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AMDSBA1_58

Alias: AMDSBA1_C57

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_58_1
unknown

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comp(1..120)
-----------------
DNA (120bp)
protein (40aa)
COLD SHOCK DOMAIN CONTAINING PROTEINS (db=HMMPanther db_id=PTHR11544 from=20 to=40 evalue=2.1e-08)
(db=HMMPfam db_id=PF00313 from=20 to=40 evalue=4.4e-07 interpro_id=IPR002059 interpro_description=Cold-shock protein, DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=12 to=40 evalue=2.3e-06 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
AMDSBA1_58_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(445..906)
-----------------
DNA (462bp)
protein (154aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=37 to=109 evalue=1.5e-07)
(db=HMMPfam db_id=PF00535 from=40 to=103 evalue=7.5e-07 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
hypothetical protein
AMDSBA1_58_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(976..2175)
-----------------
DNA (1200bp)
protein (400aa)
metK; S-adenosylmethionine synthetase
metK; S-adenosylmethionine synthetase
S-adenosylmethionine synthase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=METK_AKKM8 (db=UNIREF evalue=4.5e-105 bit_score=387.1 identity=51.7 coverage=95.75)
AMDSBA1_58_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2574..2831)
-----------------
DNA (258bp)
protein (86aa)
sporulation transcriptional regulator SpoIIID
Stage III sporulation protein D n=35 Tax=Bacillus RepID=SP3D_BACSU (db=UNIREF evalue=3.1e-19 bit_score=99.8 identity=60.8 coverage=90.69767441860465)
HTH_DEOR_1 (db=PatternScan db_id=PS00894 from=8 to=41 evalue=0.0 interpro_id=IPR018356 interpro_description=Transcription regulator, HTH DeoR-type, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
spore_III_D: sporulation transcriptional (db=HMMTigr db_id=TIGR02844 from=2 to=81 evalue=3.9e-44 interpro_id=IPR014208 interpro_description=Sporulation stage III, transcriptional regulator SpoIIID)
AMDSBA1_58_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2931..3512)
-----------------
DNA (582bp)
protein (194aa)
spoIIQ; peptidase M23
M23 peptidase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WEC7_9CAUL (db=UNIREF evalue=2.4e-11 bit_score=74.7 identity=35.8 coverage=77.31958762886599)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=10 to=22)
AMDSBA1_58_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3601..4317)
-----------------
DNA (717bp)
protein (239aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ16_9FIRM (db=UNIREF evalue=5.3e-45 bit_score=186.8 identity=42.4 coverage=94.14225941422593)
seg (db=Seg db_id=seg from=54 to=64)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA1_58_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4474..4896)
-----------------
DNA (423bp)
protein (141aa)
atpC; ATP synthase F1 subunit epsilon
ATP synthase epsilon chain, chloroplastic n=1 Tax=Cyanidioschyzon merolae RepID=ATPE_CYAME (db=UNIREF evalue=8.0e-09 bit_score=65.9 identity=29.8 coverage=86.52482269503547)
seg (db=Seg db_id=seg from=93 to=102)
coiled-coil (db=Coil db_id=coil from=115 to=136 evalue=NA)
AMDSBA1_58_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4912..6327)
-----------------
DNA (1416bp)
protein (472aa)
ATP synthase F1 subcomplex subunit beta
ATP synthase F1 subcomplex subunit beta
ATP synthase subunit beta, chloroplastic n=5 Tax=Viridiplantae RepID=ATPB_CHAVU (db=UNIREF evalue=2.5e-179 bit_score=634.0 identity=66.4 coverage=99.57627118644068)
AMDSBA1_58_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6339..7196)
-----------------
DNA (858bp)
protein (286aa)
ATP synthase F1 subcomplex subunit gamma
ATP synthase gamma chain n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ20_9FIRM (db=UNIREF evalue=1.5e-86 bit_score=325.1 identity=58.8 coverage=99.3006993006993)
ATP synthase (F1-ATPase), gamma subunit (db=superfamily db_id=SSF52943 from=7 to=285 evalue=1.4e-86 interpro_id=IPR023633 interpro_description=ATPase, F1 complex, gamma subunit domain)
AMDSBA1_58_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7197..8705)
-----------------
DNA (1509bp)
protein (503aa)
atpA; ATP synthase F1 subunit alpha
atpA; ATP synthase F1 subunit alpha
ATP synthase subunit alpha 1 n=4 Tax=Legionella pneumophila RepID=ATPA1_LEGPA (db=UNIREF evalue=1.4e-111 bit_score=409.1 identity=47.6 coverage=87.47514910536779)
AMDSBA1_58_11
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8695..9258)
-----------------
DNA (564bp)
protein (188aa)
atpH; ATP synthase delta chain (EC:3.6.3.14)
(db=HMMPfam db_id=PF00213 from=8 to=176 evalue=2.2e-48 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
ATP_synt_delta: ATP synthase F1, delta (db=HMMTigr db_id=TIGR01145 from=6 to=176 evalue=6.4e-40 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
ATP SYNTHASE DELTA CHAIN (db=HMMPanther db_id=PTHR11910 from=10 to=182 evalue=1.7e-37 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
AMDSBA1_58_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9255..9749)
-----------------
DNA (495bp)
protein (165aa)
ATP synthase subunit b 1 n=1 Tax=Rhodospirillum centenum SW PF1_RHOCS">RepID=ATPF1_RHOCS (db=UNIREF evalue=5.2e-07 bit_score=60.1 identity=28.0 coverage=85.45454545454545)
seg (db=Seg db_id=seg from=81 to=92)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=37 to=76 evalue=NA)
AMDSBA1_58_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9825..10052)
-----------------
DNA (228bp)
protein (76aa)
seg (db=Seg db_id=seg from=6 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
ATPASE_C (db=PatternScan db_id=PS00605 from=38 to=59 evalue=0.0 interpro_id=IPR020537 interpro_description=ATPase, F0 complex, subunit C, DCCD-binding site)
AMDSBA1_58_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10133..10825)
-----------------
DNA (693bp)
protein (231aa)
ATP synthase F0 subcomplex subunit A
ATP synthase subunit a 2 n=1 Tax=Pelobacter propionicus DSM 2379 RepID=ATP62_PELPD (db=UNIREF evalue=1.8e-13 bit_score=82.0 identity=29.2 coverage=87.44588744588745)
transmembrane_regions (db=TMHMM db_id=tmhmm from=130 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
AMDSBA1_58_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10822..11301)
-----------------
DNA (480bp)
protein (160aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ26_9FIRM (db=UNIREF evalue=3.1e-33 bit_score=147.1 identity=52.5 coverage=85.0)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=130 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=125)
AMDSBA1_58_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11739..12365)
-----------------
DNA (627bp)
protein (209aa)
upp; uracil phosphoribosyltransferase
Uracil phosphoribosyltransferase n=10 Tax=Rhizobium/Agrobacterium group RepID=UPP_AGRRK (db=UNIREF evalue=4.9e-47 bit_score=193.4 identity=47.3 coverage=97.1291866028708)
seg (db=Seg db_id=seg from=67 to=76)
upp: uracil phosphoribosyltransferase (db=HMMTigr db_id=TIGR01091 from=1 to=206 evalue=2.9e-94 interpro_id=IPR005765 interpro_description=Uracil phosphoribosyl transferase GO=Molecular Function: uracil phosphoribosyltransferase activity (GO:0004845), Biological Process: uracil salvage (GO:0006223))
AMDSBA1_58_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12459..12905)
-----------------
DNA (447bp)
protein (149aa)
RpiB/LacA/LacB family sugar-phosphate isomerase (EC:5.3.1.6)
Ribose/galactose isomerase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TVM8_9PROT (db=UNIREF evalue=2.3e-30 bit_score=137.5 identity=47.1 coverage=93.28859060402685)
seg (db=Seg db_id=seg from=135 to=146)
Sugar-phosphate isomerase, RpiB/LacA/LacB types (db=HMMPIR db_id=PIRSF005384 from=1 to=147 evalue=1.5e-76 interpro_id=IPR003500 interpro_description=Ribose/galactose isomerase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA1_58_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12910..13389)
-----------------
DNA (480bp)
protein (160aa)
protein tyrosine phosphatase
Phosphotyrosine protein phosphatases I (db=superfamily db_id=SSF52788 from=1 to=146 evalue=3.1e-32 interpro_id=IPR023485 interpro_description=Phosphotyrosine protein phosphatase I superfamily)
no description (db=Gene3D db_id=G3DSA:3.40.50.270 from=1 to=148 evalue=1.2e-27)
(db=HMMPfam db_id=PF01451 from=7 to=141 evalue=6.3e-27 interpro_id=IPR023485 interpro_description=Phosphotyrosine protein phosphatase I superfamily)
AMDSBA1_58_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13389..14414)
-----------------
DNA (1026bp)
protein (342aa)
translation factor
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Pyrobaculum sp. 1860 RepID=G7VFG7_9CREN (db=UNIREF evalue=7.6e-53 bit_score=213.4 identity=40.3 coverage=91.81286549707602)
Translation factor, SUA5 type (db=HMMPIR db_id=PIRSF004930 from=1 to=333 evalue=4.4e-142 interpro_id=IPR010923 interpro_description=Translation factor, SUA5 type)
TIGR00057: Sua5/YciO/YrdC/YwlC family prote (db=HMMTigr db_id=TIGR00057 from=1 to=205 evalue=1.5e-72 interpro_id=IPR004388 interpro_description=Sua5/YciO/YrdC/YwlC)
AMDSBA1_58_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14499..15767)
-----------------
DNA (1269bp)
protein (423aa)
putative tyrosine transporter P-protein
putative tyrosine transporter P-protein
Citrate transporter n=2 Tax=Sulfobacillus acidophilus RepID=F8I9S2_SULAT (db=UNIREF evalue=2.3e-104 bit_score=384.8 identity=51.2 coverage=96.6903073286052)
AMDSBA1_58_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15818..16141)
-----------------
DNA (324bp)
protein (108aa)
Rhodanese/Cell cycle control phosphatase (db=superfamily db_id=SSF52821 from=1 to=96 evalue=1.6e-21 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=HMMSmart db_id=SM00450 from=6 to=102 evalue=2.0e-14 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=Gene3D db_id=G3DSA:3.40.250.10 from=4 to=98 evalue=4.4e-14 interpro_id=IPR001763 interpro_description=Rhodanese-like)
(db=HMMPfam db_id=PF00581 from=8 to=97 evalue=1.3e-12 interpro_id=IPR001763 interpro_description=Rhodanese-like)
AMDSBA1_58_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16343..17212)
-----------------
DNA (870bp)
protein (290aa)
hemK; HemK family modification methylase
Protein-(Glutamine-N5) methyltransferase n=1 Tax=Lactobacillus parafarraginis F0439 RepID=G9ZSU8_9LACO (db=UNIREF evalue=1.9e-28 bit_score=132.1 identity=32.4 coverage=86.20689655172413)
RF_mod_PrmC: protein-(glutamine-N5) methy (db=HMMTigr db_id=TIGR03534 from=29 to=278 evalue=3.4e-88 interpro_id=IPR019874 interpro_description=Protein-(glutamine-N5) methyltransferase, release factor-specific GO=Molecular Function: methyltransferase activity (GO:0008168))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=10 to=282 evalue=5.1e-54)
AMDSBA1_58_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17209..18282)
-----------------
DNA (1074bp)
protein (358aa)
peptide chain release factor 1 (bRF-1)
peptide chain release factor 1 (bRF-1)
Peptide chain release factor 1 n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=RF1_DESOH (db=UNIREF evalue=5.0e-108 bit_score=396.7 identity=55.7 coverage=97.20670391061452)
AMDSBA1_58_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18368..18649)
-----------------
DNA (282bp)
protein (94aa)
50S ribosomal protein L31P
50S ribosomal protein L31 n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ36_9FIRM (db=UNIREF evalue=2.8e-26 bit_score=123.2 identity=80.3 coverage=69.14893617021278)
L31: ribosomal protein L31 (db=HMMTigr db_id=TIGR00105 from=28 to=93 evalue=1.2e-37 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF01197 from=28 to=93 evalue=1.1e-29 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_58_25
Halorubrum lipolyticum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18832..20025)
-----------------
DNA (1194bp)
protein (398aa)
Putative cytochrome P450 142 n=39 Tax=Mycobacterium RepID=CP142_MYCTU (db=UNIREF evalue=5.7e-28 bit_score=131.0 identity=29.4 coverage=87.68844221105527)
seg (db=Seg db_id=seg from=240 to=253)
CYTOCHROME_P450 (db=PatternScan db_id=PS00086 from=339 to=348 evalue=0.0 interpro_id=IPR017972 interpro_description=Cytochrome P450, conserved site GO=Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Biological Process: oxidation-reduction process (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.10.630.10 from=8 to=395 evalue=1.1e-86 interpro_id=IPR001128 interpro_description=Cytochrome P450 GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Molecular Function: heme binding (GO:0020037), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_58_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20477..20644
-----------------
DNA (168bp)
protein (56aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TV45_9FIRM (db=UNIREF evalue=1.3e-10 bit_score=70.5 identity=70.8 coverage=83.92857142857143)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I1Q9_SULAT
Displaying 26 items

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