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ACD30_22

Alias: ACD30_22816.15472.9

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD30_22_1
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(102..614)
DNA (513bp) protein (171aa)
102..614 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKQ09843.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_22_2
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

697..2574
DNA (1878bp) protein (626aa)
seg (db=Seg db_id=seg from=529 to=544)
seg (db=Seg db_id=seg from=392 to=409)
seg (db=Seg db_id=seg from=130 to=153)
seg (db=Seg db_id=seg from=75 to=93)
ACD30_22_3
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

2571..2843
DNA (273bp) protein (91aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=7 to=23)
Uncharacterized protein {ECO:0000313|EMBL:KKQ09841.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_22_4
RHI_OP11_Daviesbacteria_37_16, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

2856..3164
DNA (309bp) protein (103aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=45)
seg (db=Seg db_id=seg from=30 to=42)
transmembrane_regions 26..45 Tax=RIFCSPHIGHO2_12_FULL_OP11_Daviesbacteria_37_16_curated
ACD30_22_5
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

3161..3814
DNA (654bp) protein (218aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
seg (db=Seg db_id=seg from=7 to=23)
Uncharacterized protein {ECO:0000313|EMBL:KKQ09839.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_22_6
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

3842..4156
DNA (315bp) protein (105aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Uncharacterized protein {ECO:0000313|EMBL:KKQ09838.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_22_7
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

4165..4512
DNA (348bp) protein (116aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
seg (db=Seg db_id=seg from=29 to=50)
seg (db=Seg db_id=seg from=57 to=71)
seg (db=Seg db_id=seg from=88 to=105)
ACD30_22_8
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(4509..5477)
DNA (969bp) protein (323aa)
alr; alanine racemase (EC:5.1.1.1)
seg (db=Seg db_id=seg from=171 to=184)
seg (db=Seg db_id=seg from=243 to=254)
Alanine racemase C-terminal domain-like (db=superfamily db_id=SSF50621 from=165 to=321 evalue=7.0e-36 interpro_id=IPR009006 interpro_description=Alanine racemase/group IV decarboxylase, C-terminal GO=Molecular Function: catalytic activity (GO:0003824))
ACD30_22_9
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(5798..6829)
DNA (1032bp) protein (344aa)
gap; Glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
gap; Glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTI7_9BACT (db=UNIREF evalue=3.0e-94 bit_score=348.0 identity=54.41 coverage=96.5116279069768)
seg (db=Seg db_id=seg from=214 to=225)
ACD30_22_10
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(6871..7308)
DNA (438bp) protein (146aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=8 to=19)
Uncharacterized protein {ECO:0000313|EMBL:KKQ09834.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_22_11
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(7314..8501)
DNA (1188bp) protein (396aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
seg (db=Seg db_id=seg from=2 to=16)
seg (db=Seg db_id=seg from=267 to=277)
Uncharacterized protein {ECO:0000313|EMBL:KKQ09833.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_22_12

Not on your lists

8933..9121
DNA (189bp) protein (63aa)
8933..9121 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD91307.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD30_22_13

Not on your lists

9206..9616
DNA (411bp) protein (137aa)
9206..9616 + (rbs_motif=TAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD91308.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD30_22_14
RHI_OP11_Daviesbacteria_37_16, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

9687..10670
DNA (984bp) protein (328aa)
RpoD subfamily RNA polymerase sigma-70 subunit
coiled-coil (db=Coil db_id=coil from=85 to=106 evalue=NA)
SIGMA70_1 (db=PatternScan db_id=PS00715 from=123 to=136 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=32 to=169 evalue=4.7e-48 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD30_22_15
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(10667..11758)
DNA (1092bp) protein (364aa)
dacF; putative D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
no description (db=Gene3D db_id=G3DSA:3.40.710.10 from=76 to=341 evalue=9.0e-54)
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=9 to=341 evalue=8.0e-52 interpro_id=IPR012338 interpro_description=Beta-lactamase-type transpeptidase fold)
ACD30_22_16
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(11891..13222)
DNA (1332bp) protein (444aa)
Glycoside hydrolase family 18
Glycosyl hydrolase, family 18 n=1 Tax=uncultured marine bacterium 159 RepID=Q6SHW7_9BACT (db=UNIREF evalue=5.0e-33 bit_score=145.0 identity=29.34 coverage=76.8018018018018)
seg (db=Seg db_id=seg from=308 to=327)
seg (db=Seg db_id=seg from=23 to=36)
ACD30_22_17
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(13373..14287)
DNA (915bp) protein (305aa)
Substrate-binding protein of ABC transporter n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL99_9BACT (db=UNIREF evalue=2.0e-64 bit_score=249.0 identity=42.3 coverage=97.7049180327869)
periplasmic binding protein
"Helical backbone" metal receptor (db=superfamily db_id=SSF53807 from=2 to=285 evalue=2.9e-36)
Peripla_BP_2 (db=HMMPfam db_id=PF01497 from=3 to=238 evalue=8.8e-31 interpro_id=IPR002491 interpro_description=Periplasmic binding protein GO=Molecular Function: iron ion transmembrane transporter activity (GO:0005381), Biological Process: high-affinity iron ion transport (GO:0006827))
ACD30_22_18
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

14362..14946
DNA (585bp) protein (195aa)
14362..14946 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKQ09827.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
Displaying 18 items

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