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AMDSBA1_28

Alias: AMDSBA1_C27

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Displaying items 1-30 of 42 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_28_1
unknown

Not on your lists

comp(2..61)
DNA (60bp) protein (20aa)
2..61 - ( gc_cont=0.517)
AMDSBA1_28_2
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1501..2646)
DNA (1146bp) protein (382aa)
cobalamin biosynthesis protein CbiD
Putative cobalt-precorrin-6A synthase [deacetylating] n=2 Tax=Dorea formicigenerans RepID=B0G7Q8_9FIRM (db=UNIREF evalue=2.5e-44 bit_score=185.3 identity=37.7 coverage=77.22513089005236)
Cobalamin biosynthesis protein CbiD (db=HMMPIR db_id=PIRSF026782 from=20 to=381 evalue=5.6e-91 interpro_id=IPR002748 interpro_description=Cobalamin (vitamin B12) biosynthesis CbiD GO=Biological Process: cobalamin biosynthetic process (GO:0009236), Molecular Function: transferase activity (GO:0016740))
CbiD-like (db=superfamily db_id=SSF111342 from=5 to=310 evalue=2.1e-70 interpro_id=IPR002748 interpro_description=Cobalamin (vitamin B12) biosynthesis CbiD GO=Biological Process: cobalamin biosynthetic process (GO:0009236), Molecular Function: transferase activity (GO:0016740))
AMDSBA1_28_3
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2697..4238)
DNA (1542bp) protein (514aa)
precorrin-3B methylase and precorrin-6x reductase
Precorrin methylase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YM61_LYNSP (db=UNIREF evalue=1.6e-59 bit_score=236.1 identity=51.2 coverage=47.276264591439684)
seg (db=Seg db_id=seg from=251 to=268)
seg (db=Seg db_id=seg from=39 to=50)
AMDSBA1_28_4
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4280..5140)
DNA (861bp) protein (287aa)
cbiX; sirohydrochlorin cobaltochelatase (EC:4.99.1.3)
Colbalt chelase thioredoxin n=2 Tax=Halobacteriaceae RepID=I3R9I5_HALME (db=UNIREF evalue=2.6e-30 bit_score=138.3 identity=30.4 coverage=97.5609756097561)
seg (db=Seg db_id=seg from=273 to=283)
Chelatase (db=superfamily db_id=SSF53800 from=5 to=251 evalue=3.0e-55)
AMDSBA1_28_5
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5228..6355)
DNA (1128bp) protein (376aa)
cobalamin biosynthesis protein CbiG
Cobalamin (Vitamin B12) biosynthesis CbiG protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LKW6_THEM4 (db=UNIREF evalue=4.6e-27 bit_score=127.9 identity=26.3 coverage=82.4468085106383)
(db=HMMPfam db_id=PF01890 from=240 to=359 evalue=1.7e-32 interpro_id=IPR002750 interpro_description=Cobalamin (vitamin B12) biosynthesis CbiG, core GO=Biological Process: cobalamin biosynthetic process (GO:0009236))
(db=HMMPfam db_id=PF11760 from=56 to=138 evalue=1.2e-25 interpro_id=IPR021744 interpro_description=Cobalamin synthesis G N-terminal)
AMDSBA1_28_6
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6355..7158)
DNA (804bp) protein (268aa)
precorrin-4 methylase
Siroheme synthase n=1 Tax=Nitrosomonas sp. Is79A3 RepID=F8GJL3_NITSI (db=UNIREF evalue=6.0e-21 bit_score=107.1 identity=29.2 coverage=86.94029850746269)
SUMT_1 (db=PatternScan db_id=PS00839 from=12 to=26 evalue=0.0 interpro_id=IPR003043 interpro_description=Uroporphiryn-III C-methyltransferase, conserved site GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779), Molecular Function: methyltransferase activity (GO:0008168), Molecular Function: precorrin-2 dehydrogenase activity (GO:0043115), Biological Process: oxidation-reduction process (GO:0055114))
SUMT_2 (db=PatternScan db_id=PS00840 from=82 to=115 evalue=0.0 interpro_id=IPR003043 interpro_description=Uroporphiryn-III C-methyltransferase, conserved site GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779), Molecular Function: methyltransferase activity (GO:0008168), Molecular Function: precorrin-2 dehydrogenase activity (GO:0043115), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_28_7
Anoxybacillus sp. KU2-6(11), Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7205..7927)
DNA (723bp) protein (241aa)
cobalt-precorrin-2 C(20)-methyltransferase
Precorrin-2 C(20)-methyltransferase n=13 Tax=Clostridium RepID=A5I0D9_CLOBH (db=UNIREF evalue=1.4e-16 bit_score=92.4 identity=28.9 coverage=92.5311203319502)
cobI_cbiL: precorrin-2 C20-methyltransferas (db=HMMTigr db_id=TIGR01467 from=6 to=236 evalue=2.5e-77 interpro_id=IPR006364 interpro_description=Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core GO=Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757), Biological Process: cobalamin biosynthetic process (GO:0009236))
Precorrin-2 C20-methyltransferase (db=HMMPIR db_id=PIRSF036427 from=4 to=240 evalue=5.6e-70 interpro_id=IPR012382 interpro_description=Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase GO=Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757), Biological Process: cobalamin biosynthetic process (GO:0009236))
AMDSBA1_28_8
RBG_13_Chloroflexi_48_17_curated, Chloroflexi, Bacteria

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comp(7931..9154)
DNA (1224bp) protein (408aa)
precorrin-6Y C5,15-methyltransferase subunit CbiE (EC:2.1.1.132)
Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z8F4_9BACT (db=UNIREF evalue=4.5e-12 bit_score=78.2 identity=27.0 coverage=44.36274509803921)
Precorrin-6Y C5,15-methyltransferase (decarboxylating) CobL (db=HMMPIR db_id=PIRSF036428 from=4 to=404 evalue=6.4e-94 interpro_id=IPR006365 interpro_description=Cobalamin (vitamin B12) biosynthesis CobL, precorrin-6Y C5,15-methyltransferase GO=Biological Process: cobalamin biosynthetic process (GO:0009236), Molecular Function: precorrin-6Y C5,15-methyltransferase (decarboxylating) activity (GO:0046025))
CbiE: precorrin-6y C5,15-methyltransferase ( (db=HMMTigr db_id=TIGR02467 from=9 to=205 evalue=3.8e-52 interpro_id=IPR012818 interpro_description=Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core GO=Molecular Function: protein methyltransferase activity (GO:0008276), Biological Process: cobalamin biosynthetic process (GO:0009236))
AMDSBA1_28_9
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(9148..9777)
DNA (630bp) protein (210aa)
cobH; precorrin-8X methylmutase or isomerase
Putative uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NSE0_9FIRM (db=UNIREF evalue=5.7e-27 bit_score=126.7 identity=37.4 coverage=98.57142857142858)
(db=HMMPfam db_id=PF02570 from=8 to=202 evalue=3.7e-63 interpro_id=IPR003722 interpro_description=Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core GO=Biological Process: cobalamin biosynthetic process (GO:0009236), Molecular Function: precorrin-8X methylmutase activity (GO:0016993))
Precorrin-8X methylmutase CbiC/CobH (db=superfamily db_id=SSF63965 from=3 to=205 evalue=1.0e-61 interpro_id=IPR003722 interpro_description=Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core GO=Biological Process: cobalamin biosynthetic process (GO:0009236), Molecular Function: precorrin-8X methylmutase activity (GO:0016993))
AMDSBA1_28_10
Streptomyces toyocaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9774..11762)
DNA (1989bp) protein (663aa)
putative magnesium chelatase
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1CYA4_9FIRM (db=UNIREF evalue=1.7e-72 bit_score=279.6 identity=45.9 coverage=47.20965309200603)
seg (db=Seg db_id=seg from=240 to=254)
seg (db=Seg db_id=seg from=142 to=153)
AMDSBA1_28_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11755..15495)
DNA (3741bp) protein (1247aa)
cobaltochelatase subunit CobN
Cobaltochelatase n=1 Tax=Methanococcus voltae A3 RepID=D7DT78_METV3 (db=UNIREF evalue=1.2e-103 bit_score=384.0 identity=32.3 coverage=48.67682437850842)
cobalto_cobN: cobaltochelatase, CobN sub (db=HMMTigr db_id=TIGR02257 from=1 to=1236 evalue=0.0 interpro_id=IPR011953 interpro_description=Cobaltochelatase, CobN subunit)
AMDSBA1_28_12
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15590..16903)
DNA (1314bp) protein (438aa)
cobA; uroporphyrin-III C-methyltransferase
Uroporphyrinogen-III methylase n=1 Tax=Cenarchaeum symbiosum A RepID=A0RXB1_CENSY (db=UNIREF evalue=1.0e-41 bit_score=176.8 identity=38.8 coverage=53.88127853881278)
seg (db=Seg db_id=seg from=26 to=37)
SUMT_2 (db=PatternScan db_id=PS00840 from=87 to=120 evalue=0.0 interpro_id=IPR003043 interpro_description=Uroporphiryn-III C-methyltransferase, conserved site GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779), Molecular Function: methyltransferase activity (GO:0008168), Molecular Function: precorrin-2 dehydrogenase activity (GO:0043115), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_28_13
CG_CP01_01, CG_CP01, Bacteria

Not on your lists

comp(16925..17680)
DNA (756bp) protein (252aa)
Siroheme synthase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVF9_9GAMM (db=UNIREF evalue=9.9e-10 bit_score=69.7 identity=29.3 coverage=65.07936507936508)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=36 to=139 evalue=2.8e-23 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
cysG_Nterm: siroheme synthase, N-terminal (db=HMMTigr db_id=TIGR01470 from=39 to=245 evalue=3.2e-20 interpro_id=IPR006367 interpro_description=Sirohaem synthase, N-terminal GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779), Molecular Function: precorrin-2 dehydrogenase activity (GO:0043115), Biological Process: oxidation-reduction process (GO:0055114))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=36 to=148 evalue=5.3e-19)
AMDSBA1_28_14
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18000..18368)
DNA (369bp) protein (123aa)
CrcB-like protein
Protein CrcB homolog 2 n=1 Tax=Methanosalsum zhilinae DSM 4017 RepID=F7XQR7_METZD (db=UNIREF evalue=3.0e-12 bit_score=77.0 identity=43.0 coverage=76.42276422764228)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBA1_28_15
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(18423..18779)
DNA (357bp) protein (119aa)
crcB; crcB protein
Protein CrcB homolog 1 n=2 Tax=Thermobifida fusca YX RepID=CRCB1_THEFY (db=UNIREF evalue=3.6e-10 bit_score=70.1 identity=35.4 coverage=93.27731092436974)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
AMDSBA1_28_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19067..19738
DNA (672bp) protein (224aa)
fucA; class II aldolase/adducin family protein
seg (db=Seg db_id=seg from=177 to=191)
AraD-like aldolase/epimerase (db=superfamily db_id=SSF53639 from=4 to=216 evalue=7.8e-39 interpro_id=IPR001303 interpro_description=Class II aldolase/adducin N-terminal GO=Molecular Function: metal ion binding (GO:0046872))
no description (db=Gene3D db_id=G3DSA:3.40.225.10 from=4 to=210 evalue=2.5e-32 interpro_id=IPR001303 interpro_description=Class II aldolase/adducin N-terminal GO=Molecular Function: metal ion binding (GO:0046872))
AMDSBA1_28_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19787..20167
DNA (381bp) protein (127aa)
Carboxymuconolactone decarboxylase
Carboxymuconolactone decarboxylase n=2 Tax=Sulfobacillus acidophilus RepID=G8TS25_9FIRM (db=UNIREF evalue=1.8e-36 bit_score=157.5 identity=65.3 coverage=94.48818897637796)
AhpD-like (db=superfamily db_id=SSF69118 from=6 to=120 evalue=9.6e-16)
(db=HMMPfam db_id=PF02627 from=46 to=115 evalue=1.2e-12 interpro_id=IPR003779 interpro_description=Carboxymuconolactone decarboxylase GO=Molecular Function: peroxiredoxin activity (GO:0051920), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_28_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20228..20626
DNA (399bp) protein (133aa)
PadR family transcriptional regulator
Transcriptional regulator, PadR family n=2 Tax=Sulfobacillus acidophilus RepID=G8TS23_9FIRM (db=UNIREF evalue=2.0e-25 bit_score=120.9 identity=46.0 coverage=84.21052631578947)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=12 to=110 evalue=3.7e-17)
(db=HMMPfam db_id=PF03551 from=11 to=91 evalue=2.4e-16 interpro_id=IPR005149 interpro_description=Transcription regulator PadR N-terminal)
AMDSBA1_28_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20565..21530)
DNA (966bp) protein (322aa)
hypothetical protein (db=KEGG evalue=1.1e-16 bit_score=92.8 identity=25.4 coverage=97.20496894409938)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXA7_9FIRM (db=UNIREF evalue=1.4e-16 bit_score=92.8 identity=25.4 coverage=97.20496894409938)
seg (db=Seg db_id=seg from=281 to=297)
AMDSBA1_28_20
unknown

Not on your lists

comp(21527..22063)
DNA (537bp) protein (179aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
seg (db=Seg db_id=seg from=127 to=140)
AMDSBA1_28_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22133..23818)
DNA (1686bp) protein (562aa)
Type IV secretory pathway VirB4 protein-like protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXA9_9FIRM (db=UNIREF evalue=1.4e-136 bit_score=492.3 identity=44.8 coverage=98.04270462633453)
type IV secretory pathway VirB4 protein-like protein
type IV secretory pathway VirB4 protein-like protein
AMDSBA1_28_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23809..24399)
DNA (591bp) protein (197aa)
Type IV secretory pathway VirB4 protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IB82_SULAT (db=UNIREF evalue=2.0e-58 bit_score=231.1 identity=56.6 coverage=97.96954314720813)
hypothetical protein
Type IV secretory pathway VirB4 protein {ECO:0000313|EMBL:AEJ39186.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.
AMDSBA1_28_23
unknown

Not on your lists

comp(24980..25405)
DNA (426bp) protein (142aa)
24980..25405 - ( gc_cont=0.554)
AMDSBA1_28_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25719..26522)
DNA (804bp) protein (268aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXB2_9FIRM (db=UNIREF evalue=3.0e-28 bit_score=131.3 identity=30.0 coverage=92.91044776119402)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=83)
seg (db=Seg db_id=seg from=202 to=210)
AMDSBA1_28_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26509..26742)
DNA (234bp) protein (78aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IB79_SULAT (db=UNIREF evalue=4.0e-18 bit_score=95.9 identity=58.4 coverage=97.43589743589743)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
AMDSBA1_28_26
unknown

Not on your lists

comp(26715..26879)
DNA (165bp) protein (55aa)
26715..26879 - ( gc_cont=0.527)
AMDSBA1_28_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27050..27592)
DNA (543bp) protein (181aa)
thioesterase superfamily protein
Thioesterase superfamily protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXB4_9FIRM (db=UNIREF evalue=1.7e-56 bit_score=224.6 identity=73.5 coverage=82.87292817679558)
seg (db=Seg db_id=seg from=151 to=162)
seg (db=Seg db_id=seg from=64 to=77)
AMDSBA1_28_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27618..29045
DNA (1428bp) protein (476aa)
Amino acid permease-associated region n=2 Tax=Sulfobacillus acidophilus RepID=G8TXB5_9FIRM (db=UNIREF evalue=5.2e-161 bit_score=573.2 identity=62.3 coverage=97.26890756302521)
amino acid permease
amino acid permease
transmembrane_regions (db=TMHMM db_id=tmhmm from=289 to=311)
AMDSBA1_28_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29444..30802)
DNA (1359bp) protein (453aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
Uncharacterized RNA methyltransferase BMEI1496 n=55 Tax=Brucellaceae RepID=Y1496_BRUME (db=UNIREF evalue=6.1e-18 bit_score=97.8 identity=34.9 coverage=34.87858719646799)
TRMA_1 (db=PatternScan db_id=PS01230 from=379 to=410 evalue=0.0 interpro_id=IPR010280 interpro_description=(Uracil-5)-methyltransferase GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
RNA M5U METHYLTRANSFERASE (db=HMMPanther db_id=PTHR11061:SF2 from=11 to=449 evalue=1.1e-111)
AMDSBA1_28_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31296..32765)
DNA (1470bp) protein (490aa)
aspartyl/glutamyl-tRNA amidotransferase subunit B
aspartyl/glutamyl-tRNA amidotransferase subunit B
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 2 n=3 Tax=Clostridium acetobutylicum RepID=GATB2_CLOAB (db=UNIREF evalue=3.9e-119 bit_score=434.1 identity=46.5 coverage=96.53061224489797)
Displaying items 1-30 of 42 in total

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