ggKbase home page

AMDSBAU_11_13
Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
67.9 159.0 213 3.60e-53 sap:Sulac_2347
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEJ39496.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfob UNIPROT
DB: UniProtKB
67.9 159.0 213 1.80e-52 F8I392_SULAT
RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sulfobacillus acidophilus RepID=F8I392_SULAT (db=UNIREF evalue=4.4e-53 bit_score=213.4 identity=67.9 coverage=90.80459770114942) similarity UNIREF
DB: UNIREF
67.0 90.0 213 4.00e+00 sap:Sulac_2347
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=95 to=157 evalue=0.00012 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
0.0 0.0 0 1.20e-04 sap:Sulac_2347
(db=HMMPfam db_id=PF04542 from=11 to=74 evalue=1.3e-11 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 1.00e+00 sap:Sulac_2347
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=2 to=79 evalue=2.8e-10) iprscan interpro
DB: Gene3D
0.0 0.0 0 2.00e+00 sap:Sulac_2347
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=95 to=162 evalue=3.8e-14 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Functi iprscan interpro
DB: superfamily
0.0 0.0 0 3.00e+00 sap:Sulac_2347
(db=HMMPfam db_id=PF08281 from=103 to=155 evalue=6.2e-10 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 6.00e+00 sap:Sulac_2347
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=72 evalue=6.3e-14 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor iprscan interpro
DB: superfamily
0.0 0.0 0 6.00e+00 sap:Sulac_2347
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=6 to=159 evalue=9.1e-33 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:001698 iprscan interpro
DB: HMMTigr
0.0 0.0 0 9.00e+00 sap:Sulac_2347