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AMDSBAU_11

Alias: SULFO_OTHER_11

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_11_1
unknown

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1..102
-----------------
DNA (102bp)
protein (34aa)
1..102 + ( gc_cont=0.441)
AMDSBAU_11_2
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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479..2632
-----------------
DNA (2154bp)
protein (718aa)
DNA topoisomerase III
DNA topoisomerase III
DNA topoisomerase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=G6I0F5_9FIRM (db=UNIREF evalue=9.4e-166 bit_score=589.7 identity=46.6 coverage=95.68245125348189)
TOPOISOMERASE_I_PROK (db=PatternScan db_id=PS00396 from=314 to=328 evalue=0.0 interpro_id=IPR023406 interpro_description=DNA topoisomerase, type IA, active site GO=Molecular Function: DNA topoisomerase type I activity (GO:0003917))
AMDSBAU_11_3
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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2743..3057
-----------------
DNA (315bp)
protein (105aa)
ISChy9, transposase orfA n=2 Tax=Nodularia spumigena CCY9414 RepID=A0ZBJ1_NODSP (db=UNIREF evalue=6.8e-41 bit_score=172.2 identity=78.8 coverage=98.09523809523809)
ISChy9, transposase orfA
(db=HMMPfam db_id=PF01797 from=5 to=101 evalue=2.7e-32 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Transposase IS200-like (db=superfamily db_id=SSF143422 from=1 to=103 evalue=3.7e-31 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
AMDSBAU_11_4
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3014..5596
-----------------
DNA (2583bp)
protein (861aa)
Transposase, IS605 OrfB family n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HRP5_9BACL
Transposase, IS605 OrfB family n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HRP5_9BACL (db=UNIREF evalue=8.8e-187 bit_score=659.8 identity=80.0 coverage=46.68989547038328)
transposase, IS605 OrfB family
transposase, IS605 OrfB family
AMDSBAU_11_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5769..7550)
-----------------
DNA (1782bp)
protein (594aa)
beta-glucosidase (EC:3.2.1.21)
Glycoside hydrolase family 3 protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I8J9_SULAT (db=UNIREF evalue=1.7e-184 bit_score=651.7 identity=64.6 coverage=84.006734006734)
seg (db=Seg db_id=seg from=218 to=229)
seg (db=Seg db_id=seg from=453 to=471)
AMDSBAU_11_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7684..8628)
-----------------
DNA (945bp)
protein (315aa)
aldose 1-epimerase rbh
aldose 1-epimerase rbh
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I8K0_SULAT
Aldose 1-epimerase n=2 Tax=Sulfobacillus acidophilus RepID=G8TSZ4_SULAD (db=UNIREF evalue=3.3e-91 bit_score=340.9 identity=52.6 coverage=96.5079365079365)
AMDSBAU_11_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8625..10082)
-----------------
DNA (1458bp)
protein (486aa)
xylulokinase
xylulokinase
Xylulokinase n=2 Tax=Sulfobacillus acidophilus RepID=F8I8K1_SULAT
Xylulokinase n=2 Tax=Sulfobacillus acidophilus RepID=F8I8K1_SULAT (db=UNIREF evalue=7.3e-162 bit_score=576.2 identity=57.9 coverage=98.76543209876543)
AMDSBAU_11_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10093..11232)
-----------------
DNA (1140bp)
protein (380aa)
xylA; xylose isomerase
xylA; xylose isomerase
Xylose isomerase n=2 Tax=Sulfobacillus acidophilus RepID=F8I8K2_SULAT
Xylose isomerase n=2 Tax=Sulfobacillus acidophilus RepID=F8I8K2_SULAT (db=UNIREF evalue=1.3e-174 bit_score=618.2 identity=80.1 coverage=97.63157894736842)
AMDSBAU_11_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12137..13309
-----------------
DNA (1173bp)
protein (391aa)
MarR family transcriptional regulator (EC:2.7.1.2) rbh
MarR family transcriptional regulator (EC:2.7.1.2) rbh
Transcriptional regulator, MarR family n=2 Tax=Sulfobacillus acidophilus RepID=G8TSZ7_SULAD
Transcriptional regulator, MarR family n=2 Tax=Sulfobacillus acidophilus RepID=G8TSZ7_SULAD (db=UNIREF evalue=2.8e-156 bit_score=557.4 identity=69.6 coverage=98.9769820971867)
AMDSBAU_11_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13321..14154)
-----------------
DNA (834bp)
protein (278aa)
multi-copper enzyme maturation ABC transporter permease rbh
multi-copper enzyme maturation ABC transporter permease rbh
ABC-type transport system involved in multi-copper enzyme maturation, permease component n=2 Tax=Sulfobacillus acidophilus RepID=G8TUT5_SULAD
ABC-type transport system involved in multi-copper enzyme maturation, permease component n=2 Tax=Sulfobacillus acidophilus RepID=G8TUT5_SULAD (db=UNIREF evalue=3.4e-79 bit_score=300.8 identity=56.8 coverage=99.28057553956835)
AMDSBAU_11_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14155..15075)
-----------------
DNA (921bp)
protein (307aa)
ABC transporter
ABC transporter
ABC transporter related protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I397_SULAT
ABC transporter related protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I397_SULAT (db=UNIREF evalue=5.4e-86 bit_score=323.6 identity=57.9 coverage=97.39413680781759)
AMDSBAU_11_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15072..16115)
-----------------
DNA (1044bp)
protein (348aa)
Putative transmembrane anti-sigma factor n=2 Tax=Sulfobacillus acidophilus RepID=F8I393_SULAT (db=UNIREF evalue=4.5e-81 bit_score=307.4 identity=47.1 coverage=95.6896551724138)
hypothetical protein
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUU0_SULAD
AMDSBAU_11_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16112..16633)
-----------------
DNA (522bp)
protein (174aa)
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sulfobacillus acidophilus RepID=F8I392_SULAT (db=UNIREF evalue=4.4e-53 bit_score=213.4 identity=67.9 coverage=90.80459770114942)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=95 to=157 evalue=0.00012 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
(db=HMMPfam db_id=PF04542 from=11 to=74 evalue=1.3e-11 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
AMDSBAU_11_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16910..18238
-----------------
DNA (1329bp)
protein (443aa)
major facilitator superfamily protein rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 n=2 Tax=Sulfobacillus acidophilus RepID=F8I7H5_SULAT
Major facilitator superfamily MFS_1 n=2 Tax=Sulfobacillus acidophilus RepID=F8I7H5_SULAT (db=UNIREF evalue=1.2e-174 bit_score=618.6 identity=67.7 coverage=98.1941309255079)
AMDSBAU_11_15
Candidatus Acidianus copahuensis, Acidianus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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comp(18088..19332)
-----------------
DNA (1245bp)
protein (415aa)
hypothetical protein
hypothetical protein
UPI000038E593 related cluster n=1 Tax=unknown RepID=UPI000038E593
mannonate dehydratase related protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E593 (db=UNIREF evalue=5.0e-95 bit_score=354.0 identity=53.7 coverage=70.36144578313252)
AMDSBAU_11_16
Bacillus hemicellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(19361..20206)
-----------------
DNA (846bp)
protein (282aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paenibacillus lactis 154 RepID=G4HCT3_9BACL
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paenibacillus lactis 154 RepID=G4HCT3_9BACL (db=UNIREF evalue=6.9e-96 bit_score=356.3 identity=61.5 coverage=98.22695035460993)
uxuB; UxuB protein
uxuB; UxuB protein
AMDSBAU_11_17
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(20244..22310)
-----------------
DNA (2067bp)
protein (689aa)
alpha-glucuronidase
alpha-glucuronidase
Alpha-glucuronidase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EGR1_THECK
Alpha-glucuronidase n=1 Tax=Thermobacillus composti KWC4 RepID=G4E9V1_9BACL (db=UNIREF evalue=3.1e-235 bit_score=820.5 identity=58.3 coverage=97.53265602322206)
AMDSBAU_11_18
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(22423..23265)
-----------------
DNA (843bp)
protein (281aa)
binding-protein-dependent transport systems inner membrane component n=1 Tax=Nesterenkonia sp. F RepID=UPI000255D06F (db=UNIREF evalue=3.5e-52 bit_score=211.1 identity=38.8 coverage=93.59430604982207)
binding-protein-dependent transport systems inner membrane component
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=243 to=265)
AMDSBAU_11_19
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(23296..24225)
-----------------
DNA (930bp)
protein (310aa)
binding-protein-dependent transport systems inner membrane component n=1 Tax=Nesterenkonia sp. F RepID=UPI000255D070 (db=UNIREF evalue=1.3e-47 bit_score=196.1 identity=38.8 coverage=91.29032258064517)
putative sugar transport integral membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=278 to=300)
transmembrane_regions (db=TMHMM db_id=tmhmm from=230 to=252)
AMDSBAU_11_20
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(24285..25517)
-----------------
DNA (1233bp)
protein (411aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Nesterenkonia sp. F RepID=UPI000255D071 (db=UNIREF evalue=1.4e-52 bit_score=213.0 identity=33.2 coverage=89.29440389294405)
sugar ABC transporter substrate-binding protein
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=21 to=410 evalue=2.8e-61)
no description (db=Gene3D db_id=G3DSA:3.40.190.10 from=156 to=352 evalue=2.6e-24)
AMDSBAU_11_21
Bacillus halodurans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25625..26878)
-----------------
DNA (1254bp)
protein (418aa)
UPI0002893FFB related cluster n=1 Tax=unknown RepID=UPI0002893FFB
hypothetical protein PJC66_19766 n=1 Tax=Paenibacillus sp. JC66 RepID=UPI0002893FFB (db=UNIREF evalue=5.0e-103 bit_score=380.6 identity=47.3 coverage=95.69377990430623)
hypothetical protein
hypothetical protein
AMDSBAU_11_22
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26898..27602)
-----------------
DNA (705bp)
protein (235aa)
GntR family transcriptional regulator
Transcriptional regulator, GntR family n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HH72_9BACL (db=UNIREF evalue=7.6e-48 bit_score=196.4 identity=47.3 coverage=93.19148936170212)
no description (db=HMMSmart db_id=SM00895 from=86 to=216 evalue=1.9e-11 interpro_id=IPR011711 interpro_description=GntR, C-terminal)
(db=HMMPfam db_id=PF00392 from=16 to=76 evalue=2.3e-17 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_11_23
unknown

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27691..28023
-----------------
DNA (333bp)
protein (111aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBAU_11_24
Caldanaerobius polysaccharolyticus, Caldanaerobius, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(28096..30441)
-----------------
DNA (2346bp)
protein (782aa)
Xyl3A n=1 Tax=Caldanaerobius polysaccharolyticus RepID=I6R6X6_9THEO
Xyl3A n=1 Tax=Caldanaerobius polysaccharolyticus RepID=I6R6X6_9THEO (db=UNIREF evalue=1.3e-269 bit_score=934.9 identity=59.0 coverage=98.72122762148338)
glycoside hydrolase family 3 domain-containing protein
glycoside hydrolase family 3 domain-containing protein
AMDSBAU_11_25
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(30744..31739)
-----------------
DNA (996bp)
protein (332aa)
oligopeptide/dipeptide ABC transporter, ATPase subunit
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Cellulomonas fimi ATCC 484 RepID=F4H853_CELFA (db=UNIREF evalue=1.3e-69 bit_score=269.2 identity=47.1 coverage=97.89156626506023)
seg (db=Seg db_id=seg from=316 to=328)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=151 to=165 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBAU_11_26
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(31714..32703)
-----------------
DNA (990bp)
protein (330aa)
peptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q609_CATAD (db=UNIREF evalue=1.6e-75 bit_score=288.9 identity=45.5 coverage=94.54545454545455)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=152 to=166 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=319 evalue=1.8e-125)
AMDSBAU_11_27
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(32700..33620)
-----------------
DNA (921bp)
protein (307aa)
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M244_ACIFD (db=UNIREF evalue=3.3e-83 bit_score=314.3 identity=55.8 coverage=87.29641693811075)
transmembrane_regions (db=TMHMM db_id=tmhmm from=269 to=291)
transmembrane_regions (db=TMHMM db_id=tmhmm from=216 to=238)
AMDSBAU_11_28
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(33613..34626)
-----------------
DNA (1014bp)
protein (338aa)
binding-protein-dependent transport systems inner membrane component
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M243_ACIFD
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M243_ACIFD (db=UNIREF evalue=1.2e-115 bit_score=422.2 identity=63.0 coverage=96.15384615384616)
AMDSBAU_11_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34699..35991)
-----------------
DNA (1293bp)
protein (431aa)
family 5 extracellular solute-binding protein
Extracellular solute-binding protein family 5 n=2 Tax=Sulfobacillus acidophilus RepID=F8I7D1_SULAT (db=UNIREF evalue=7.8e-83 bit_score=313.5 identity=37.0 coverage=97.6798143851508)
seg (db=Seg db_id=seg from=284 to=295)
(db=HMMPfam db_id=PF00496 from=23 to=322 evalue=1.3e-49 interpro_id=IPR000914 interpro_description=Bacterial extracellular solute-binding protein, family 5 GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810))
Displaying 29 items

View Taxonomy