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Alum_Rock_2019_MS4_unknown_57_51

Alum_Rock_2019_MS4_Deltaproteobacteria_57_51
In projects: Alum_Rock_2019_MS4  |  alumrock-genomes

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: Alum_Rock_2019_MS4_UNK

Properties

Avg. coverage: 50.89 Longest contig: 167.04 Kbp Bin length: 2.96 Mbp GC content: 57.17 %
Contigs count: 127 Features count: 2857 rRNAs count: 0 tRNAs count: 40

Genome completeness

near complete RP 42 / 55 MC: 2 BSCG 46 / 51 MC: 3 ASCG 10 / 38 MC: 1
Displaying items 1-50 of 127 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
AR_MS4_05142019_scaffold_25342
Class: Deltaproteobacteria (100%)
7 6233 bp 57.82 52.90 93.81
AR_MS4_05142019_scaffold_25431
Class: Deltaproteobacteria (75%)
4 3837 bp 58.27 44.21 89.44
AR_MS4_05142019_scaffold_25538
Class: Deltaproteobacteria (63.64%)
11 10594 bp 56.72 56.17 69.01
AR_MS4_05142019_scaffold_1079
Class: Deltaproteobacteria (77.14%)
35 33518 bp 55.81 56.67 83.83
AR_MS4_05142019_scaffold_1145
Class: Deltaproteobacteria (81.82%)
33 37211 bp 57.20 48.26 89.01
AR_MS4_05142019_scaffold_1166
Class: Deltaproteobacteria (73.33%)
30 31931 bp 55.75 52.16 91.82
AR_MS4_05142019_scaffold_1172
Class: Deltaproteobacteria (78.79%)
33 39465 bp 56.27 57.02 90.89
AR_MS4_05142019_scaffold_1185
Class: Deltaproteobacteria (97.22%)
36 38092 bp 56.97 52.14 90.17
AR_MS4_05142019_scaffold_1196
Class: Deltaproteobacteria (85.71%)
28 31332 bp 58.51 50.96 90.34
AR_MS4_05142019_scaffold_1227
Class: Deltaproteobacteria (84.85%)
33 33047 bp 58.16 51.27 89.64
AR_MS4_05142019_scaffold_1229
Class: Deltaproteobacteria (82.76%)
58 61302 bp 56.80 48.49 89.91
AR_MS4_05142019_scaffold_1274
Class: Deltaproteobacteria (94.59%)
37 43790 bp 58.93 52.89 91.61
AR_MS4_05142019_scaffold_1384
Class: Deltaproteobacteria (72.41%)
29 28644 bp 55.69 46.50 86.88
AR_MS4_05142019_scaffold_1551
Class: Deltaproteobacteria (75.68%)
37 35907 bp 56.50 51.45 87.37
AR_MS4_05142019_scaffold_1579
Class: Deltaproteobacteria (71.88%)
32 28019 bp 56.94 49.39 88.39
AR_MS4_05142019_scaffold_1619
Class: Deltaproteobacteria (62.3%)
61 56525 bp 56.88 49.75 87.82
AR_MS4_05142019_scaffold_1657
Class: Deltaproteobacteria (81.58%)
38 57621 bp 56.32 61.05 90.83
AR_MS4_05142019_scaffold_1736
Class: Deltaproteobacteria (78.95%)
57 63645 bp 55.50 50.40 88.28
AR_MS4_05142019_scaffold_1746
Class: Deltaproteobacteria (78.79%)
33 29351 bp 57.23 55.48 87.16
AR_MS4_05142019_scaffold_1771
Class: Deltaproteobacteria (91.3%)
23 24540 bp 57.23 57.73 90.82
AR_MS4_05142019_scaffold_1978
Class: Deltaproteobacteria (80%)
20 22742 bp 55.49 48.91 90.10
AR_MS4_05142019_scaffold_9115
Class: Deltaproteobacteria (92.86%)
14 14937 bp 56.92 58.23 90.62
AR_MS4_05142019_scaffold_6418
Class: Deltaproteobacteria (75%)
12 12530 bp 56.32 44.64 89.14
AR_MS4_05142019_scaffold_6513
Species: RBG_16_Deltaproteobacteria_58_17_curated (63.64%)
11 13356 bp 58.33 50.29 85.51
AR_MS4_05142019_scaffold_6875
Class: Deltaproteobacteria (77.78%)
18 16973 bp 56.56 53.24 91.65
AR_MS4_05142019_scaffold_6960
Class: Deltaproteobacteria (92.59%)
27 26075 bp 57.23 50.02 89.49
AR_MS4_05142019_scaffold_10070
Class: Deltaproteobacteria (50%)
12 7489 bp 56.51 46.91 94.71
AR_MS4_05142019_scaffold_10291
Class: Deltaproteobacteria (50%)
16 14138 bp 55.98 47.79 90.97
AR_MS4_05142019_scaffold_10666
Class: Deltaproteobacteria (83.33%)
6 7209 bp 57.93 54.06 88.18
AR_MS4_05142019_scaffold_17052
Class: Deltaproteobacteria (76.19%)
21 14713 bp 57.10 49.87 86.66
AR_MS4_05142019_scaffold_17214
Class: Deltaproteobacteria (71.43%)
7 8117 bp 57.60 52.46 87.96
AR_MS4_05142019_scaffold_16363
Class: Deltaproteobacteria (62.5%)
8 6117 bp 56.83 55.62 92.79
AR_MS4_05142019_scaffold_11261
Class: Deltaproteobacteria (54.55%)
11 9967 bp 58.24 48.22 85.30
AR_MS4_05142019_scaffold_13731
Class: Deltaproteobacteria (50%)
6 6015 bp 58.40 56.63 91.17
AR_MS4_05142019_scaffold_38391
Class: Deltaproteobacteria (71.43%)
7 5071 bp 56.73 40.85 91.88
AR_MS4_05142019_scaffold_38441
Class: Deltaproteobacteria (80%)
5 4656 bp 58.89 44.04 96.84
AR_MS4_05142019_scaffold_40005
Class: Deltaproteobacteria (50%)
4 2743 bp 55.45 49.16 79.40
AR_MS4_05142019_scaffold_40739
Class: Deltaproteobacteria (66.67%)
3 2706 bp 58.17 45.45 93.72
AR_MS4_05142019_scaffold_7077
Class: Deltaproteobacteria (85.71%)
14 10296 bp 56.34 50.60 96.85
AR_MS4_05142019_scaffold_7325
Class: Deltaproteobacteria (82.35%)
17 15975 bp 58.47 62.09 89.15
AR_MS4_05142019_scaffold_7530
Class: Deltaproteobacteria (66.67%)
9 9170 bp 58.95 51.00 88.50
AR_MS4_05142019_scaffold_3099
Class: Deltaproteobacteria (70.59%)
17 20937 bp 58.54 54.80 89.91
AR_MS4_05142019_scaffold_3355
Class: Deltaproteobacteria (72.41%)
29 40788 bp 55.88 49.02 90.85
AR_MS4_05142019_scaffold_3710
Class: Deltaproteobacteria (72.73%)
22 18046 bp 57.46 51.81 87.28
AR_MS4_05142019_scaffold_3850
Class: Deltaproteobacteria (50%)
26 24710 bp 56.34 51.67 89.02
AR_MS4_05142019_scaffold_43284
Class: Deltaproteobacteria (100%)
4 4236 bp 57.79 58.82 95.11
AR_MS4_05142019_scaffold_21013
Class: Deltaproteobacteria (66.67%)
3 7044 bp 57.64 71.23 98.17
AR_MS4_05142019_scaffold_21358
Class: Deltaproteobacteria (50%)
4 4363 bp 58.81 46.76 100.12
AR_MS4_05142019_scaffold_47119
Class: Deltaproteobacteria (50%)
4 2431 bp 56.48 62.94 80.95
AR_MS4_05142019_scaffold_8605
Class: Deltaproteobacteria (89.47%)
19 16655 bp 58.55 49.26 83.76
Displaying items 1-50 of 127 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.