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AMDSBA1_22

Alias: AMDSBA1_C21

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_22_1
unknown

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3..149
-----------------
DNA (147bp)
protein (49aa)
seg (db=Seg db_id=seg from=35 to=44)
AMDSBA1_22_2
Geobacillus sp. CAMR5420, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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575..919
-----------------
DNA (345bp)
protein (115aa)
urease subunit gamma
Urease subunit gamma/beta n=1 Tax=Deinococcus radiodurans R1 RepID=URE23_DEIRA (db=UNIREF evalue=5.9e-26 bit_score=122.5 identity=58.3 coverage=88.69565217391305)
urease_gam: urease, gamma subunit (db=HMMTigr db_id=TIGR00193 from=1 to=102 evalue=1.8e-49 interpro_id=IPR002026 interpro_description=Urease, gamma/gamma-beta subunit)
(db=HMMPfam db_id=PF00547 from=1 to=99 evalue=3.1e-44 interpro_id=IPR002026 interpro_description=Urease, gamma/gamma-beta subunit)
AMDSBA1_22_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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916..1287
-----------------
DNA (372bp)
protein (124aa)
ureA; Urease alpha subunit (helicobacter-like nomenclature) (EC:3.5.1.5)
Urease subunit beta 1 n=54 Tax=Brucella RepID=URE21_BRUA2 (db=UNIREF evalue=6.6e-23 bit_score=112.5 identity=56.4 coverage=79.83870967741935)
Urease, beta-subunit (db=superfamily db_id=SSF51278 from=1 to=122 evalue=4.4e-41 interpro_id=IPR002019 interpro_description=Urease, beta subunit)
urease_beta: urease, beta subunit (db=HMMTigr db_id=TIGR00192 from=1 to=102 evalue=3.1e-39 interpro_id=IPR002019 interpro_description=Urease, beta subunit)
AMDSBA1_22_4
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1284..2999
-----------------
DNA (1716bp)
protein (572aa)
ureC; urease subunit alpha (EC:3.5.1.5)
ureC; urease subunit alpha (EC:3.5.1.5)
Urease subunit alpha 1 n=15 Tax=Pseudomonas RepID=URE11_PSEU2 (db=UNIREF evalue=5.5e-173 bit_score=613.2 identity=54.6 coverage=98.77622377622379)
AMDSBA1_22_5
Geomicrobium sp. JCM 19038, Bacillales, Bacilli, Firmicutes, Bacteria

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3039..3503
-----------------
DNA (465bp)
protein (155aa)
Urease accessory protein UreE (nickel metallochaperone) (db=HMMPIR db_id=PIRSF036402 from=4 to=152 evalue=2.6e-20 interpro_id=IPR012406 interpro_description=Urease accessory protein UreE GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: protein folding (GO:0006457), Molecular Function: nickel ion binding (GO:0016151), Biological Process: enzyme active site formation (GO:0018307))
no description (db=Gene3D db_id=G3DSA:3.30.70.790 from=78 to=151 evalue=6.9e-14 interpro_id=IPR007864 interpro_description=UreE urease accessory, C-terminal GO=Biological Process: protein complex assembly (GO:0006461), Molecular Function: nickel ion binding (GO:0016151), Biological Process: urea metabolic process (GO:0019627))
Urease metallochaperone UreE, C-terminal domain (db=superfamily db_id=SSF69737 from=79 to=146 evalue=2.0e-13 interpro_id=IPR007864 interpro_description=UreE urease accessory, C-terminal GO=Biological Process: protein complex assembly (GO:0006461), Molecular Function: nickel ion binding (GO:0016151), Biological Process: urea metabolic process (GO:0019627))
(db=HMMPfam db_id=PF05194 from=79 to=146 evalue=2.7e-12 interpro_id=IPR007864 interpro_description=UreE urease accessory, C-terminal GO=Biological Process: protein complex assembly (GO:0006461), Molecular Function: nickel ion binding (GO:0016151), Biological Process: urea metabolic process (GO:0019627))
AMDSBA1_22_6
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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3500..4198
-----------------
DNA (699bp)
protein (233aa)
Urease accessory protein UreF
Urease accessory protein UreF n=1 Tax=Arthrobacter aurescens TC1 RepID=UREF_ARTAT (db=UNIREF evalue=2.8e-22 bit_score=111.3 identity=29.7 coverage=90.98712446351931)
seg (db=Seg db_id=seg from=95 to=109)
Urease accessory protein UreF (db=HMMPIR db_id=PIRSF009467 from=10 to=232 evalue=7.4e-64 interpro_id=IPR002639 interpro_description=Urease accessory protein UreF GO=Biological Process: nitrogen compound metabolic process (GO:0006807), Molecular Function: nickel ion binding (GO:0016151))
AMDSBA1_22_7
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4237..4869
-----------------
DNA (633bp)
protein (211aa)
urease accessory protein UreG
Urease accessory protein UreG 1 n=56 Tax=Brucellaceae RepID=UREG1_BRUA2 (db=UNIREF evalue=1.9e-62 bit_score=244.6 identity=60.1 coverage=92.89099526066352)
(db=HMMPfam db_id=PF02492 from=6 to=172 evalue=2.8e-37 interpro_id=IPR003495 interpro_description=Cobalamin (vitamin B12) biosynthesis CobW-like)
ureG: urease accessory protein UreG (db=HMMTigr db_id=TIGR00101 from=3 to=200 evalue=6.6e-110 interpro_id=IPR004400 interpro_description=Urease accessory protein UreG GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Molecular Function: nickel ion binding (GO:0016151))
AMDSBA1_22_8
Helicobacter heilmannii, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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4866..5759
-----------------
DNA (894bp)
protein (298aa)
Urease accessory protein UreD n=1 Tax=Natronomonas pharaonis DSM 2160 RepID=URED_NATPD (db=UNIREF evalue=8.4e-08 bit_score=63.5 identity=34.3 coverage=35.90604026845637)
(db=HMMPfam db_id=PF01774 from=40 to=261 evalue=5.8e-34 interpro_id=IPR002669 interpro_description=Urease accessory protein UreD GO=Biological Process: nitrogen compound metabolic process (GO:0006807), Molecular Function: nickel ion binding (GO:0016151))
UreD (db=HAMAP db_id=MF_01384 from=2 to=271 evalue=16.83 interpro_id=IPR002669 interpro_description=Urease accessory protein UreD GO=Biological Process: nitrogen compound metabolic process (GO:0006807), Molecular Function: nickel ion binding (GO:0016151))
Urease accessory protein UreD
AMDSBA1_22_9
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(5788..7416)
-----------------
DNA (1629bp)
protein (543aa)
5788..7416 - ( gc_cont=0.517)
hypothetical protein
Uncharacterized protein n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7BQ10_STRBB
AMDSBA1_22_10
unknown

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8148..8306
-----------------
DNA (159bp)
protein (53aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=22 to=41)
seg (db=Seg db_id=seg from=33 to=47)
AMDSBA1_22_11
unknown

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8326..8529
-----------------
DNA (204bp)
protein (68aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA1_22_12
unknown

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comp(8680..8784)
-----------------
DNA (105bp)
protein (35aa)
8680..8784 - ( gc_cont=0.495)
AMDSBA1_22_13
unknown

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comp(9347..9769)
-----------------
DNA (423bp)
protein (141aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
seg (db=Seg db_id=seg from=14 to=24)
AMDSBA1_22_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10058..10588
-----------------
DNA (531bp)
protein (177aa)
rhomboid protease
Rhomboid protease n=2 Tax=Sulfobacillus acidophilus RepID=G8TVA9_9FIRM (db=UNIREF evalue=3.9e-37 bit_score=160.2 identity=50.3 coverage=94.35028248587571)
seg (db=Seg db_id=seg from=105 to=123)
seg (db=Seg db_id=seg from=58 to=74)
AMDSBA1_22_15
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10947..11459
-----------------
DNA (513bp)
protein (171aa)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=7 to=165 evalue=2.4e-18 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
(db=HMMPfam db_id=PF00583 from=53 to=125 evalue=6.7e-13 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=7 to=131 evalue=4.2e-12 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
N-TERMINAL ACETYLTRANSFERASE (db=HMMPanther db_id=PTHR23091 from=81 to=129 evalue=0.0003)
AMDSBA1_22_16
unknown

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12164..12400
-----------------
DNA (237bp)
protein (79aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=50)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=21)
AMDSBA1_22_17
unknown

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comp(12405..13142)
-----------------
DNA (738bp)
protein (246aa)
seg (db=Seg db_id=seg from=14 to=20)
seg (db=Seg db_id=seg from=147 to=156)
seg (db=Seg db_id=seg from=228 to=242)
AMDSBA1_22_18
Thermus thermophilus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(13270..13602)
-----------------
DNA (333bp)
protein (111aa)
hypothetical protein
Uncharacterized protein n=6 Tax=Thermus RepID=H7GFM0_9DEIN (db=UNIREF evalue=4.0e-19 bit_score=99.8 identity=50.0 coverage=93.69369369369369)
(db=HMMPfam db_id=PF06153 from=5 to=109 evalue=5.5e-27 interpro_id=IPR010375 interpro_description=Protein of unknown function DUF970)
AMDSBA1_22_19
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

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comp(13833..15611)
-----------------
DNA (1779bp)
protein (593aa)
exp8; Putative ABC transporter ATP-binding protein exp8
ABC transporter ATP binding/permease protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDA8_BREBN (db=UNIREF evalue=1.7e-63 bit_score=249.6 identity=30.3 coverage=94.94097807757167)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
AMDSBA1_22_20
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

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comp(15608..17368)
-----------------
DNA (1761bp)
protein (587aa)
ABC transporter
ABC transporter
ABC transporter ATP binding/permease protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZL34_BREBN (db=UNIREF evalue=2.2e-153 bit_score=548.1 identity=46.7 coverage=98.29642248722317)
AMDSBA1_22_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18106..19986)
-----------------
DNA (1881bp)
protein (627aa)
peptidase S53 propeptide
Peptidase S53 propeptide n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8M9U1_CALMQ (db=UNIREF evalue=1.8e-47 bit_score=196.4 identity=28.9 coverage=84.688995215311)
PROTEASE S8 TRIPEPTIDYL PEPTIDASE I (CLN2) (db=HMMPanther db_id=PTHR14218 from=358 to=624 evalue=1.3e-07)
SUBTILASE_SER (db=PatternScan db_id=PS00138 from=541 to=551 evalue=0.0 interpro_id=IPR023828 interpro_description=Peptidase S8, subtilisin, Ser-active site)
AMDSBA1_22_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20128..20346)
-----------------
DNA (219bp)
protein (73aa)
seg (db=Seg db_id=seg from=36 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7G9_SULAT
AMDSBA1_22_23
Leptospirillum ferrodiazotrophum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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20527..22101
-----------------
DNA (1575bp)
protein (525aa)
hypothetical protein
Putative uncharacterized protein n=7 Tax=uncultured Desulfobacterium sp. RepID=E1YIS2_9DELT (db=UNIREF evalue=2.8e-62 bit_score=245.4 identity=38.4 coverage=64.0)
seg (db=Seg db_id=seg from=63 to=72)
(db=HMMPfam db_id=PF01609 from=357 to=523 evalue=1.7e-10 interpro_id=IPR002559 interpro_description=Transposase, IS4-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
AMDSBA1_22_24
R_Gammaproteobacteria_35_23, Gammaproteobacteria, Proteobacteria, Bacteria

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22533..22931
-----------------
DNA (399bp)
protein (133aa)
seg (db=Seg db_id=seg from=52 to=59)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=18 to=73 evalue=1.8e-11)
ALCOHOL DEHYDROGENASE, ZINC-CONTAINING (db=HMMPanther db_id=PTHR11695:SF34 from=22 to=72 evalue=2.4e-10)
ALCOHOL DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11695 from=22 to=72 evalue=2.4e-10 interpro_id=IPR002085 interpro_description=Alcohol dehydrogenase superfamily, zinc-type GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_22_25
unknown

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23231..23947
-----------------
DNA (717bp)
protein (239aa)
(db=HMMPfam db_id=PF00293 from=6 to=213 evalue=2.9e-15 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=3 to=211 evalue=7.0e-15 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
TESTOSTERONE-REGULATED PROTEIN RP2 (db=HMMPanther db_id=PTHR12318 from=1 to=228 evalue=9.0e-10)
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=4 to=57 evalue=4.0e-05 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA1_22_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23944..24774
-----------------
DNA (831bp)
protein (277aa)
beta-lactamase domain-containing protein
Beta-lactamase domain protein n=1 Tax=Truepera radiovictrix DSM 17093 RepID=D7CTV8_TRURR (db=UNIREF evalue=7.3e-30 bit_score=136.7 identity=32.9 coverage=99.27797833935018)
seg (db=Seg db_id=seg from=220 to=233)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=6 to=239 evalue=2.6e-35)
AMDSBA1_22_27
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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25331..25849
-----------------
DNA (519bp)
protein (173aa)
(2Fe-2S)-binding domain-containing protein
Carbon-monoxide dehydrogenase (Acceptor) n=2 Tax=Sulfobacillus acidophilus RepID=G8TVW8_9FIRM (db=UNIREF evalue=1.6e-51 bit_score=208.0 identity=59.8 coverage=95.95375722543352)
seg (db=Seg db_id=seg from=159 to=168)
XANTHINE DEHYDROGENASE (db=HMMPanther db_id=PTHR11908 from=6 to=152 evalue=1.7e-47)
AMDSBA1_22_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25936..28299
-----------------
DNA (2364bp)
protein (788aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFU3_9BACT (db=UNIREF evalue=2.5e-240 bit_score=837.4 identity=54.0 coverage=97.58883248730965)
AMDSBA1_22_29

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28342..29214
-----------------
DNA (873bp)
protein (291aa)
molybdopterin dehydrogenase FAD-binding protein
Carbon monoxide dehydrogenase medium chain n=1 Tax=Salinisphaera shabanensis E1L3A RepID=F7Q8R6_9GAMM (db=UNIREF evalue=2.5e-28 bit_score=131.7 identity=37.1 coverage=83.50515463917526)
seg (db=Seg db_id=seg from=249 to=259)
FAD-binding domain (db=superfamily db_id=SSF56176 from=1 to=178 evalue=6.8e-57 interpro_id=IPR016166 interpro_description=FAD-binding, type 2 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_22_30
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

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29201..30112
-----------------
DNA (912bp)
protein (304aa)
ATPase
Putative uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3JYV7_9RHOB (db=UNIREF evalue=3.0e-85 bit_score=320.9 identity=52.9 coverage=96.05263157894737)
seg (db=Seg db_id=seg from=284 to=296)
Displaying items 1-30 of 45 in total

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