ggKbase home page

AMDSBA1_24

Alias: AMDSBA1_C23

Search features with annotation key words

Displaying items 1-30 of 82 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_24_1
unknown

Not on your lists

1..381
DNA (381bp) protein (127aa)
1..381 + ( gc_cont=0.535)
AMDSBA1_24_2
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(211..2223)
DNA (2013bp) protein (671aa)
Cl-channel voltage-gated family protein
Cl-channel voltage-gated family protein n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RMW9_HALSL (db=UNIREF evalue=3.2e-39 bit_score=169.1 identity=27.8 coverage=58.12220566318928)
transmembrane_regions (db=TMHMM db_id=tmhmm from=267 to=289)
transmembrane_regions (db=TMHMM db_id=tmhmm from=188 to=207)
AMDSBA1_24_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2260..2979)
DNA (720bp) protein (240aa)
short-chain dehydrogenase/reductase SDR
Putative uncharacterized protein n=1 Tax=Rhodococcus rhodochrous RepID=F1CMX4_RHORH (db=UNIREF evalue=2.0e-12 bit_score=78.6 identity=28.4 coverage=98.75)
seg (db=Seg db_id=seg from=187 to=198)
ADH_SHORT (db=PatternScan db_id=PS00061 from=132 to=160 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
AMDSBA1_24_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3072..4874
DNA (1803bp) protein (601aa)
hypothetical protein
Thymidylate kinase n=1 Tax=Pyrobaculum sp. 1860 RepID=G7VH32_9CREN (db=UNIREF evalue=2.8e-58 bit_score=232.3 identity=38.6 coverage=47.42096505823628)
seg (db=Seg db_id=seg from=574 to=590)
seg (db=Seg db_id=seg from=280 to=292)
AMDSBA1_24_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5164..6555
DNA (1392bp) protein (464aa)
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 n=3 Tax=Alicyclobacillus acidocaldarius RepID=F8IDR0_ALIAT (db=UNIREF evalue=4.8e-119 bit_score=433.7 identity=48.4 coverage=98.0603448275862)
transmembrane_regions (db=TMHMM db_id=tmhmm from=180 to=198)
transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=273)
AMDSBA1_24_6
unknown

Not on your lists

comp(6573..6923)
DNA (351bp) protein (117aa)
6573..6923 - ( gc_cont=0.513)
AMDSBA1_24_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7166..7525)
DNA (360bp) protein (120aa)
iojap family protein
Iojap-related protein n=209 Tax=Streptococcus RepID=A5LAY6_STREE (db=UNIREF evalue=3.7e-15 bit_score=86.7 identity=40.7 coverage=89.16666666666667)
iojap_ybeB: iojap-like ribosome-associated (db=HMMTigr db_id=TIGR00090 from=9 to=107 evalue=6.8e-41 interpro_id=IPR004394 interpro_description=Ribosome-associated, Iojap-like)
(db=HMMPfam db_id=PF02410 from=12 to=107 evalue=4.9e-28 interpro_id=IPR004394 interpro_description=Ribosome-associated, Iojap-like)
AMDSBA1_24_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7596..8150)
DNA (555bp) protein (185aa)
metal dependent phosphohydrolase
Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXG2_9CLOT (db=UNIREF evalue=7.1e-13 bit_score=79.7 identity=29.6 coverage=90.27027027027027)
TIGR00488: putative HD superfamily hydrolas (db=HMMTigr db_id=TIGR00488 from=7 to=179 evalue=3.5e-24 interpro_id=IPR005249 interpro_description=Conserved hypothetical protein CHP00488)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=11 to=160 evalue=8.6e-09)
AMDSBA1_24_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8265..8522)
DNA (258bp) protein (86aa)
RNP-1 like RNA-binding protein
RNP-1 like RNA-binding protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0A0_9FIRM (db=UNIREF evalue=2.6e-34 bit_score=149.8 identity=84.7 coverage=97.67441860465115)
seg (db=Seg db_id=seg from=49 to=61)
RNA-BINDING PROTEIN (db=HMMPanther db_id=PTHR10432 from=4 to=84 evalue=5.0e-32)
AMDSBA1_24_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8674..9267)
DNA (594bp) protein (198aa)
nadD; nicotinic acid mononucleotide adenylyltransferase
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Chromobacterium violaceum ATCC 12472 RepID=NADD_CHRVO (db=UNIREF evalue=2.0e-21 bit_score=108.2 identity=34.1 coverage=97.47474747474747)
TIGR00482: nicotinate (nicotinamide) nuc (db=HMMTigr db_id=TIGR00482 from=1 to=193 evalue=1.9e-70 interpro_id=IPR005248 interpro_description=Probable nicotinate-nucleotide adenylyltransferase GO=Biological Process: NAD biosynthetic process (GO:0009435), Molecular Function: nucleotidyltransferase activity (GO:0016779))
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=1 to=195 evalue=1.6e-61 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
AMDSBA1_24_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9378..10643)
DNA (1266bp) protein (422aa)
GTPase ObgE
GTPase obg n=1 Tax=Singulisphaera acidiphila DSM 18658 RepID=H1N340_9PLAN (db=UNIREF evalue=6.4e-94 bit_score=350.1 identity=54.1 coverage=78.19905213270142)
seg (db=Seg db_id=seg from=31 to=42)
AMDSBA1_24_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10648..11292)
DNA (645bp) protein (215aa)
seg (db=Seg db_id=seg from=168 to=179)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
Sporulation response regulatory protein Spo0B (db=superfamily db_id=SSF55890 from=53 to=95 evalue=3.5e-10 interpro_id=IPR016120 interpro_description=Signal transduction histidine kinase, sporulation regulator SpoOB GO=Molecular Function: two-component sensor activity (GO:0000155), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
AMDSBA1_24_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11282..11560)
DNA (279bp) protein (93aa)
50S ribosomal protein L27P
50S ribosomal protein L27 n=56 Tax=Brucellaceae RepID=RL27_BRUA1 (db=UNIREF evalue=4.6e-21 bit_score=105.9 identity=57.5 coverage=92.47311827956989)
RIBOSOMAL_L27 (db=PatternScan db_id=PS00831 from=39 to=53 evalue=0.0 interpro_id=IPR018261 interpro_description=Ribosomal protein L27, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L27: ribosomal protein L27 (db=HMMTigr db_id=TIGR00062 from=6 to=89 evalue=1.4e-39 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_24_14
Veillonella sp. oral taxon 780, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11562..11906)
DNA (345bp) protein (115aa)
(db=HMMPfam db_id=PF04327 from=1 to=100 evalue=3.0e-24 interpro_id=IPR007422 interpro_description=Protein of unknown function DUF464)
Hypothetical protein TM1457 (db=superfamily db_id=SSF118010 from=1 to=108 evalue=5.1e-19)
Putative uncharacterized protein {ECO:0000313|EMBL:EGS39902.1}; TaxID=944564 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. oral
ribosomal protein
AMDSBA1_24_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11918..12238)
DNA (321bp) protein (107aa)
50S ribosomal protein L21P
50S ribosomal protein L21 n=3 Tax=canis group RepID=RL21_EHRCJ (db=UNIREF evalue=1.7e-14 bit_score=84.3 identity=41.7 coverage=91.58878504672897)
L21: ribosomal protein L21 (db=HMMTigr db_id=TIGR00061 from=2 to=103 evalue=9.9e-42 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00829 from=1 to=97 evalue=4.8e-33 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_24_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12311..14260)
DNA (1950bp) protein (650aa)
RNAse G (EC:3.1.4.-)
RNAse G (EC:3.1.4.-)
Ribonuclease n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PYM8_9CLOT (db=UNIREF evalue=3.0e-50 bit_score=205.7 identity=31.2 coverage=57.07692307692308)
seg (db=Seg db_id=seg from=186 to=201)
AMDSBA1_24_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14365..15231)
DNA (867bp) protein (289aa)
Zn-dependent protease n=4 Tax=Saccharomonospora azurea RepID=H0KBL8_9PSEU (db=UNIREF evalue=1.9e-09 bit_score=68.9 identity=32.3 coverage=55.36332179930796)
seg (db=Seg db_id=seg from=38 to=48)
seg (db=Seg db_id=seg from=15 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=168 to=190)
AMDSBA1_24_18
unknown

Not on your lists

comp(15252..15824)
DNA (573bp) protein (191aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
AMDSBA1_24_19
unknown

Not on your lists

15973..16236
DNA (264bp) protein (88aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
seg (db=Seg db_id=seg from=5 to=12)
AMDSBA1_24_20
unknown

Not on your lists

comp(16241..16411)
DNA (171bp) protein (57aa)
seg (db=Seg db_id=seg from=35 to=45)
seg (db=Seg db_id=seg from=14 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
coiled-coil (db=Coil db_id=coil from=23 to=44 evalue=NA)
AMDSBA1_24_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16968..18128)
DNA (1161bp) protein (387aa)
rod shape-determining protein RodA
rod shape-determining protein RodA
Rod shape-determining protein RodA n=2 Tax=Sulfobacillus acidophilus RepID=F8I7V1_SULAT (db=UNIREF evalue=2.0e-147 bit_score=527.7 identity=65.5 coverage=98.44961240310077)
seg (db=Seg db_id=seg from=285 to=296)
AMDSBA1_24_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18814..19080)
DNA (267bp) protein (89aa)
cell division topological specificity factor MinE
Cell division topological specificity factor 2 n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=MINE2_SYNWW (db=UNIREF evalue=1.6e-18 bit_score=97.4 identity=55.8 coverage=94.3820224719101)
coiled-coil (db=Coil db_id=coil from=39 to=60 evalue=NA)
(db=HMMPfam db_id=PF03776 from=15 to=82 evalue=3.3e-25 interpro_id=IPR005527 interpro_description=Septum formation topological specificity factor MinE GO=Biological Process: regulation of barrier septum assembly (GO:0032955), Biological Process: cell division (GO:0051301))
AMDSBA1_24_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19098..19895)
DNA (798bp) protein (266aa)
septum site-determining protein MinD
septum site-determining protein MinD
Septum site-determining protein MinD n=2 Tax=Sulfobacillus acidophilus RepID=G8U0E4_9FIRM (db=UNIREF evalue=4.0e-126 bit_score=456.4 identity=88.7 coverage=98.87218045112782)
AMDSBA1_24_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19912..20349)
DNA (438bp) protein (146aa)
minC; septum formation inhibitor MinC
Probable septum site-determining protein MinC n=10 Tax=Bacillus RepID=MINC_BACA2 (db=UNIREF evalue=4.9e-17 bit_score=93.2 identity=40.3 coverage=78.76712328767124)
Cell-division inhibitor MinC, C-terminal domain (db=superfamily db_id=SSF63848 from=30 to=141 evalue=1.9e-32 interpro_id=IPR005526 interpro_description=Septum formation inhibitor MinC, C-terminal GO=Biological Process: cell morphogenesis (GO:0000902))
no description (db=Gene3D db_id=G3DSA:2.160.20.70 from=31 to=145 evalue=2.1e-29 interpro_id=IPR016098 interpro_description=Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO=Biological Process: cell morphogenesis (GO:0000902))
AMDSBA1_24_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20714..21235)
DNA (522bp) protein (174aa)
rod shape-determining protein MreD
Rod shape-determining protein MreD n=2 Tax=Sulfobacillus acidophilus RepID=G8U0E6_9FIRM (db=UNIREF evalue=3.3e-52 bit_score=210.3 identity=60.0 coverage=95.97701149425288)
seg (db=Seg db_id=seg from=10 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=135 to=157)
AMDSBA1_24_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21235..22104)
DNA (870bp) protein (290aa)
Rod shape-determining protein MreC n=2 Tax=Sulfobacillus acidophilus RepID=G8U0E7_9FIRM (db=UNIREF evalue=2.0e-102 bit_score=377.9 identity=62.7 coverage=98.62068965517241)
rod shape-determining protein MreC
rod shape-determining protein MreC
AMDSBA1_24_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22120..23154)
DNA (1035bp) protein (345aa)
rod shape-determining protein MreB
rod shape-determining protein MreB
Rod shape-determining protein n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZBN4_NODSP (db=UNIREF evalue=4.3e-104 bit_score=383.6 identity=57.8 coverage=93.91304347826087)
AMDSBA1_24_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23187..23879)
DNA (693bp) protein (231aa)
radC; DNA repair protein RadC
UPF0758 protein Rcas_0037 n=2 Tax=Roseiflexus RepID=Y037_ROSCS (db=UNIREF evalue=2.4e-42 bit_score=177.9 identity=45.9 coverage=91.77489177489177)
seg (db=Seg db_id=seg from=6 to=19)
UPF0758 (db=PatternScan db_id=PS01302 from=169 to=174 evalue=0.0 interpro_id=IPR020891 interpro_description=Uncharacterised protein family UPF0758, conserved site)
AMDSBA1_24_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23876..24484)
DNA (609bp) protein (203aa)
Septum formation protein Maf
Putative maf protein n=2 Tax=Schistosoma mansoni RepID=G4VSQ0_SCHMA (db=UNIREF evalue=2.8e-23 bit_score=114.4 identity=39.8 coverage=87.68472906403942)
seg (db=Seg db_id=seg from=134 to=147)
ITPase-like (db=superfamily db_id=SSF52972 from=10 to=196 evalue=1.5e-55)
AMDSBA1_24_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24460..24723)
DNA (264bp) protein (88aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0F1_9FIRM (db=UNIREF evalue=9.7e-21 bit_score=104.8 identity=50.0 coverage=97.72727272727273)
seg (db=Seg db_id=seg from=65 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=82)
Displaying items 1-30 of 82 in total

View Taxonomy