ggKbase home page

AMDSBA1_38

Alias: AMDSBA1_C37

Search features with annotation key words

Displaying items 1-30 of 38 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_38_1
unknown

Not on your lists

567..683
DNA (117bp) protein (39aa)
567..683 + ( gc_cont=0.453)
AMDSBA1_38_2
Leptospira interrogans, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

685..1590
DNA (906bp) protein (302aa)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=4 to=276 evalue=6.0e-52)
(db=HMMPfam db_id=PF05368 from=9 to=247 evalue=1.8e-39 interpro_id=IPR008030 interpro_description=NmrA-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=2 to=223 evalue=6.1e-35 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
UNCHARACTERIZED (db=HMMPanther db_id=PTHR14194:SF5 from=41 to=230 evalue=2.3e-27)
AMDSBA1_38_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1964..3571
DNA (1608bp) protein (536aa)
malate synthase (EC:2.3.3.9) rbh
malate synthase (EC:2.3.3.9) rbh
Malate synthase (Fragment) n=1 Tax=Costus megalobractea RepID=Q9AU87_9LILI (db=UNIREF evalue=8.0e-33 bit_score=147.5 identity=50.4 coverage=24.62686567164179)
coiled-coil (db=Coil db_id=coil from=32 to=53 evalue=NA)
AMDSBA1_38_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3568..4857
DNA (1290bp) protein (430aa)
isocitrate lyase (EC:4.1.3.1) rbh
isocitrate lyase (EC:4.1.3.1) rbh
Isocitrate lyase n=1 Tax=Bacillus halodurans C-125 RepID=ACEA_BACHD (db=UNIREF evalue=1.5e-170 bit_score=604.7 identity=71.3 coverage=97.44186046511628)
AMDSBA1_38_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4879..5061
DNA (183bp) protein (61aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I3T0_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ38348.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA1_38_6
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5529..6977
DNA (1449bp) protein (483aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain 2 n=9 Tax=Bacteria RepID=RBL1B_NITWN (db=UNIREF evalue=5.1e-212 bit_score=742.7 identity=75.3 coverage=97.51552795031056)
seg (db=Seg db_id=seg from=47 to=66)
AMDSBA1_38_7
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6997..7425
DNA (429bp) protein (143aa)
Ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit n=3 Tax=Sulfobacillus acidophilus RepID=A1Z6C2_9FIRM (db=UNIREF evalue=2.3e-56 bit_score=223.8 identity=68.6 coverage=97.2027972027972)
no description (db=Gene3D db_id=G3DSA:3.30.190.10 from=3 to=140 evalue=7.1e-58 interpro_id=IPR000894 interpro_description=Ribulose bisphosphate carboxylase small chain, domain)
RuBisCO, small subunit (db=superfamily db_id=SSF55239 from=3 to=140 evalue=3.1e-51 interpro_id=IPR000894 interpro_description=Ribulose bisphosphate carboxylase small chain, domain)
AMDSBA1_38_8
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(7469..8392)
DNA (924bp) protein (308aa)
seg (db=Seg db_id=seg from=288 to=300)
(db=HMMPfam db_id=PF03466 from=96 to=303 evalue=8.3e-53 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=91 to=304 evalue=2.9e-48)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=10 to=121 evalue=2.9e-26)
AMDSBA1_38_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8393..8854)
DNA (462bp) protein (154aa)
AsnC family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family n=2 Tax=Sulfobacillus acidophilus RepID=G8TXJ7_9FIRM (db=UNIREF evalue=2.7e-26 bit_score=124.0 identity=46.1 coverage=97.40259740259741)
HTH_RRF2_1 (db=PatternScan db_id=PS01332 from=50 to=68 evalue=0.0 interpro_id=IPR000944 interpro_description=Transcription regulator Rrf2-like)
rrf2_super: rrf2 family protein (putative (db=HMMTigr db_id=TIGR00738 from=3 to=128 evalue=3.4e-31 interpro_id=IPR000944 interpro_description=Transcription regulator Rrf2-like)
AMDSBA1_38_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8847..9785)
DNA (939bp) protein (313aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase n=2 Tax=Caenorhabditis briggsae RepID=A8WRN7_CAEBR (db=UNIREF evalue=9.3e-82 bit_score=309.3 identity=51.3 coverage=98.08306709265176)
seg (db=Seg db_id=seg from=168 to=187)
seg (db=Seg db_id=seg from=264 to=274)
AMDSBA1_38_11
unknown

Not on your lists

9914..10084
DNA (171bp) protein (57aa)
coiled-coil (db=Coil db_id=coil from=5 to=26 evalue=NA)
AMDSBA1_38_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10068..10817)
DNA (750bp) protein (250aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase n=2 Tax=Acaryochloris RepID=DAPB_ACAM1 (db=UNIREF evalue=2.9e-38 bit_score=164.5 identity=35.5 coverage=97.6)
coiled-coil (db=Coil db_id=coil from=133 to=154 evalue=NA)
DAPB (db=PatternScan db_id=PS01298 from=148 to=165 evalue=0.0 interpro_id=IPR022664 interpro_description=Dihydrodipicolinate reductase, conserved site GO=Molecular Function: dihydrodipicolinate reductase activity (GO:0008839), Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_38_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10826..11989)
DNA (1164bp) protein (388aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Butyryl-CoA dehydrogenase n=17 Tax=Streptomyces RepID=G0Q8G3_STRGR (db=UNIREF evalue=2.8e-64 bit_score=251.5 identity=38.6 coverage=95.87628865979381)
seg (db=Seg db_id=seg from=76 to=85)
ACYL_COA_DH_2 (db=PatternScan db_id=PS00073 from=337 to=356 evalue=0.0 interpro_id=IPR006089 interpro_description=Acyl-CoA dehydrogenase, conserved site GO=Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_38_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11995..12954)
DNA (960bp) protein (320aa)
argK; lysine arginine ornithine transport system kinase
LAO/AO transport system ATPase n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C912_9CREN (db=UNIREF evalue=1.9e-50 bit_score=205.3 identity=40.5 coverage=85.0)
lao: LAO/AO transport system ATPase (db=HMMTigr db_id=TIGR00750 from=13 to=306 evalue=6.6e-99 interpro_id=IPR005129 interpro_description=ArgK protein)
(db=HMMPfam db_id=PF03308 from=18 to=276 evalue=1.3e-92 interpro_id=IPR005129 interpro_description=ArgK protein)
AMDSBA1_38_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12954..13343)
DNA (390bp) protein (130aa)
methylmalonyl-CoA mutase domain protein
Methylmalonyl-CoA mutase, C-terminal domain n=4 Tax=Thermococcus RepID=H3ZN35_THELI (db=UNIREF evalue=1.5e-38 bit_score=164.5 identity=60.9 coverage=95.38461538461539)
METHYLMALONYL-COA MUTASE (db=HMMPanther db_id=PTHR23408 from=2 to=122 evalue=4.9e-53)
Cobalamin (vitamin B12)-binding domain (db=superfamily db_id=SSF52242 from=2 to=125 evalue=1.5e-47 interpro_id=IPR006158 interpro_description=Cobalamin (vitamin B12)-binding GO=Molecular Function: cobalamin binding (GO:0031419), Molecular Function: metal ion binding (GO:0046872))
AMDSBA1_38_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13495..14172)
DNA (678bp) protein (226aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXQ9_9FIRM (db=UNIREF evalue=1.1e-55 bit_score=222.2 identity=51.6 coverage=96.90265486725663)
seg (db=Seg db_id=seg from=165 to=181)
seg (db=Seg db_id=seg from=99 to=110)
AMDSBA1_38_17
unknown

Not on your lists

14477..14719
DNA (243bp) protein (81aa)
14477..14719 + ( gc_cont=0.519)
AMDSBA1_38_18
unknown

Not on your lists

comp(15341..15571)
DNA (231bp) protein (77aa)
15341..15571 - ( gc_cont=0.528)
AMDSBA1_38_19
unknown

Not on your lists

comp(15568..15708)
DNA (141bp) protein (47aa)
15568..15708 - ( gc_cont=0.525)
AMDSBA1_38_20
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15818..16411)
DNA (594bp) protein (198aa)
GCN5-related N-acetyltransferase
Ribosomal-protein-serine acetyltransferase n=1 Tax=Bacillus sp. SG-1 RepID=A6CMW2_9BACI (db=UNIREF evalue=3.3e-40 bit_score=170.6 identity=44.8 coverage=94.94949494949495)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=6 to=185 evalue=5.6e-41 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=7 to=185 evalue=8.4e-34 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
AMDSBA1_38_21
unknown

Not on your lists

comp(18003..18161)
DNA (159bp) protein (53aa)
18003..18161 - ( gc_cont=0.497)
AMDSBA1_38_22
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18282..19439)
DNA (1158bp) protein (386aa)
IS605 OrfB family transposase
Transposase, IS605 OrfB family n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1Z397_9EURY (db=UNIREF evalue=6.7e-98 bit_score=363.2 identity=47.4 coverage=93.78238341968913)
seg (db=Seg db_id=seg from=33 to=40)
AMDSBA1_38_23
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

comp(19615..20055)
DNA (441bp) protein (147aa)
cyanate lyase (EC:4.2.1.104)
Cyanate lyase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IXA6_9BACT (db=UNIREF evalue=6.4e-33 bit_score=146.0 identity=53.9 coverage=94.5578231292517)
Cyanate hydratase (db=HMMPIR db_id=PIRSF001263 from=1 to=146 evalue=1.6e-72 interpro_id=IPR008076 interpro_description=Cyanate hydratase GO=Molecular Function: cyanate hydratase activity (GO:0008824), Biological Process: cyanate metabolic process (GO:0009439))
cynS: cyanate hydratase (db=HMMTigr db_id=TIGR00673 from=1 to=146 evalue=7.1e-70 interpro_id=IPR008076 interpro_description=Cyanate hydratase GO=Molecular Function: cyanate hydratase activity (GO:0008824), Biological Process: cyanate metabolic process (GO:0009439))
AMDSBA1_38_24
unknown

Not on your lists

comp(20299..20553)
DNA (255bp) protein (85aa)
20299..20553 - ( gc_cont=0.486)
AMDSBA1_38_25
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

21089..21367
DNA (279bp) protein (93aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanobrevibacter ruminantium M1 RepID=D3E108_METRM (db=UNIREF evalue=2.5e-11 bit_score=73.6 identity=43.9 coverage=83.87096774193549)
Zinc finger domain-containing protein {ECO:0000313|EMBL:AKB85297.1}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="
hypothetical protein PelgB_14708 n=1 Tax=Paenibacillus elgii B69 RepID=UPI000248C340
AMDSBA1_38_26
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

21810..23810
DNA (2001bp) protein (667aa)
hypothetical protein
Inner membrane protein yccS n=402 Tax=Enterobacteriaceae RepID=YCCS_ECOLI (db=UNIREF evalue=7.1e-23 bit_score=114.8 identity=23.1 coverage=91.45427286356822)
seg (db=Seg db_id=seg from=566 to=578)
seg (db=Seg db_id=seg from=429 to=442)
AMDSBA1_38_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24450..25070)
DNA (621bp) protein (207aa)
putative phosphoribosyltransferase
Phosphoribosyltransferase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N656_9ARCH (db=UNIREF evalue=2.8e-34 bit_score=151.0 identity=42.0 coverage=94.68599033816425)
seg (db=Seg db_id=seg from=113 to=125)
seg (db=Seg db_id=seg from=144 to=163)
AMDSBA1_38_28
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26639..27265)
DNA (627bp) protein (209aa)
putative N-acetyltransferase
Acetyltransferase GNAT family n=1 Tax=Butyrivibrio proteoclasticus B316 RepID=E0S0J8_BUTPB (db=UNIREF evalue=4.1e-09 bit_score=67.4 identity=25.4 coverage=87.5598086124402)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=206 evalue=6.5e-14 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
(db=HMMPfam db_id=PF00583 from=80 to=154 evalue=4.2e-08 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
AMDSBA1_38_29
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27685..28077
DNA (393bp) protein (131aa)
integrase family protein
Integrase/recombinase xerD homolog n=3 Tax=Selenomonas ruminantium RepID=XERD_SELRU (db=UNIREF evalue=7.5e-09 bit_score=65.9 identity=37.1 coverage=66.41221374045801)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=13 to=89 evalue=4.0e-16 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=15 to=89 evalue=5.1e-15 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBA1_38_30
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28016..28186
DNA (171bp) protein (57aa)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=9 to=55 evalue=4.2e-06 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
Integrase {ECO:0000313|EMBL:KEO81260.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
Cointegrate resolution protein S n=1 Tax=Desmospora sp. 8437 RepID=F5SBQ8_9BACL
integrase family protein
Displaying items 1-30 of 38 in total

View Taxonomy