171_2
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1286..2785
DNA (1500bp) protein (500aa)
PMT family 4-amino-4-deoxy-L-arabinose transferase/glycosyltransferase Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R091_PIRSD
PMT family 4-amino-4-deoxy-L-arabinose transferase/glycosyltransferase
PMT family 4-amino-4-deoxy-L-arabinose transferase/glycosyltransferase {ECO:0000313|EMBL:ADB14759.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
S_p2_S4_coassembly_k141_1348171_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

3046..4722
DNA (1677bp) protein (559aa)
Copper resistance D domain protein bin=GWC2_Methylomirabilis_70_16 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
copper resistance D domain-containing protein
Tax=GWC2_Rokubacteria_70_16_curated
S_p2_S4_coassembly_k141_1348171_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

4779..5450
DNA (672bp) protein (224aa)
haloacid dehalogenase, type II; K01560 2-haloacid dehalogenase [EC:3.8.1.2] bin=bin1_lowGC species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
dehII; haloacid dehalogenase (EC:3.8.1.2)
Tax=CSP1_2_Dadabacteria
S_p2_S4_coassembly_k141_1348171_5
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

5988..8054
DNA (2067bp) protein (689aa)
Uncharacterized protein Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QXB4_PIRSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB17954.1}; Flags: Precursor;; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
S_p2_S4_coassembly_k141_1348171_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

8426..8785
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJM6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69611.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1348171_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

8832..9560
DNA (729bp) protein (243aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJM5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69610.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1348171_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

9857..10117
DNA (261bp) protein (87aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJM4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69609.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1348171_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

10114..10611
DNA (498bp) protein (166aa)
Cytidyltransferase-related domain Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJM3_9BACT
cytidyltransferase-related domain
Cytidyltransferase-related domain {ECO:0000313|EMBL:CBE69608.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1348171_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

10639..14073
DNA (3435bp) protein (1145aa)
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Transcription-repair-coupling factor Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJM2_9BACT
S_p2_S4_coassembly_k141_1348171_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

14070..15128
DNA (1059bp) protein (353aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative PpiC-type peptidyl-prolyl cis-trans isomerase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJM1_9BACT
PpiC-type peptidyl-prolyl cis-trans isomerase
S_p2_S4_coassembly_k141_1348171_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(15178..15693)
DNA (516bp) protein (172aa)
def; peptide deformylase (PDF) (Polypeptide deformylase) (EC:3.5.1.31)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Peptide deformylase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJM0_9BACT
S_p2_S4_coassembly_k141_1348171_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(15705..16802)
DNA (1098bp) protein (366aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
tRNA N6-adenosine threonylcarbamoyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJL9_9BACT
O-sialoglycoprotein endopeptidase, with actin-like ATPase domain (ygjD,gcp)
S_p2_S4_coassembly_k141_1348171_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(16877..18220)
DNA (1344bp) protein (448aa)
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102)
Carboxy-terminal-processing protease (C-terminal-processing protease) {ECO:0000313|EMBL:CBE69603.1}; EC=3.4.21.102 {ECO:0000313|EMBL:CBE69603.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Carboxy-terminal-processing protease (C-terminal-processing protease) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJL8_9BACT
S_p2_S4_coassembly_k141_1348171_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(18324..19568)
DNA (1245bp) protein (415aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJL7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69602.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1348171_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(19579..20475)
DNA (897bp) protein (299aa)
Cell division protein FtsX Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJL6_9BACT
Cell division protein FtsX
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1348171_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(20563..21225)
DNA (663bp) protein (221aa)
Cell division ABC transpoter (ATP-binding protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJL5_9BACT
ftsE; cell division ABC transporter ATP-binding protein
Cell division ABC transpoter (ATP-binding protein) {ECO:0000313|EMBL:CBE69600.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1348171_18
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21582..22586
DNA (1005bp) protein (335aa)
Initiation factor 2B related Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NL59_ROSCS
initiation factor 2B-like protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
S_p2_S4_coassembly_k141_1348171_19
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22583..23236)
DNA (654bp) protein (218aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX09054.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
ATP-dependent protease La bin=GWC2_Methylomirabilis_70_24 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptidase S16 lon domain-containing protein
S_p2_S4_coassembly_k141_1348171_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(23226..24128)
DNA (903bp) protein (301aa)
nfo; endonuclease 4 (Endonuclease IV) (Endodeoxyribonuclease IV) (EC:3.1.21.2)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152, ECO:0000313|EMBL:CBE69599.1};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Probable endonuclease 4 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJL4_9BACT
S_p2_S4_coassembly_k141_1348171_21
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(24158..24397)
DNA (240bp) protein (80aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJL3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69598.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1348171_22
R_NC10_66_22, NC10, Bacteria

Not on your lists

24793..26571
DNA (1779bp) protein (593aa)
AAA ATPase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin3_NC10 organism_group=NC10
AAA ATPase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
S_p2_S4_coassembly_k141_1348171_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

26575..27378
DNA (804bp) protein (268aa)
id=14429686 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
S_p2_S4_coassembly_k141_1348171_24
CSP1_5_NC10, NC10, Bacteria

Not on your lists

27378..28049
DNA (672bp) protein (224aa)
alias=gwe2_scaffold_1565_14 bin=bin3_NC10 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
S_p2_S4_coassembly_k141_1348171_25
R_NC10_66_22, NC10, Bacteria

Not on your lists

28065..28778
DNA (714bp) protein (238aa)
alias=gwe2_scaffold_1565_13 bin=bin3_NC10 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=bin3_NC10 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
S_p2_S4_coassembly_k141_1348171_26
CSP1_5_NC10, NC10, Bacteria

Not on your lists

28775..29047
DNA (273bp) protein (91aa)
id=14431059 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
transcriptional regulator
Tax=CSP1_5_NC10
S_p2_S4_coassembly_k141_1348171_27
CSP1_5_NC10, NC10, Bacteria

Not on your lists

29189..29857
DNA (669bp) protein (223aa)
hypothetical protein bin=bin3_NC10 species=Endozoicomonas elysicola genus=Endozoicomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
S_p2_S4_coassembly_k141_1348171_28
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

29970..31025
DNA (1056bp) protein (352aa)
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase activating enzyme {ECO:0000313|EMBL:CBE69571.1}; EC=1.97.1.4 {ECO:0000313|EMBL:CBE69571.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Pyruvate formate-lyase activating enzyme Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJI6_9BACT
S_p2_S4_coassembly_k141_1348171_29
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

31552..33141
DNA (1590bp) protein (530aa)
ABC transporter, ATPase subunit Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJI3_9BACT
ABC transporter ATPase
ABC transporter, ATPase subunit {ECO:0000313|EMBL:CBE69568.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1348171_30
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

33138..34919
DNA (1782bp) protein (594aa)
ABC-type multidrug/protein/lipid transport system, ATPase component Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJI2_9BACT
MdlB; ABC-type multidrug/protein/lipid transport system, ATPase component
ABC-type multidrug/protein/lipid transport system, ATPase component {ECO:0000313|EMBL:CBE69567.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Displaying items 1-30 of 64 in total

View Taxonomy