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AMDSBA1_47

Alias: AMDSBA1_C46

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Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_47_1
unknown

Not on your lists

comp(1..60)
DNA (60bp) protein (20aa)
1..60 - ( gc_cont=0.517)
AMDSBA1_47_2
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(303..1085)
DNA (783bp) protein (261aa)
two-component response regulator
seg (db=Seg db_id=seg from=187 to=198)
seg (db=Seg db_id=seg from=2 to=13)
HTH_ARAC_FAMILY_1 (db=PatternScan db_id=PS00041 from=200 to=242 evalue=0.0 interpro_id=IPR018062 interpro_description=Helix-turn-helix, AraC type, subdomain 2 GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA1_47_3
Geobacillus sp. Y4.1MC1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1103..2623)
DNA (1521bp) protein (507aa)
AMP-dependent synthetase and ligase n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=E3IHX6_GEOS0 (db=UNIREF evalue=3.5e-139 bit_score=500.7 identity=49.5 coverage=99.0138067061144)
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase
AMP_BINDING (db=PatternScan db_id=PS00455 from=161 to=172 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
AMDSBA1_47_4
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3685..4059
DNA (375bp) protein (125aa)
nitrogen fixation protein NifX
Dinitrogenase iron-molybdenum cofactor n=1 Tax=Vibrio sp. EJY3 RepID=H2IKR5_9VIBR (db=UNIREF evalue=9.3e-09 bit_score=65.5 identity=34.0 coverage=78.4)
no description (db=Gene3D db_id=G3DSA:3.30.420.130 from=15 to=107 evalue=1.7e-12 interpro_id=IPR003731 interpro_description=Dinitrogenase iron-molybdenum cofactor biosynthesis)
Nitrogenase accessory factor-like (db=superfamily db_id=SSF53146 from=12 to=107 evalue=3.1e-12 interpro_id=IPR003731 interpro_description=Dinitrogenase iron-molybdenum cofactor biosynthesis)
AMDSBA1_47_5
unknown

Not on your lists

comp(4909..5355)
DNA (447bp) protein (149aa)
4909..5355 - ( gc_cont=0.526)
AMDSBA1_47_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5425..6000
DNA (576bp) protein (192aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSU2_9FIRM (db=UNIREF evalue=1.2e-84 bit_score=318.2 identity=73.8 coverage=98.95833333333334)
transmembrane_regions (db=TMHMM db_id=tmhmm from=153 to=175)
AMDSBA1_47_7
unknown

Not on your lists

6970..7260
DNA (291bp) protein (97aa)
seg (db=Seg db_id=seg from=6 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
AMDSBA1_47_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7644..8102
DNA (459bp) protein (153aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG7_9FIRM (db=UNIREF evalue=2.3e-46 bit_score=190.7 identity=63.1 coverage=96.73202614379085)
transmembrane_regions (db=TMHMM db_id=tmhmm from=115 to=137)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
AMDSBA1_47_9
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8265..9332)
DNA (1068bp) protein (356aa)
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WRJ3_COMTE (db=UNIREF evalue=5.5e-38 bit_score=164.1 identity=33.0 coverage=93.82022471910112)
seg (db=Seg db_id=seg from=248 to=260)
ELECTRON TRANSPORT OXIDOREDUCTASE (db=HMMPanther db_id=PTHR10909 from=203 to=306 evalue=1.9e-36)
AMDSBA1_47_10
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9329..10465)
DNA (1137bp) protein (379aa)
acyl-CoA dehydrogenase domain-containing protein rbh
acyl-CoA dehydrogenase domain-containing protein rbh
Acyl-CoA dehydrogenase, middle domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W8K9_9CAUL (db=UNIREF evalue=3.3e-89 bit_score=334.3 identity=50.1 coverage=88.65435356200527)
AMDSBA1_47_11
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10527..11333)
DNA (807bp) protein (269aa)
enoyl-CoA hydratase/isomerase
Probable enoyl-CoA hydratase echA12 n=2 Tax=Mycobacterium leprae RepID=ECH12_MYCLE (db=UNIREF evalue=4.6e-29 bit_score=134.0 identity=33.5 coverage=89.21933085501858)
ENOYL_COA_HYDRATASE (db=PatternScan db_id=PS00166 from=109 to=129 evalue=0.0 interpro_id=IPR018376 interpro_description=Enoyl-CoA hydratase/isomerase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ClpP/crotonase (db=superfamily db_id=SSF52096 from=9 to=265 evalue=1.5e-84)
AMDSBA1_47_12
Thermovirga lienii, Thermovirga, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(11679..12728)
DNA (1050bp) protein (350aa)
CoA-binding protein
CoA binding domain protein 5 n=1 Tax=Achromobacter xylosoxidans A8 RepID=E3HMN2_ACHXA (db=UNIREF evalue=8.6e-36 bit_score=156.8 identity=31.2 coverage=97.71428571428571)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=129 evalue=3.2e-29)
Succinyl-CoA synthetase domains (db=superfamily db_id=SSF52210 from=128 to=296 evalue=6.2e-25 interpro_id=IPR016102 interpro_description=Succinyl-CoA synthetase-like)
AMDSBA1_47_13
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12771..13586)
DNA (816bp) protein (272aa)
IclR family transcriptional regulator
Transcriptional regulator, IclR family n=1 Tax=Burkholderia sp. H160 RepID=B5WBE9_9BURK (db=UNIREF evalue=1.1e-09 bit_score=69.7 identity=24.4 coverage=94.85294117647058)
GAF domain-like (db=superfamily db_id=SSF55781 from=78 to=261 evalue=1.2e-47)
no description (db=Gene3D db_id=G3DSA:3.30.450.40 from=84 to=258 evalue=6.4e-45)
AMDSBA1_47_14
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13737..14921)
DNA (1185bp) protein (395aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Rhodococcus pyridinivorans AK37 RepID=H0JQZ3_9NOCA (db=UNIREF evalue=1.5e-116 bit_score=425.2 identity=55.0 coverage=94.68354430379748)
CoA-transferase family III (CaiB/BaiF) (db=superfamily db_id=SSF89796 from=1 to=394 evalue=5.4e-146 interpro_id=IPR023606 interpro_description=CoA-transferase family III domain)
AMDSBA1_47_15
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15042..16205)
DNA (1164bp) protein (388aa)
hypothetical protein
hypothetical protein
Acyl-CoA dehydrogenase n=1 Tax=Streptomyces sp. e14 RepID=D6KDD6_9ACTO (db=UNIREF evalue=7.8e-139 bit_score=499.2 identity=61.2 coverage=98.4536082474227)
seg (db=Seg db_id=seg from=316 to=337)
AMDSBA1_47_16
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16411..17724)
DNA (1314bp) protein (438aa)
major facilitator family transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=283 to=305)
transmembrane_regions (db=TMHMM db_id=tmhmm from=251 to=273)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
AMDSBA1_47_17
unknown

Not on your lists

18265..18516
DNA (252bp) protein (84aa)
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
AMDSBA1_47_18
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(19221..19778)
DNA (558bp) protein (186aa)
Octanoyltransferase
Octanoyltransferase n=2 Tax=Bdellovibrio bacteriovorus HD100 RepID=LIPB_BDEBA (db=UNIREF evalue=2.4e-16 bit_score=91.3 identity=29.7 coverage=94.08602150537635)
LIPB (db=PatternScan db_id=PS01313 from=76 to=91 evalue=0.0 interpro_id=IPR020605 interpro_description=Octanoyltransferase, conserved site GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: lipoate biosynthetic process (GO:0009107), Molecular Function: octanoyltransferase activity (GO:0016415))
Class II aaRS and biotin synthetases (db=superfamily db_id=SSF55681 from=1 to=176 evalue=2.3e-46)
AMDSBA1_47_19
Spiribacter sp. UAH-SP71, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19775..19981)
DNA (207bp) protein (69aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
seg (db=Seg db_id=seg from=28 to=45)
DIHYDROLIPOAMIDE DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR22912:SF20 from=1 to=68 evalue=1.4e-21 interpro_id=IPR006258 interpro_description=Dihydrolipoamide dehydrogenase GO=Molecular Function: dihydrolipoyl dehydrogenase activity (GO:0004148), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
DISULFIDE OXIDOREDUCTASE (db=HMMPanther db_id=PTHR22912 from=1 to=68 evalue=1.4e-21)
AMDSBA1_47_20
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20241..20933
DNA (693bp) protein (231aa)
respiratory nitrate reductase subunit gamma (EC:1.7.99.4) rbh
Respiratory nitrate reductase, gamma subunit n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8ICB5_SULAT (db=UNIREF evalue=1.1e-31 bit_score=142.5 identity=71.7 coverage=39.39393939393939)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=75)
seg (db=Seg db_id=seg from=97 to=119)
AMDSBA1_47_21
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22255..22737
DNA (483bp) protein (161aa)
cupin
Putative uncharacterized protein n=1 Tax=Prevotella maculosa OT 289 RepID=H1HK21_9BACT (db=UNIREF evalue=5.2e-20 bit_score=103.2 identity=35.2 coverage=86.95652173913044)
seg (db=Seg db_id=seg from=89 to=98)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=44 to=134 evalue=3.9e-14 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
AMDSBA1_47_22
Methanosarcina sp. 2.H.T.1A.8, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22994..23269)
DNA (276bp) protein (92aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes WB4 RepID=E4T6Q6_PALPW (db=UNIREF evalue=2.5e-11 bit_score=73.6 identity=45.8 coverage=88.04347826086956)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=C9YIK0_CLODR
Glyoxalase {ECO:0000313|EMBL:KKG23212.1}; TaxID=1483598 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 2.H.T.1A.8
AMDSBA1_47_23
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23787..23987)
DNA (201bp) protein (67aa)
Zn-dependent hydrolase of the beta-lactamase fold-like protein
Zn-dependent hydrolase of the beta-lactamase fold-like protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AE76_THECD (db=UNIREF evalue=9.1e-11 bit_score=71.2 identity=61.1 coverage=77.61194029850746)
seg (db=Seg db_id=seg from=45 to=53)
Zn-dependent hydrolase of the beta-lactamase fold-like protein {ECO:0000313|EMBL:ACY99502.1}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.
AMDSBA1_47_24
unknown

Not on your lists

comp(23989..24477)
DNA (489bp) protein (163aa)
23989..24477 - ( gc_cont=0.524)
AMDSBA1_47_25
Acidilobus saccharovorans, Acidilobus, Acidilobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(24467..25765)
DNA (1299bp) protein (433aa)
iron-containing alcohol dehydrogenase (EC:1.1.1.1)
iron-containing alcohol dehydrogenase (EC:1.1.1.1)
Iron-containing alcohol dehydrogenase n=2 Tax=Sulfolobus islandicus RepID=C3N452_SULIA (db=UNIREF evalue=2.1e-140 bit_score=504.6 identity=57.4 coverage=97.6905311778291)
AMDSBA1_47_26
Thermoplasma volcanium, Thermoplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(25811..26626)
DNA (816bp) protein (272aa)
Zn-dependent hydrolase (AttM-related) rbh
Zn-dependent hydrolase (AttM-related) rbh
Putative uncharacterized protein TVG1350001 n=1 Tax=Thermoplasma volcanium GSS1 RepID=Q978V7_THEVO (db=UNIREF evalue=1.1e-102 bit_score=378.6 identity=64.8 coverage=97.79411764705883)
AMDSBA1_47_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27062..27415
DNA (354bp) protein (118aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=26 to=100 evalue=5.7e-07)
(db=HMMPfam db_id=PF09339 from=28 to=72 evalue=7.0e-07 interpro_id=IPR005471 interpro_description=Transcription regulator IclR, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
IclR family transcriptional regulator
AMDSBA1_47_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27399..27914
DNA (516bp) protein (172aa)
IclR family transcriptional regulator
GAF domain-like (db=superfamily db_id=SSF55781 from=1 to=159 evalue=1.8e-28)
no description (db=Gene3D db_id=G3DSA:3.30.450.40 from=1 to=162 evalue=1.1e-25)
(db=HMMPfam db_id=PF01614 from=47 to=154 evalue=2.0e-17 interpro_id=IPR014757 interpro_description=Transcription regulator IclR, C-terminal)
AMDSBA1_47_29
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

28016..28447
DNA (432bp) protein (144aa)
coiled-coil (db=Coil db_id=coil from=55 to=76 evalue=NA)
Uncharacterized protein n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0JY73_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCG92192.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" s
hypothetical protein
AMDSBA1_47_30
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

28466..30061
DNA (1596bp) protein (532aa)
betA; glucose-methanol-choline (GMC) oxidoreductase:NAD binding subunit rbh
betA; glucose-methanol-choline (GMC) oxidoreductase:NAD binding subunit rbh
Putative 2-keto-gluconate dehydrogenase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIL6_9ALTE (db=UNIREF evalue=5.1e-149 bit_score=533.5 identity=51.2 coverage=96.05263157894737)
Displaying items 1-30 of 55 in total

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