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AMDSBA3_6

Alias: AMDSBA3_C5

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Displaying items 1-30 of 96 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_6_1
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

306..995
DNA (690bp) protein (230aa)
thiaminase (EC:3.5.99.2)
Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9STU3_PHYPA (db=UNIREF evalue=1.3e-11 bit_score=75.9 identity=27.9 coverage=89.56521739130436)
seg (db=Seg db_id=seg from=176 to=185)
seg (db=Seg db_id=seg from=26 to=37)
AMDSBA3_6_2
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

992..1915
DNA (924bp) protein (308aa)
phosphomethylpyrimidine kinase
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase n=1 Tax=Microbacterium testaceum StLB037 RepID=E8NCI5_MICTS (db=UNIREF evalue=8.9e-45 bit_score=186.4 identity=41.4 coverage=90.5844155844156)
seg (db=Seg db_id=seg from=16 to=30)
seg (db=Seg db_id=seg from=119 to=128)
AMDSBA3_6_3
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1899..2726
DNA (828bp) protein (276aa)
hydroxyethylthiazole kinase (EC:2.7.1.50)
Thiamine biosynthesis bifunctional protein ThiM/ThiE n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=THIME_SYMTH (db=UNIREF evalue=1.9e-38 bit_score=165.2 identity=41.4 coverage=92.02898550724638)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
seg (db=Seg db_id=seg from=23 to=42)
AMDSBA3_6_4
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2731..3369
DNA (639bp) protein (213aa)
Thiamine-phosphate pyrophosphorylase
Thiamine-phosphate synthase n=1 Tax=Anaplasma phagocytophilum HZ RepID=Q2GJC3_ANAPZ (db=UNIREF evalue=2.1e-16 bit_score=91.7 identity=35.4 coverage=80.75117370892019)
thiE: thiamine-phosphate pyrophosphorylase (db=HMMTigr db_id=TIGR00693 from=9 to=202 evalue=2.1e-79 interpro_id=IPR003733 interpro_description=Thiamine monophosphate synthase GO=Molecular Function: thiamine-phosphate diphosphorylase activity (GO:0004789), Biological Process: thiamine biosynthetic process (GO:0009228))
Thiamin phosphate synthase (db=superfamily db_id=SSF51391 from=7 to=211 evalue=1.2e-61 interpro_id=IPR022998 interpro_description=Thiamin phosphate synthase superfamily)
AMDSBA3_6_5
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

3725..4282
DNA (558bp) protein (186aa)
tdk; thymidine kinase (EC:2.7.1.21)
Thymidine kinase, cytosolic n=6 Tax=Muroidea RepID=KITH_MOUSE (db=UNIREF evalue=4.9e-14 bit_score=83.6 identity=29.9 coverage=95.16129032258065)
Glucocorticoid receptor-like (DNA-binding domain) (db=superfamily db_id=SSF57716 from=140 to=180 evalue=4.0e-06)
Thymidine kinase (db=HMMPIR db_id=PIRSF035805 from=2 to=185 evalue=2.4e-44 interpro_id=IPR001267 interpro_description=Thymidine kinase GO=Molecular Function: thymidine kinase activity (GO:0004797), Molecular Function: ATP binding (GO:0005524))
AMDSBA3_6_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4400..5263)
DNA (864bp) protein (288aa)
korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta rbh
Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8U1M6_9FIRM (db=UNIREF evalue=1.6e-136 bit_score=491.1 identity=81.1 coverage=98.95833333333334)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=12 to=213 evalue=2.1e-69)
AMDSBA3_6_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5263..7017)
DNA (1755bp) protein (585aa)
2-oxoacid:acceptor oxidoreductase subunit alpha (EC:1.2.7.3) rbh
2-oxoacid:acceptor oxidoreductase subunit alpha (EC:1.2.7.3) rbh
2-oxoacid:ferredoxin oxidoreductase, alpha subunit n=1 Tax=Desulfomonile tiedjei DSM 6799 RepID=I4C1Z4_9DELT (db=UNIREF evalue=3.3e-32 bit_score=145.6 identity=30.7 coverage=57.43589743589743)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=190 to=458 evalue=1.6e-75)
AMDSBA3_6_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7215..7859)
DNA (645bp) protein (215aa)
hypothetical protein
UPF0637 protein BH2637 n=1 Tax=Bacillus halodurans C-125 RepID=Y2637_BACHD (db=UNIREF evalue=1.0e-23 bit_score=115.9 identity=34.1 coverage=96.27906976744185)
YktB/PF0168-like (db=superfamily db_id=SSF142913 from=3 to=212 evalue=1.3e-47)
(db=HMMPfam db_id=PF06335 from=7 to=204 evalue=3.3e-43 interpro_id=IPR009403 interpro_description=Protein of unknown function DUF1054)
AMDSBA3_6_9
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8081..8572
DNA (492bp) protein (164aa)
seg (db=Seg db_id=seg from=53 to=76)
seg (db=Seg db_id=seg from=35 to=50)
seg (db=Seg db_id=seg from=6 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=132 to=154)
AMDSBA3_6_10
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

8681..10465
DNA (1785bp) protein (595aa)
multidrug ABC transporter ATPase/permease
multidrug ABC transporter ATPase/permease
ABC transporter related n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PV16_CHIPD (db=UNIREF evalue=1.7e-108 bit_score=399.1 identity=36.5 coverage=94.62184873949579)
transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=276)
AMDSBA3_6_11
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

10455..12254
DNA (1800bp) protein (600aa)
ABC-type multidrug transport system, ATPase and permease component
ABC-type multidrug transport system, ATPase and permease component
Putative ABC transporter n=1 Tax=Enterococcus avium RepID=D2DXK8_ENTAV (db=UNIREF evalue=5.2e-57 bit_score=228.0 identity=27.5 coverage=95.16666666666667)
transmembrane_regions (db=TMHMM db_id=tmhmm from=282 to=304)
AMDSBA3_6_12
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12309..13790)
DNA (1482bp) protein (494aa)
glutamate synthase NADH/NADPH small subunit (EC:1.4.1.14)
glutamate synthase NADH/NADPH small subunit (EC:1.4.1.14)
Putative uncharacterized protein n=2 Tax=Lachnospiraceae RepID=A7B077_RUMGN (db=UNIREF evalue=9.6e-142 bit_score=509.2 identity=52.1 coverage=99.39271255060729)
AMDSBA3_6_13
Paenibacillus darwinianus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13812..18410)
DNA (4599bp) protein (1533aa)
glutamate synthase
glutamate synthase
Glutamate synthase alpha subunit n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W6I9_9FLAO (db=UNIREF evalue=0.0 bit_score=1478.0 identity=49.8 coverage=97.12981082844097)
seg (db=Seg db_id=seg from=645 to=656)
AMDSBA3_6_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18874..19188)
DNA (315bp) protein (105aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SPH9_9BACL (db=UNIREF evalue=4.0e-13 bit_score=79.7 identity=46.4 coverage=79.04761904761905)
(db=HMMPfam db_id=PF01910 from=4 to=95 evalue=1.3e-23 interpro_id=IPR002767 interpro_description=Protein of unknown function DUF77)
MTH1187/YkoF-like (db=superfamily db_id=SSF89957 from=1 to=96 evalue=4.5e-22 interpro_id=IPR016198 interpro_description=Thiamin/hydroxymethyl pyrimidine-binding protein-like, putative)
AMDSBA3_6_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19250..19645)
DNA (396bp) protein (132aa)
Aspartate 1-decarboxylase 3 n=2 Tax=Sulfobacillus acidophilus RepID=G8U1L4_9FIRM (db=UNIREF evalue=9.7e-49 bit_score=198.4 identity=73.8 coverage=94.6969696969697)
L-aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase (db=HMMPIR db_id=PIRSF006246 from=1 to=128 evalue=3.9e-50 interpro_id=IPR003190 interpro_description=Aspartate decarboxylase GO=Molecular Function: aspartate 1-decarboxylase activity (GO:0004068), Biological Process: alanine biosynthetic process (GO:0006523))
ASPARTATE 1-DECARBOXYLASE (db=HMMPanther db_id=PTHR21012 from=2 to=119 evalue=6.8e-44 interpro_id=IPR003190 interpro_description=Aspartate decarboxylase GO=Molecular Function: aspartate 1-decarboxylase activity (GO:0004068), Biological Process: alanine biosynthetic process (GO:0006523))
AMDSBA3_6_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19823..20158
DNA (336bp) protein (112aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U1L3_9FIRM (db=UNIREF evalue=2.0e-23 bit_score=114.0 identity=54.1 coverage=83.92857142857143)
Uncharacterized protein n=1 Tax=Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) RepID=G8U1L3_SULAD
Uncharacterized protein {ECO:0000313|EMBL:AEW06618.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA3_6_17
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

20331..21206
DNA (876bp) protein (292aa)
hypothetical protein
Aldo/keto reductase n=2 Tax=Sulfobacillus acidophilus RepID=G8TS68_9FIRM (db=UNIREF evalue=1.4e-68 bit_score=265.4 identity=51.4 coverage=98.63013698630137)
NAD(P)-linked oxidoreductase (db=superfamily db_id=SSF51430 from=8 to=285 evalue=3.8e-72 interpro_id=IPR023210 interpro_description=NADP-dependent oxidoreductase domain)
no description (db=Gene3D db_id=G3DSA:3.20.20.100 from=8 to=285 evalue=7.4e-70 interpro_id=IPR023210 interpro_description=NADP-dependent oxidoreductase domain)
AMDSBA3_6_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21576..22748
DNA (1173bp) protein (391aa)
Major facilitator superfamily MFS_1 n=2 Tax=Sulfobacillus acidophilus RepID=G8U1L1_9FIRM (db=UNIREF evalue=9.2e-172 bit_score=608.6 identity=69.8 coverage=98.9769820971867)
major facilitator superfamily protein rbh
major facilitator superfamily protein rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=237 to=259)
AMDSBA3_6_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22762..23145
DNA (384bp) protein (128aa)
FxsA cytoplasmic membrane protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U1L0_9FIRM (db=UNIREF evalue=1.3e-42 bit_score=177.9 identity=62.4 coverage=96.875)
FxsA cytoplasmic membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=77 to=99)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA3_6_20
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23801..25003
DNA (1203bp) protein (401aa)
family 2 glycosyl transferase (db=KEGG evalue=1.9e-10 bit_score=72.4 identity=25.2 coverage=84.78802992518703)
Glycosyl transferase family 2 n=1 Tax=Desulfotomaculum ruminis DSM 2154 RepID=F6DN55_DESRL (db=UNIREF evalue=2.4e-10 bit_score=72.4 identity=25.2 coverage=84.78802992518703)
seg (db=Seg db_id=seg from=196 to=207)
seg (db=Seg db_id=seg from=35 to=39)
AMDSBA3_6_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25096..25668
DNA (573bp) protein (191aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U1K4_9FIRM (db=UNIREF evalue=2.4e-93 bit_score=347.1 identity=85.6 coverage=97.90575916230367)
AMDSBA3_6_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25683..26498
DNA (816bp) protein (272aa)
MotA/TolQ/ExbB proton channel rbh
Putative flagellar motor component (MotA) n=2 Tax=Leptospirillum sp. Group II RepID=A3EPP3_9BACT (db=UNIREF evalue=8.4e-47 bit_score=193.0 identity=39.2 coverage=94.48529411764706)
transmembrane_regions (db=TMHMM db_id=tmhmm from=150 to=172)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
AMDSBA3_6_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26495..27250
DNA (756bp) protein (252aa)
motB; OmpA/MotB domain-containing protein
OmpA/MotB domain protein n=2 Tax=Marinobacter hydrocarbonoclasticus RepID=A1U534_MARAV (db=UNIREF evalue=6.4e-09 bit_score=67.0 identity=26.0 coverage=84.92063492063492)
seg (db=Seg db_id=seg from=144 to=158)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBA3_6_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27277..27645
DNA (369bp) protein (123aa)
seg (db=Seg db_id=seg from=74 to=84)
flagellar basal body rod protein
Flagellar basal-body rod protein FlgB n=2 Tax=Sulfobacillus acidophilus RepID=F8IC57_SULAT
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.
AMDSBA3_6_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27645..28064
DNA (420bp) protein (140aa)
flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC n=2 Tax=Sulfobacillus acidophilus RepID=G8U1K0_9FIRM (db=UNIREF evalue=3.8e-51 bit_score=206.5 identity=72.3 coverage=97.14285714285714)
seg (db=Seg db_id=seg from=48 to=54)
seg (db=Seg db_id=seg from=59 to=69)
AMDSBA3_6_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28061..28354
DNA (294bp) protein (98aa)
seg (db=Seg db_id=seg from=3 to=14)
(db=HMMPfam db_id=PF02049 from=16 to=96 evalue=4.1e-19 interpro_id=IPR001624 interpro_description=Flagellar hook-basal body complex protein FliE GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
fliE: flagellar hook-basal body complex prot (db=HMMTigr db_id=TIGR00205 from=1 to=96 evalue=1.9e-06 interpro_id=IPR001624 interpro_description=Flagellar hook-basal body complex protein FliE GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
FLGHOOKFLIE (db=FPrintScan db_id=PR01006 from=81 to=94 evalue=1.1e-05 interpro_id=IPR001624 interpro_description=Flagellar hook-basal body complex protein FliE GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
AMDSBA3_6_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28371..29954
DNA (1584bp) protein (528aa)
flagellar M-ring protein FliF rbh
Flagellar M-ring protein FliF n=1 Tax=Aminomonas paucivorans DSM 12260 RepID=E3CVS1_9BACT (db=UNIREF evalue=4.3e-55 bit_score=221.5 identity=32.0 coverage=97.53787878787878)
seg (db=Seg db_id=seg from=300 to=339)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=47)
AMDSBA3_6_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29956..30960
DNA (1005bp) protein (335aa)
Flagellar motor switch protein FliG n=2 Tax=Sulfobacillus acidophilus RepID=G8U1J7_9FIRM (db=UNIREF evalue=2.6e-146 bit_score=523.9 identity=79.9 coverage=99.1044776119403)
flagellar motor switch protein FliG rbh
flagellar motor switch protein FliG rbh
coiled-coil (db=Coil db_id=coil from=299 to=323 evalue=NA)
AMDSBA3_6_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30944..31630
DNA (687bp) protein (229aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U1J6_9FIRM (db=UNIREF evalue=1.1e-52 bit_score=212.2 identity=48.2 coverage=98.2532751091703)
coiled-coil (db=Coil db_id=coil from=46 to=78 evalue=NA)
seg (db=Seg db_id=seg from=74 to=93)
AMDSBA3_6_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31627..32994
DNA (1368bp) protein (456aa)
type III secretion system ATPase, FliI/YscN (EC:3.6.3.15) rbh
type III secretion system ATPase, FliI/YscN (EC:3.6.3.15) rbh
Flagellar export protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8URC2_9AQUI (db=UNIREF evalue=1.5e-80 bit_score=305.8 identity=41.9 coverage=89.69298245614034)
Displaying items 1-30 of 96 in total

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