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AMDSBA1_23

Alias: AMDSBA1_C22

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_23_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(465..2444)
DNA (1980bp) protein (660aa)
pleD; GAF sensor-containing diguanylate cyclase
Diguanylate cyclase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q2B5_9CLOT (db=UNIREF evalue=9.3e-07 bit_score=61.2 identity=36.9 coverage=13.939393939393941)
transmembrane_regions (db=TMHMM db_id=tmhmm from=103 to=125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
AMDSBA1_23_2
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(2549..3097)
DNA (549bp) protein (183aa)
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=8 to=178 evalue=4.2e-19 interpro_id=IPR009002 interpro_description=FMN-binding split barrel-related)
(db=HMMPfam db_id=PF01613 from=20 to=149 evalue=7.6e-15 interpro_id=IPR002563 interpro_description=Flavin reductase-like, FMN-binding GO=Molecular Function: FMN binding (GO:0010181), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: flavin reductase activity (GO:0042602), Biological Process: oxidation-reduction process (GO:0055114))
no description (db=Gene3D db_id=G3DSA:2.30.110.10 from=11 to=147 evalue=2.0e-14 interpro_id=IPR012349 interpro_description=FMN-binding split barrel GO=Molecular Function: FMN binding (GO:0010181), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
no description (db=HMMSmart db_id=SM00903 from=16 to=161 evalue=0.00026 interpro_id=IPR002563 interpro_description=Flavin reductase-like, FMN-binding GO=Molecular Function: FMN binding (GO:0010181), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: flavin reductase activity (GO:0042602), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_23_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3097..6201)
DNA (3105bp) protein (1035aa)
dnaE; DNA polymerase III subunit alpha
dnaE; DNA polymerase III subunit alpha
DNA polymerase III, alpha subunit n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M170_9FIRM (db=UNIREF evalue=1.0e-233 bit_score=815.8 identity=47.8 coverage=89.46859903381642)
AMDSBA1_23_4
unknown

Not on your lists

comp(6233..6391)
DNA (159bp) protein (53aa)
6233..6391 - ( gc_cont=0.365)
AMDSBA1_23_5
[Bacillus] selenitireducens, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6745..7971)
DNA (1227bp) protein (409aa)
metalloendopeptidase (EC:3.4.24.57)
metalloendopeptidase (EC:3.4.24.57)
HNH endonuclease n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TY38_9CHLR (db=UNIREF evalue=3.9e-32 bit_score=144.8 identity=30.8 coverage=80.1955990220049)
seg (db=Seg db_id=seg from=93 to=117)
AMDSBA1_23_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8323..9459)
DNA (1137bp) protein (379aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I3G0_SULAT (db=UNIREF evalue=9.9e-54 bit_score=216.5 identity=31.6 coverage=93.13984168865436)
DNA/RNA polymerases (db=superfamily db_id=SSF56672 from=10 to=197 evalue=4.7e-07)
Uncharacterized protein {ECO:0000313|EMBL:AEJ40768.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA1_23_7
unknown

Not on your lists

comp(9485..9640)
DNA (156bp) protein (52aa)
9485..9640 - ( gc_cont=0.455)
AMDSBA1_23_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9723..10559)
DNA (837bp) protein (279aa)
Enoyl-CoA hydratase/isomerase
Putative enoyl-CoA hydratase/isomerase yngF n=9 Tax=Bacillus RepID=YNGF_BACSU (db=UNIREF evalue=1.6e-29 bit_score=135.6 identity=34.7 coverage=92.47311827956989)
ClpP/crotonase (db=superfamily db_id=SSF52096 from=17 to=272 evalue=1.3e-76)
no description (db=Gene3D db_id=G3DSA:3.90.226.10 from=25 to=269 evalue=9.1e-63)
AMDSBA1_23_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10556..11482)
DNA (927bp) protein (309aa)
hmgL; pyruvate carboxyltransferase
Hydroxymethylglutaryl-CoA lyase yngG n=9 Tax=Bacillus RepID=HMGCL_BACSU (db=UNIREF evalue=4.7e-70 bit_score=270.4 identity=47.0 coverage=91.9093851132686)
Aldolase (db=superfamily db_id=SSF51569 from=8 to=302 evalue=4.3e-76)
ISOPROPYLMALATE SYNTHASE RELATED (db=HMMPanther db_id=PTHR10277 from=119 to=303 evalue=5.6e-66)
AMDSBA1_23_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11565..13085)
DNA (1521bp) protein (507aa)
pccB; propionyl-CoA carboxylase
pccB; propionyl-CoA carboxylase
Uncharacterized carboxylase YngE n=11 Tax=Bacillus RepID=YNGE_BACSU (db=UNIREF evalue=6.8e-183 bit_score=646.0 identity=64.8 coverage=98.81656804733728)
seg (db=Seg db_id=seg from=435 to=452)
AMDSBA1_23_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13261..13479)
DNA (219bp) protein (73aa)
oadA; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
Biotin/lipoyl attachment domain-containing protein n=6 Tax=Geobacillus RepID=B4BK26_9BACI (db=UNIREF evalue=3.6e-13 bit_score=79.3 identity=52.9 coverage=94.52054794520548)
(db=HMMPfam db_id=PF00364 from=9 to=69 evalue=1.7e-18 interpro_id=IPR000089 interpro_description=Biotin/lipoyl attachment)
Single hybrid motif (db=superfamily db_id=SSF51230 from=4 to=70 evalue=4.6e-18 interpro_id=IPR011053 interpro_description=Single hybrid motif)
AMDSBA1_23_12
unknown

Not on your lists

comp(13476..14183)
DNA (708bp) protein (236aa)
13476..14183 - ( gc_cont=0.518)
AMDSBA1_23_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14183..15469)
DNA (1287bp) protein (429aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Acyl-CoA dehydrogenase domain-containing protein n=2 Tax=Thermaerobacter RepID=E6SK20_THEM7 (db=UNIREF evalue=2.0e-119 bit_score=434.9 identity=56.8 coverage=87.17948717948718)
ACYL_COA_DH_2 (db=PatternScan db_id=PS00073 from=383 to=402 evalue=0.0 interpro_id=IPR006089 interpro_description=Acyl-CoA dehydrogenase, conserved site GO=Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995), Biological Process: oxidation-reduction process (GO:0055114))
ACYL_COA_DH_1 (db=PatternScan db_id=PS00072 from=173 to=185 evalue=0.0 interpro_id=IPR006089 interpro_description=Acyl-CoA dehydrogenase, conserved site GO=Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_23_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15487..16317
DNA (831bp) protein (277aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Sulfobacillus acidophilus RepID=G8TVB9_9FIRM (db=UNIREF evalue=3.9e-100 bit_score=370.2 identity=64.3 coverage=96.75090252707581)
AMDSBA1_23_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16324..17247
DNA (924bp) protein (308aa)
ketopantoate reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=1 Tax=Idiomarina baltica OS145 RepID=A3WNT3_9GAMM (db=UNIREF evalue=1.5e-15 bit_score=89.4 identity=29.4 coverage=90.5844155844156)
(db=HMMPfam db_id=PF08546 from=180 to=301 evalue=8.3e-34 interpro_id=IPR013752 interpro_description=Ketopantoate reductase ApbA/PanE, C-terminal GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NADP binding (GO:0050661), Biological Process: oxidation-reduction process (GO:0055114))
6-phosphogluconate dehydrogenase C-terminal domain-like (db=superfamily db_id=SSF48179 from=179 to=303 evalue=2.6e-31 interpro_id=IPR008927 interpro_description=6-phosphogluconate dehydrogenase, C-terminal-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_23_16
Serratia sp. ATCC 39006, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17648..19033
DNA (1386bp) protein (462aa)
permease for cytosine/purines uracil thiamine allantoin
Permease for cytosine/purines, uracil, thiamine, allantoin n=4 Tax=Lactobacillus reuteri RepID=C0YXI3_LACRE (db=UNIREF evalue=3.2e-54 bit_score=218.4 identity=30.2 coverage=91.34199134199135)
seg (db=Seg db_id=seg from=149 to=163)
transmembrane_regions (db=TMHMM db_id=tmhmm from=428 to=450)
AMDSBA1_23_17
unknown

Not on your lists

comp(19539..19664)
DNA (126bp) protein (42aa)
19539..19664 - ( gc_cont=0.492)
AMDSBA1_23_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20005..21684
DNA (1680bp) protein (560aa)
integral membrane sensor signal transduction histidine kinase
integral membrane sensor signal transduction histidine kinase
Two component sensor kinase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NRG0_9RHOB (db=UNIREF evalue=4.3e-154 bit_score=550.4 identity=50.5 coverage=95.35714285714286)
seg (db=Seg db_id=seg from=425 to=466)
AMDSBA1_23_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21786..22949
DNA (1164bp) protein (388aa)
Formamidase (EC:3.5.1.49)
Formamidase (EC:3.5.1.49)
Predicted protein n=3 Tax=Hypocrea RepID=G0RTX7_HYPJQ (db=UNIREF evalue=1.9e-124 bit_score=451.4 identity=57.7 coverage=94.3298969072165)
AMDSBA1_23_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23258..23998
DNA (741bp) protein (247aa)
hypothetical protein
Putative membrane protein n=2 Tax=Acidithiobacillus caldus RepID=C6NVU4_9GAMM (db=UNIREF evalue=1.7e-62 bit_score=245.0 identity=53.6 coverage=93.92712550607287)
seg (db=Seg db_id=seg from=138 to=156)
seg (db=Seg db_id=seg from=49 to=64)
AMDSBA1_23_21
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24113..25870)
DNA (1758bp) protein (586aa)
hypothetical protein
Sensory box protein/GGDEF domain protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CIW9_9BACI (db=UNIREF evalue=1.3e-39 bit_score=170.2 identity=27.7 coverage=75.25597269624573)
seg (db=Seg db_id=seg from=178 to=190)
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=162 to=325 evalue=2.6e-28 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
AMDSBA1_23_22
unknown

Not on your lists

26150..26623
DNA (474bp) protein (158aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=132 to=150)
seg (db=Seg db_id=seg from=134 to=148)
AMDSBA1_23_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26883..28514
DNA (1632bp) protein (544aa)
Exosortase EpsH-like protein rbh
Exosortase EpsH-like protein rbh
Exosortase EpsH-related protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSV9_9FIRM (db=UNIREF evalue=2.2e-139 bit_score=501.5 identity=49.1 coverage=95.40441176470588)
seg (db=Seg db_id=seg from=272 to=287)
AMDSBA1_23_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28668..30875
DNA (2208bp) protein (736aa)
family 2 glycosyl transferase
Putative uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U0W6_9RHOB (db=UNIREF evalue=3.0e-123 bit_score=448.4 identity=40.3 coverage=84.91847826086956)
seg (db=Seg db_id=seg from=380 to=392)
seg (db=Seg db_id=seg from=62 to=75)
AMDSBA1_23_25
unknown

Not on your lists

30878..31141
DNA (264bp) protein (88aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=59)
AMDSBA1_23_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31259..33388)
DNA (2130bp) protein (710aa)
cell surface receptor IPT/TIG domain-containing protein
Cell surface receptor IPT/TIG domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSW4_9FIRM (db=UNIREF evalue=1.2e-73 bit_score=283.5 identity=32.0 coverage=85.07042253521126)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=54 to=374 evalue=3.0e-16 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, superfamily)
Cellulose-binding family II {ECO:0000313|EMBL:AEJ40071.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="S
AMDSBA1_23_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33771..35453
DNA (1683bp) protein (561aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SC02_9BACL (db=UNIREF evalue=7.7e-63 bit_score=247.3 identity=29.3 coverage=95.54367201426025)
transmembrane_regions (db=TMHMM db_id=tmhmm from=337 to=357)
transmembrane_regions (db=TMHMM db_id=tmhmm from=367 to=384)
AMDSBA1_23_28
unknown

Not on your lists

35777..35992
DNA (216bp) protein (72aa)
35777..35992 + ( gc_cont=0.542)
AMDSBA1_23_29
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35994..36335
DNA (342bp) protein (114aa)
hypothetical protein
Transposase IS4 family protein n=2 Tax=Thiocapsa marina 5811 RepID=F9UAN2_9GAMM (db=UNIREF evalue=7.2e-08 bit_score=62.4 identity=34.5 coverage=92.98245614035088)
Uncharacterized protein {ECO:0000313|EMBL:KJS47268.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=N9ZM70_9CLOT
AMDSBA1_23_30
Pontibacillus yanchengensis, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36332..37189
DNA (858bp) protein (286aa)
Transposase DDE domain-containing protein n=1 Tax=Marinobacter manganoxydans MnI7-9 RepID=G6YWA2_9ALTE (db=UNIREF evalue=8.6e-18 bit_score=96.7 identity=35.0 coverage=60.13986013986013)
seg (db=Seg db_id=seg from=80 to=93)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=2 to=126 evalue=6.6e-08 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
(db=HMMPfam db_id=PF01609 from=10 to=155 evalue=2.4e-06 interpro_id=IPR002559 interpro_description=Transposase, IS4-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Displaying items 1-30 of 39 in total

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