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AMDSBA1_44

Alias: AMDSBA1_C43

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_44_1
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

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3..1484
-----------------
DNA (1482bp)
protein (494aa)
beta-lactamase domain-containing protein
Metallo-beta-lactamase superfamily hydrolase n=6 Tax=Lactobacillus RepID=C2HLJ4_LACAI (db=UNIREF evalue=3.4e-30 bit_score=138.7 identity=26.8 coverage=85.02024291497976)
seg (db=Seg db_id=seg from=4 to=10)
seg (db=Seg db_id=seg from=435 to=446)
AMDSBA1_44_2
unknown

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comp(1553..1762)
-----------------
DNA (210bp)
protein (70aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=65)
seg (db=Seg db_id=seg from=32 to=46)
AMDSBA1_44_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1850..3175)
-----------------
DNA (1326bp)
protein (442aa)
NRAMP family metal ion transporter
NRAMP family metal ion transporter
Metal ion transporter, NRAMP family n=2 Tax=Sulfobacillus acidophilus RepID=G8TTA4_9FIRM (db=UNIREF evalue=6.5e-174 bit_score=615.9 identity=70.0 coverage=97.73755656108597)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
AMDSBA1_44_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3428..3892
-----------------
DNA (465bp)
protein (155aa)
ctsR; transcriptional repressor
Firmicute transcriptional repressor of class III stress genes n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTJ7_9FIRM (db=UNIREF evalue=1.1e-14 bit_score=85.5 identity=36.1 coverage=95.48387096774194)
seg (db=Seg db_id=seg from=60 to=67)
(db=HMMPfam db_id=PF05848 from=1 to=148 evalue=1.9e-48 interpro_id=IPR008463 interpro_description=Firmicute transcriptional repressor of class III stress genes)
AMDSBA1_44_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3895..4470
-----------------
DNA (576bp)
protein (192aa)
UvrB/UvrC protein
UvrB/UvrC protein n=1 Tax=Mahella australiensis 50-1 BON RepID=F3ZYQ7_MAHA5 (db=UNIREF evalue=9.8e-34 bit_score=149.1 identity=39.7 coverage=84.89583333333334)
coiled-coil (db=Coil db_id=coil from=139 to=179 evalue=NA)
(db=HMMPfam db_id=PF02151 from=144 to=177 evalue=3.4e-11 interpro_id=IPR001943 interpro_description=UvrB/UvrC protein GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: nuclease activity (GO:0004518), Biological Process: nucleotide-excision repair (GO:0006289))
AMDSBA1_44_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4457..5503
-----------------
DNA (1047bp)
protein (349aa)
ATP:guanido phosphotransferase
ATP:guanido phosphotransferase
Probable arginine kinase F46H5.3 n=6 Tax=Caenorhabditis RepID=KARG1_CAEEL (db=UNIREF evalue=4.6e-13 bit_score=81.3 identity=28.7 coverage=42.693409742120345)
PHOSPHAGEN_KINASE (db=PatternScan db_id=PS00112 from=160 to=166 evalue=0.0 interpro_id=IPR022415 interpro_description=ATP:guanido phosphotransferase active site GO=Molecular Function: kinase activity (GO:0016301), Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
AMDSBA1_44_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5571..8024
-----------------
DNA (2454bp)
protein (818aa)
clpC; class III stress response-related ATPase
clpC; class III stress response-related ATPase
Chaperone protein ClpB 1 n=8 Tax=Streptomyces RepID=CLPB1_STRAW (db=UNIREF evalue=8.8e-108 bit_score=397.1 identity=41.3 coverage=70.17114914425427)
AMDSBA1_44_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8136..8699
-----------------
DNA (564bp)
protein (188aa)
sms; DNA repair protein RadA
DNA repair protein RadA n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8I531_SULAT (db=UNIREF evalue=3.0e-59 bit_score=233.8 identity=63.1 coverage=98.40425531914893)
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=134 to=158 evalue=3.9e-36 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=172 to=187 evalue=3.9e-36 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
AMDSBA1_44_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8796..9458
-----------------
DNA (663bp)
protein (221aa)
hypothetical protein (db=KEGG evalue=2.9e-13 bit_score=80.9 identity=30.4 coverage=97.28506787330316)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWW5_9FIRM (db=UNIREF evalue=3.8e-13 bit_score=80.9 identity=30.4 coverage=97.28506787330316)
AMDSBA1_44_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9530..10168
-----------------
DNA (639bp)
protein (213aa)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=47 to=205 evalue=1.8e-33 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=2 to=28 evalue=2.4e-23 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=75 to=98 evalue=2.4e-23 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
sms; DNA repair protein RadA
AMDSBA1_44_11
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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10173..11180
-----------------
DNA (1008bp)
protein (336aa)
DNA integrity scanning protein DisA
DNA integrity scanning protein DisA n=1 Tax=Acidothermus cellulolyticus 11B RepID=DISA_ACIC1 (db=UNIREF evalue=1.4e-46 bit_score=192.6 identity=36.4 coverage=97.91666666666666)
(db=HMMPfam db_id=PF02457 from=18 to=133 evalue=6.8e-30 interpro_id=IPR003390 interpro_description=DNA integrity scanning protein, DisA, N-terminal)
YojJ-like (db=superfamily db_id=SSF143597 from=14 to=139 evalue=5.6e-27)
AMDSBA1_44_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11403..12503
-----------------
DNA (1101bp)
protein (367aa)
PilT protein domain-containing protein
PilT protein domain-containing protein
Uncharacterized PIN and TRAM-domain containing protein YacL n=21 Tax=Bacillus RepID=YACL_BACSU (db=UNIREF evalue=3.0e-92 bit_score=344.4 identity=53.1 coverage=96.45776566757493)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
AMDSBA1_44_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12603..13298
-----------------
DNA (696bp)
protein (232aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=planctomycete KSU-1 RepID=I3IRC2_9PLAN (db=UNIREF evalue=8.5e-24 bit_score=116.3 identity=34.8 coverage=95.25862068965517)
ISPD (db=PatternScan db_id=PS01295 from=103 to=110 evalue=0.0 interpro_id=IPR018294 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: isoprenoid biosynthetic process (GO:0008299))
ispD: 2-C-methyl-D-erythritol 4-phosphate cy (db=HMMTigr db_id=TIGR00453 from=4 to=227 evalue=5.3e-72 interpro_id=IPR001228 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol synthase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: isoprenoid biosynthetic process (GO:0008299))
AMDSBA1_44_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13295..13774
-----------------
DNA (480bp)
protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PHD5_9BACT (db=UNIREF evalue=9.7e-27 bit_score=125.6 identity=40.3 coverage=95.625)
ispF: 2C-methyl-D-erythritol 2,4-cyclodiphos (db=HMMTigr db_id=TIGR00151 from=4 to=158 evalue=3.2e-58 interpro_id=IPR003526 interpro_description=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO=Molecular Function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity (GO:0008685), Biological Process: terpenoid biosynthetic process (GO:0016114))
IpsF-like (db=superfamily db_id=SSF69765 from=3 to=157 evalue=4.1e-55 interpro_id=IPR023423 interpro_description=IpsF domain)
AMDSBA1_44_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13757..14434)
-----------------
DNA (678bp)
protein (226aa)
amiA; N-acetylmuramoyl-L-alanine amidase
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=38 to=222 evalue=2.4e-43)
(db=HMMPfam db_id=PF01520 from=41 to=218 evalue=2.6e-43 interpro_id=IPR002508 interpro_description=Cell wall hydrolase/autolysin, catalytic GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
AMDSBA1_44_16
unknown

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comp(14764..15936)
-----------------
DNA (1173bp)
protein (391aa)
seg (db=Seg db_id=seg from=8 to=22)
seg (db=Seg db_id=seg from=28 to=41)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
AMDSBA1_44_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16329..17726
-----------------
DNA (1398bp)
protein (466aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=SYC_AZOPC (db=UNIREF evalue=6.9e-73 bit_score=280.4 identity=34.3 coverage=98.068669527897)
seg (db=Seg db_id=seg from=419 to=433)
AMDSBA1_44_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17683..18531
-----------------
DNA (849bp)
protein (283aa)
TrmH family RNA methyltransferase
RNA methyltransferase, TrmH family n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z380_EUBE2 (db=UNIREF evalue=2.0e-22 bit_score=112.1 identity=32.7 coverage=71.37809187279152)
seg (db=Seg db_id=seg from=147 to=162)
rRNA_methyl_3: RNA methyltransferase, T (db=HMMTigr db_id=TIGR00186 from=37 to=279 evalue=1.0e-64 interpro_id=IPR004441 interpro_description=RNA methyltransferase TrmH family GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
AMDSBA1_44_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18718..19392
-----------------
DNA (675bp)
protein (225aa)
RNA polymerase sigma-30 subunit SigH
RNA polymerase sigma-H factor n=29 Tax=Bacillus RepID=RPSH_BACLI (db=UNIREF evalue=3.5e-83 bit_score=313.5 identity=76.2 coverage=91.11111111111111)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=176 to=203 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA1_44_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19461..21587)
-----------------
DNA (2127bp)
protein (709aa)
transglutaminase
Putative uncharacterized protein PH0326 n=1 Tax=Pyrococcus horikoshii OT3 RepID=O58064_PYRHO (db=UNIREF evalue=6.9e-24 bit_score=118.2 identity=31.1 coverage=41.889985895627646)
transmembrane_regions (db=TMHMM db_id=tmhmm from=155 to=172)
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
AMDSBA1_44_21
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(21612..22730)
-----------------
DNA (1119bp)
protein (373aa)
Uncharacterized protein n=1 Tax=Haloferax mediterranei ATCC 33500 RepID=I3R669_HALME (db=UNIREF evalue=6.8e-07 bit_score=60.8 identity=23.5 coverage=62.19839142091153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
seg (db=Seg db_id=seg from=109 to=120)
AMDSBA1_44_22
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(22727..23722)
-----------------
DNA (996bp)
protein (332aa)
moxR; ATPase
MoxR protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A852_9GAMM (db=UNIREF evalue=4.3e-69 bit_score=267.3 identity=44.6 coverage=88.25301204819277)
seg (db=Seg db_id=seg from=62 to=73)
Predicted AAA-type ATPase enzymatic complex assembly chaperone, MoxR type (db=HMMPIR db_id=PIRSF002849 from=15 to=325 evalue=2.1e-167 interpro_id=IPR016366 interpro_description=ATPase chaperone, AAA-type, MoxR, predicted)
AMDSBA1_44_23
unknown

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comp(24524..25312)
-----------------
DNA (789bp)
protein (263aa)
24524..25312 - ( gc_cont=0.569)
AMDSBA1_44_24
unknown

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25481..25726
-----------------
DNA (246bp)
protein (82aa)
25481..25726 + ( gc_cont=0.585)
AMDSBA1_44_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25880..28087
-----------------
DNA (2208bp)
protein (736aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Desulfovibrio fructosovorans JJ RepID=E1JXY3_DESFR (db=UNIREF evalue=1.8e-22 bit_score=113.6 identity=26.0 coverage=58.69565217391305)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TU21_SULAD
Uncharacterized protein {ECO:0000313|EMBL:AEW04612.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA1_44_26
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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28882..29115
-----------------
DNA (234bp)
protein (78aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Planktothrix phage PaV-LD RepID=G9BWD4_9VIRU (db=UNIREF evalue=1.1e-07 bit_score=61.2 identity=42.6 coverage=83.33333333333334)
(db=HMMPfam db_id=PF07927 from=6 to=51 evalue=1.3e-06 interpro_id=IPR012933 interpro_description=Uncharacterised protein family UPF0395 GO=Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
YcfA/nrd intein domain (db=superfamily db_id=SSF54786 from=1 to=60 evalue=3.9e-06 interpro_id=IPR015146 interpro_description=Ribonucleotide reductase, stirrup GO=Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
AMDSBA1_44_27
Leptospirillum ferriphilum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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29102..29368
-----------------
DNA (267bp)
protein (89aa)
TTHA1013-like (db=superfamily db_id=SSF143100 from=7 to=77 evalue=2.5e-16)
(db=HMMPfam db_id=PF03681 from=8 to=55 evalue=1.8e-15 interpro_id=IPR005357 interpro_description=Uncharacterised domain UPF0150)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIA31109.1}; TaxID=1441628 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferriphilum YSK.;"
AMDSBA1_44_28
unknown

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29639..29833
-----------------
DNA (195bp)
protein (65aa)
29639..29833 + ( gc_cont=0.559)
Displaying 28 items

View Taxonomy