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ACD1_66_11

Organism: ACD1

near complete RP 51 / 55 MC: 12 BSCG 49 / 51 MC: 2 ASCG 0 / 38
Location: comp(5076..5861)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 34.6
  • Coverage: 191.0
  • Bit_score: 127
  • Evalue 6.60e-27
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=91 to=255 evalue=3.0e-44 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 2.94e-44
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=70 to=181 evalue=2.5e-22 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 2.50e-22

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Taxonomy

GWC2_OD1-i_37_82 → Moranbacteria → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 786
ATGGCGATACTATATTATATGGTATTGAAATCAAAAAGTCTACCCCTGGCTGAATCTCCAACAAGAATCAAAAGATCAGTCGGAATAATGAAAGTGCATCTCCGTCGAGCGACTGATTCTCCATGGAAATCTACTAAAATGAAGAGAATTCTAGCGGAGCCCATTGCGGCGCCGCAGTCGCTTATGTTTTACAGGCGAAGCACTGATATCGAACGTTGCGCAGATCTCACCGACGGCGAACTCATAGAGGTGATCCACACTCAAAACAGGGAAGCATACAAGGAACTTTTTGCCCGCTATCAAAAAAAACTTTTCACCTACATCTTTCACTTGGTTGGAAATCGTGACGAAACAGAGGACATCCTGCAAAACGTTTTCCAAAAGACCTTCAAGAACATCGAACATTTCGACACTTCCAGGAAGTTTTCTTCTTGGATTTATCGTATCGCGCACAATGAAGCGGTCAATTTTTTGAAAAGAAAAAGCAAAAGGTACACGGTTTCCTGGGAGGATGTCTCAACCAGCAAAGACAAGCTCGACACGGCAACAAATGAAGAACCTCCGGAAGATAAATTTTTCAGAGAAGAAGTGGTCAAGGAAGTTGACGAAGCTTTGGCCAGGCTTCCAAAAAAATATCAGCAGGTGTTGAAGCTTCGATATTTTCAAGAATATTCCTATGATGTGATCAGTGGCATCCTCAACAAGCCGGTCAACACTGTCGGCACATTGATCAACAGAGCTAAAAGAAAATTGTTGGAAGTTGTGGAACAGGGGAATAAGAGATAG
PROTEIN sequence
Length: 262
MAILYYMVLKSKSLPLAESPTRIKRSVGIMKVHLRRATDSPWKSTKMKRILAEPIAAPQSLMFYRRSTDIERCADLTDGELIEVIHTQNREAYKELFARYQKKLFTYIFHLVGNRDETEDILQNVFQKTFKNIEHFDTSRKFSSWIYRIAHNEAVNFLKRKSKRYTVSWEDVSTSKDKLDTATNEEPPEDKFFREEVVKEVDEALARLPKKYQQVLKLRYFQEYSYDVISGILNKPVNTVGTLINRAKRKLLEVVEQGNKR*