ggKbase home page

AMDSBAU_11

Alias: SULFO_OTHER_11

Search features with annotation key words

Displaying 29 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_11_1
unknown

Not on your lists

1..102
DNA (102bp) protein (34aa)
1..102 + ( gc_cont=0.441)
AMDSBAU_11_2
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

479..2632
DNA (2154bp) protein (718aa)
DNA topoisomerase III
DNA topoisomerase III
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=767817 species="Bacteria; Firmicute
DNA topoisomerase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=G6I0F5_9FIRM (db=UNIREF evalue=9.4e-166 bit_score=589.7 identity=46.6 coverage=95.68245125348189)
AMDSBAU_11_3
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

2743..3057
DNA (315bp) protein (105aa)
ISChy9, transposase orfA n=2 Tax=Nodularia spumigena CCY9414 RepID=A0ZBJ1_NODSP (db=UNIREF evalue=6.8e-41 bit_score=172.2 identity=78.8 coverage=98.09523809523809)
ISChy9, transposase orfA
ISChy9, transposase orfA {ECO:0000313|EMBL:ABB14389.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydoth
(db=HMMPfam db_id=PF01797 from=5 to=101 evalue=2.7e-32 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
AMDSBAU_11_4
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3014..5596
DNA (2583bp) protein (861aa)
Transposase, IS605 OrfB family {ECO:0000313|EMBL:EJY57273.1}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus hesper
Transposase, IS605 OrfB family n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HRP5_9BACL
Transposase, IS605 OrfB family n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HRP5_9BACL (db=UNIREF evalue=8.8e-187 bit_score=659.8 identity=80.0 coverage=46.68989547038328)
transposase, IS605 OrfB family
AMDSBAU_11_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5769..7550)
DNA (1782bp) protein (594aa)
beta-glucosidase (EC:3.2.1.21)
Glycoside hydrolase family 3 protein {ECO:0000313|EMBL:AEJ40101.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;"
Glycoside hydrolase family 3 protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I8J9_SULAT (db=UNIREF evalue=1.7e-184 bit_score=651.7 identity=64.6 coverage=84.006734006734)
seg (db=Seg db_id=seg from=218 to=229)
AMDSBAU_11_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7684..8628)
DNA (945bp) protein (315aa)
aldose 1-epimerase rbh
aldose 1-epimerase rbh
Uncharacterized protein {ECO:0000313|EMBL:AEJ40102.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I8K0_SULAT
AMDSBAU_11_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8625..10082)
DNA (1458bp) protein (486aa)
xylulokinase
xylulokinase
Xylulokinase n=2 Tax=Sulfobacillus acidophilus RepID=F8I8K1_SULAT
Xylulokinase {ECO:0000313|EMBL:AEJ40103.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacillus ac
AMDSBAU_11_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10093..11232)
DNA (1140bp) protein (380aa)
xylA; xylose isomerase
xylA; xylose isomerase
Xylose isomerase n=2 Tax=Sulfobacillus acidophilus RepID=F8I8K2_SULAT
Xylose isomerase {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511}; EC=5.3.1.5 {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511};; TaxID=1051632 species="Bacteria; Firmicutes
AMDSBAU_11_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12137..13309
DNA (1173bp) protein (391aa)
MarR family transcriptional regulator (EC:2.7.1.2) rbh
MarR family transcriptional regulator (EC:2.7.1.2) rbh
Transcriptional regulator, MarR family n=2 Tax=Sulfobacillus acidophilus RepID=G8TSZ7_SULAD
Uncharacterized protein {ECO:0000313|EMBL:AEW05612.1}; EC=2.7.1.2 {ECO:0000313|EMBL:AEW05612.1};; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Ince
AMDSBAU_11_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13321..14154)
DNA (834bp) protein (278aa)
multi-copper enzyme maturation ABC transporter permease rbh
multi-copper enzyme maturation ABC transporter permease rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW05809.1}; Flags: Precursor;; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillu
ABC-type transport system involved in multi-copper enzyme maturation, permease component n=2 Tax=Sulfobacillus acidophilus RepID=G8TUT5_SULAD
AMDSBAU_11_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14155..15075)
DNA (921bp) protein (307aa)
ABC transporter
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:AEJ39501.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" sourc
ABC transporter related protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I397_SULAT
AMDSBAU_11_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15072..16115)
DNA (1044bp) protein (348aa)
Putative transmembrane anti-sigma factor n=2 Tax=Sulfobacillus acidophilus RepID=F8I393_SULAT (db=UNIREF evalue=4.5e-81 bit_score=307.4 identity=47.1 coverage=95.6896551724138)
hypothetical protein
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUU0_SULAD
AMDSBAU_11_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16112..16633)
DNA (522bp) protein (174aa)
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEJ39496.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfob
RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sulfobacillus acidophilus RepID=F8I392_SULAT (db=UNIREF evalue=4.4e-53 bit_score=213.4 identity=67.9 coverage=90.80459770114942)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=95 to=157 evalue=0.00012 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBAU_11_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16910..18238
DNA (1329bp) protein (443aa)
major facilitator superfamily protein rbh
major facilitator superfamily protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW04311.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Major facilitator superfamily MFS_1 n=2 Tax=Sulfobacillus acidophilus RepID=F8I7H5_SULAT
AMDSBAU_11_15
Candidatus Acidianus copahuensis, Acidianus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(18088..19332)
DNA (1245bp) protein (415aa)
Mannonate dehydratase {ECO:0000313|EMBL:EZQ11396.1}; TaxID=1160895 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Acidianus.;" source="Candidatus Acidianus copahuensis.;"
hypothetical protein
hypothetical protein
UPI000038E593 related cluster n=1 Tax=unknown RepID=UPI000038E593
AMDSBAU_11_16
Bacillus hemicellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19361..20206)
DNA (846bp) protein (282aa)
D-mannonate oxidoreductase {ECO:0000313|EMBL:GAE31024.1}; TaxID=1236971 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus hemicellulosilyticus JCM 9152.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paenibacillus lactis 154 RepID=G4HCT3_9BACL
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paenibacillus lactis 154 RepID=G4HCT3_9BACL (db=UNIREF evalue=6.9e-96 bit_score=356.3 identity=61.5 coverage=98.22695035460993)
uxuB; UxuB protein
AMDSBAU_11_17
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20244..22310)
DNA (2067bp) protein (689aa)
alpha-glucuronidase
alpha-glucuronidase
Xylan alpha-1,2-glucuronidase {ECO:0000256|RuleBase:RU361198}; EC=3.2.1.131 {ECO:0000256|RuleBase:RU361198};; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermob
Alpha-glucuronidase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EGR1_THECK
AMDSBAU_11_18
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22423..23265)
DNA (843bp) protein (281aa)
Uncharacterized protein {ECO:0000313|EMBL:KEP24696.1}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
binding-protein-dependent transport systems inner membrane component n=1 Tax=Nesterenkonia sp. F RepID=UPI000255D06F (db=UNIREF evalue=3.5e-52 bit_score=211.1 identity=38.8 coverage=93.59430604982207)
binding-protein-dependent transport systems inner membrane component
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
AMDSBAU_11_19
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23296..24225)
DNA (930bp) protein (310aa)
Trehalose transport system permease protein SugA {ECO:0000313|EMBL:KJQ55437.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacter
binding-protein-dependent transport systems inner membrane component n=1 Tax=Nesterenkonia sp. F RepID=UPI000255D070 (db=UNIREF evalue=1.3e-47 bit_score=196.1 identity=38.8 coverage=91.29032258064517)
putative sugar transport integral membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=278 to=300)
AMDSBAU_11_20
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24285..25517)
DNA (1233bp) protein (411aa)
Uncharacterized protein {ECO:0000313|EMBL:KHL04705.1}; Flags: Fragment;; TaxID=1338436 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
sugar ABC transporter substrate-binding protein n=1 Tax=Nesterenkonia sp. F RepID=UPI000255D071 (db=UNIREF evalue=1.4e-52 bit_score=213.0 identity=33.2 coverage=89.29440389294405)
sugar ABC transporter substrate-binding protein
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=21 to=410 evalue=2.8e-61)
AMDSBAU_11_21
Bacillus halodurans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25625..26878)
DNA (1254bp) protein (418aa)
UPI0002893FFB related cluster n=1 Tax=unknown RepID=UPI0002893FFB
hypothetical protein PJC66_19766 n=1 Tax=Paenibacillus sp. JC66 RepID=UPI0002893FFB (db=UNIREF evalue=5.0e-103 bit_score=380.6 identity=47.3 coverage=95.69377990430623)
hypothetical protein
hypothetical protein
AMDSBAU_11_22
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26898..27602)
DNA (705bp) protein (235aa)
Uncharacterized protein {ECO:0000313|EMBL:EPZ43475.1}; TaxID=1356854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidoterrestr
GntR family transcriptional regulator
Transcriptional regulator, GntR family n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HH72_9BACL (db=UNIREF evalue=7.6e-48 bit_score=196.4 identity=47.3 coverage=93.19148936170212)
no description (db=HMMSmart db_id=SM00895 from=86 to=216 evalue=1.9e-11 interpro_id=IPR011711 interpro_description=GntR, C-terminal)
AMDSBAU_11_23
unknown

Not on your lists

27691..28023
DNA (333bp) protein (111aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBAU_11_24
Caldanaerobius polysaccharolyticus, Caldanaerobius, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28096..30441)
DNA (2346bp) protein (782aa)
Xyl3A {ECO:0000313|EMBL:AFM44649.1}; EC=3.2.1.37 {ECO:0000313|EMBL:AFM44649.1};; TaxID=44256 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobius.
Xyl3A n=1 Tax=Caldanaerobius polysaccharolyticus RepID=I6R6X6_9THEO
Xyl3A n=1 Tax=Caldanaerobius polysaccharolyticus RepID=I6R6X6_9THEO (db=UNIREF evalue=1.3e-269 bit_score=934.9 identity=59.0 coverage=98.72122762148338)
glycoside hydrolase family 3 domain-containing protein
AMDSBAU_11_25
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30744..31739)
DNA (996bp) protein (332aa)
oligopeptide/dipeptide ABC transporter, ATPase subunit
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:AEE44610.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulom
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Cellulomonas fimi ATCC 484 RepID=F4H853_CELFA (db=UNIREF evalue=1.3e-69 bit_score=269.2 identity=47.1 coverage=97.89156626506023)
seg (db=Seg db_id=seg from=316 to=328)
AMDSBAU_11_26
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(31714..32703)
DNA (990bp) protein (330aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:EFH83587.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobactera
peptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q609_CATAD (db=UNIREF evalue=1.6e-75 bit_score=288.9 identity=45.5 coverage=94.54545454545455)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=152 to=166 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBAU_11_27
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(32700..33620)
DNA (921bp) protein (307aa)
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACU53142.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae;
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M244_ACIFD (db=UNIREF evalue=3.3e-83 bit_score=314.3 identity=55.8 coverage=87.29641693811075)
transmembrane_regions (db=TMHMM db_id=tmhmm from=269 to=291)
AMDSBAU_11_28
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(33613..34626)
DNA (1014bp) protein (338aa)
binding-protein-dependent transport systems inner membrane component
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M243_ACIFD
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACU53141.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae;
AMDSBAU_11_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34699..35991)
DNA (1293bp) protein (431aa)
family 5 extracellular solute-binding protein
Uncharacterized protein {ECO:0000313|EMBL:AEW05515.1}; Flags: Precursor;; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillu
Extracellular solute-binding protein family 5 n=2 Tax=Sulfobacillus acidophilus RepID=F8I7D1_SULAT (db=UNIREF evalue=7.8e-83 bit_score=313.5 identity=37.0 coverage=97.6798143851508)
seg (db=Seg db_id=seg from=284 to=295)
Displaying 29 items

View Taxonomy