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AMDSBAU_20

Alias: SULFO_OTHER_20

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_20_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(650..1543)
DNA (894bp) protein (298aa)
ureidoglycolate lyase (EC:4.3.2.3)
Uncharacterized protein {ECO:0000313|EMBL:AEW05586.1}; EC=4.3.2.3 {ECO:0000313|EMBL:AEW05586.1};; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Ince
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=2 Tax=Sulfobacillus acidophilus RepID=F8I816_SULAT (db=UNIREF evalue=2.0e-77 bit_score=295.0 identity=53.2 coverage=97.31543624161074)
coiled-coil (db=Coil db_id=coil from=47 to=68 evalue=NA)
AMDSBAU_20_2
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1670..2227)
DNA (558bp) protein (186aa)
3-hexulose-6-phosphate isomerase {ECO:0000313|EMBL:EPX87583.1}; EC=5.3.1.27 {ECO:0000313|EMBL:EPX87583.1};; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodo
sugar isomerase
Sugar isomerase (SIS) n=1 Tax=Meiothermus silvanus DSM 9946 RepID=D7BE34_MEISD (db=UNIREF evalue=5.3e-28 bit_score=130.2 identity=41.7 coverage=93.54838709677419)
SIS domain (db=superfamily db_id=SSF53697 from=7 to=185 evalue=1.6e-20)
AMDSBAU_20_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2617..4023)
DNA (1407bp) protein (469aa)
AraB protein {ECO:0000313|EMBL:BAQ47325.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticu
carbohydrate kinase
Carbohydrate kinase n=1 Tax=Eubacterium limosum KIST612 RepID=E3GLT5_EUBLK (db=UNIREF evalue=4.5e-52 bit_score=211.5 identity=30.7 coverage=98.72068230277186)
(db=HMMPfam db_id=PF00370 from=5 to=236 evalue=1.2e-18 interpro_id=IPR018484 interpro_description=Carbohydrate kinase, FGGY, N-terminal GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
AMDSBAU_20_4
unknown

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comp(4601..4693)
DNA (93bp) protein (31aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBAU_20_5
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4983..6506)
DNA (1524bp) protein (508aa)
lipoate-protein ligase B/lipoate synthase
lipoate-protein ligase B/lipoate synthase
Octanoyltransferase {ECO:0000256|SAAS:SAAS00218471}; EC=2.3.1.- {ECO:0000256|SAAS:SAAS00277418};; EC=2.3.1.181 {ECO:0000256|SAAS:SAAS00218470};; TaxID=706587 species="Bacteria; Proteobacteria; Deltapr
Lipoate-protein ligase B/lipoate synthase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C1N8_DESTA
AMDSBAU_20_6
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(6503..7879)
DNA (1377bp) protein (459aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaeroba
Dihydrolipoyl dehydrogenase n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9RXV8_THEOJ (db=UNIREF evalue=3.5e-73 bit_score=281.6 identity=36.9 coverage=96.94989106753813)
PYRIDINE_REDOX_1 (db=PatternScan db_id=PS00076 from=43 to=53 evalue=0.0 interpro_id=IPR012999 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO=Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor (GO:0016668), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBAU_20_7
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7857..9068)
DNA (1212bp) protein (404aa)
alkylhydroperoxidase-like protein
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae
Alkylhydroperoxidase like protein, AhpD family n=2 Tax=Desulfotomaculum RepID=F6B905_DESCC (db=UNIREF evalue=1.1e-73 bit_score=283.1 identity=39.4 coverage=95.54455445544554)
LIPOYL (db=PatternScan db_id=PS00189 from=27 to=56 evalue=0.0 interpro_id=IPR003016 interpro_description=2-oxo acid dehydrogenase, lipoyl-binding site)
AMDSBAU_20_8
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9209..10249)
DNA (1041bp) protein (347aa)
2-oxoisovalerate dehydrogenase subunit beta (EC:1.2.4.4); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RBG_13_Deltaproteobacteria_53_10_curated
2-oxoisovalerate dehydrogenase subunit beta (EC:1.2.4.4)
2-oxoisovalerate dehydrogenase beta subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZM4_THERP (db=UNIREF evalue=5.8e-129 bit_score=466.5 identity=68.5 coverage=95.67723342939482)
seg (db=Seg db_id=seg from=229 to=241)
AMDSBAU_20_9
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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comp(10279..11247)
DNA (969bp) protein (323aa)
TPP-dependent acetoin dehydrogenase subunit alpha
TPP-dependent acetoin dehydrogenase subunit alpha
TPP-dependent acetoin dehydrogenase alpha-subunit n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZM3_THERP
TPP-dependent acetoin dehydrogenase alpha-subunit {ECO:0000313|EMBL:ACM05282.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomi
AMDSBAU_20_10
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(11501..12517)
DNA (1017bp) protein (339aa)
monosaccharide ABC transporter membrane protein, cut2 family
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:ADR36494.1}; Flags: Precursor;; TaxID=670487 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; O
Monosaccharide ABC transporter membrane protein, CUT2 family n=1 Tax=Oceanithermus profundus DSM 14977 RepID=E4U7P5_OCEP5 (db=UNIREF evalue=4.7e-59 bit_score=234.2 identity=39.8 coverage=88.20058997050147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBAU_20_11
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12521..13531)
DNA (1011bp) protein (337aa)
Uncharacterized protein {ECO:0000313|EMBL:KDB04324.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas s
Monosaccharide-transporting ATPase n=4 Tax=Bacillus RepID=C3B4Q9_BACMY (db=UNIREF evalue=2.2e-48 bit_score=198.7 identity=35.6 coverage=88.13056379821958)
inner-membrane translocator
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
AMDSBAU_20_12
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13564..15159)
DNA (1596bp) protein (532aa)
Ribose import ATP-binding protein rbsA 2 {ECO:0000313|EMBL:CCH78032.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CCH78032.1};; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae;
putative L-rhamnose ABC transporter, ATP-binding component
putative L-rhamnose ABC transporter, ATP-binding component
ABC-type sugar transport system, ATPase component protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IZC7_HERSS
AMDSBAU_20_13
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15376..16407)
DNA (1032bp) protein (344aa)
Uncharacterized protein {ECO:0000313|EMBL:KDB04326.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas s
ABC transporter, solute-binding, sugar transport
ABC transporter, solute-binding, sugar transport n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WTL4_ALIAD (db=UNIREF evalue=5.1e-53 bit_score=214.2 identity=37.6 coverage=99.4186046511628)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
AMDSBAU_20_14
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16555..17319)
DNA (765bp) protein (255aa)
cyclase family protein
Cyclase {ECO:0000313|EMBL:EXU91634.1}; TaxID=1395572 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus PD-1.;"
Cyclase family protein n=2 Tax=Salinispora tropica RepID=A4X3Q3_SALTO (db=UNIREF evalue=4.3e-57 bit_score=227.3 identity=43.8 coverage=97.6470588235294)
Putative cyclase (db=superfamily db_id=SSF102198 from=2 to=254 evalue=1.6e-45)
AMDSBAU_20_15
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17460..18263)
DNA (804bp) protein (268aa)
srl; DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:CAM02736.1}; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolysp
Transcriptional regulator, DeoR family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FFB1_SACEN (db=UNIREF evalue=1.2e-41 bit_score=176.0 identity=39.2 coverage=92.16417910447761)
HTH_DEOR_1 (db=PatternScan db_id=PS00894 from=6 to=40 evalue=0.0 interpro_id=IPR018356 interpro_description=Transcription regulator, HTH DeoR-type, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_20_16
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18365..19156)
DNA (792bp) protein (264aa)
yxbG; oxidoreductase yxbG rbh
yxbG; oxidoreductase yxbG rbh
Uncharacterized oxidoreductase yxbG {ECO:0000313|EMBL:AEN87137.1}; TaxID=1006007 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus megaterium WSH-002.;"
Short chain dehydrogenase n=2 Tax=Bacillus megaterium RepID=D5DN78_BACMD
AMDSBAU_20_17
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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comp(19469..20227)
DNA (759bp) protein (253aa)
hypothetical protein Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
short chain dehydrogenase family protein
2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase) n=1 Tax=Bacillus megaterium DSM 319 RepID=D5DDG4_BACMD (db=UNIREF evalue=8.7e-42 bit_score=176.4 identity=40.1 coverage=94.0711462450593)
ADH_SHORT (db=PatternScan db_id=PS00061 from=147 to=175 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
AMDSBAU_20_18
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20254..21348)
DNA (1095bp) protein (365aa)
Mandelate racemase {ECO:0000313|EMBL:ESX83967.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC
mandelate racemase/muconate lactonizing protein
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D1J0_PAESJ
AMDSBAU_20_19
unknown

Not on your lists

21537..22160
DNA (624bp) protein (208aa)
coiled-coil (db=Coil db_id=coil from=75 to=96 evalue=NA)
seg (db=Seg db_id=seg from=103 to=117)
seg (db=Seg db_id=seg from=190 to=201)
AMDSBAU_20_20

Not on your lists

comp(22152..22940)
DNA (789bp) protein (263aa)
Protein containing GntR {ECO:0000313|EMBL:EQD59905.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
GntR family transcriptional regulator
Transcriptional regulator, GntR family n=1 Tax=Thermus scotoductus SA-01 RepID=E8PQN6_THESS (db=UNIREF evalue=8.0e-22 bit_score=110.2 identity=33.5 coverage=82.12927756653993)
coiled-coil (db=Coil db_id=coil from=224 to=245 evalue=NA)
AMDSBAU_20_21
unknown

Not on your lists

23075..23689
DNA (615bp) protein (205aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=69 to=87)
seg (db=Seg db_id=seg from=7 to=18)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=29 to=200 evalue=5.3e-11 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
AMDSBAU_20_22
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24175..25347
DNA (1173bp) protein (391aa)
Putative membrane protein n=1 Tax=Clostridium ljungdahlii DSM 13528 RepID=D8GUI9_CLOLD (db=UNIREF evalue=2.9e-20 bit_score=105.5 identity=24.0 coverage=93.60613810741688)
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ADK16866.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain A
YgbK-like (db=superfamily db_id=SSF142764 from=4 to=371 evalue=2.4e-31)
AMDSBAU_20_23
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25347..26363
DNA (1017bp) protein (339aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosph
4-hydroxythreonine-4-phosphate dehydrogenase
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y706_COPPD (db=UNIREF evalue=1.2e-78 bit_score=299.3 identity=48.2 coverage=97.34513274336283)
Isocitrate/Isopropylmalate dehydrogenase-like (db=superfamily db_id=SSF53659 from=7 to=335 evalue=1.3e-96)
Displaying 23 items

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