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AMDSBA3_18

Alias: AMDSBA3_C17

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Displaying items 1-30 of 49 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_18_1
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

113..1324
DNA (1212bp) protein (404aa)
major facilitator superfamily protein
Putative uncharacterized protein n=1 Tax=Dictyostelium purpureum RepID=F0Z629_DICPU (db=UNIREF evalue=1.4e-08 bit_score=66.6 identity=29.0 coverage=43.81188118811881)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=96)
AMDSBA3_18_2
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1480..3081
DNA (1602bp) protein (534aa)
Signal transduction protein containing a membrane domain an EAL anda GGDEF domain-like n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TU97_9RHOB (db=UNIREF evalue=1.0e-11 bit_score=77.4 identity=32.1 coverage=37.453183520599254)
seg (db=Seg db_id=seg from=346 to=353)
seg (db=Seg db_id=seg from=48 to=58)
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=375 to=533 evalue=3.2e-15 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
AMDSBA3_18_3
Bacillus ginsengihumi, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3573..4172
DNA (600bp) protein (200aa)
2-dehydro-3-deoxyphosphogluconate aldolase
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Halorubrum lacusprofundi ATCC 49239 RepID=B9LW30_HALLT (db=UNIREF evalue=3.0e-25 bit_score=120.9 identity=37.4 coverage=89.5)
seg (db=Seg db_id=seg from=73 to=85)
seg (db=Seg db_id=seg from=27 to=37)
AMDSBA3_18_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4169..5113
DNA (945bp) protein (315aa)
2-dehydro-3-deoxygluconokinase (EC:2.7.1.45)
2-dehydro-3-deoxygluconokinase n=2 Tax=Sulfobacillus acidophilus RepID=G8TTH7_9FIRM (db=UNIREF evalue=9.1e-61 bit_score=239.6 identity=45.1 coverage=95.87301587301587)
seg (db=Seg db_id=seg from=252 to=266)
PFKB_KINASES_2 (db=PatternScan db_id=PS00584 from=251 to=264 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site GO=Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
AMDSBA3_18_5
unknown

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5243..5446
DNA (204bp) protein (68aa)
5243..5446 + ( gc_cont=0.564)
AMDSBA3_18_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5617..6558)
DNA (942bp) protein (314aa)
oxyR; LysR family transcriptional regulator
Transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X721_OXAFO (db=UNIREF evalue=4.5e-20 bit_score=104.4 identity=26.0 coverage=90.76433121019109)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=81 to=299 evalue=1.5e-40)
(db=HMMPfam db_id=PF03466 from=88 to=291 evalue=9.8e-39 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
AMDSBA3_18_7
unknown

Not on your lists

comp(6908..7360)
DNA (453bp) protein (151aa)
6908..7360 - ( gc_cont=0.574)
AMDSBA3_18_8
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7628..8884
DNA (1257bp) protein (419aa)
formyl-coenzyme A transferase (EC:2.8.3.16)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVP3_9PROT (db=UNIREF evalue=2.0e-07 bit_score=62.8 identity=28.3 coverage=33.89021479713604)
CoA-transferase family III (CaiB/BaiF) (db=superfamily db_id=SSF89796 from=1 to=416 evalue=8.9e-132 interpro_id=IPR023606 interpro_description=CoA-transferase family III domain)
seg (db=Seg db_id=seg from=242 to=252)
AMDSBA3_18_9
Providencia stuartii, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9004..10671
DNA (1668bp) protein (556aa)
putative oxalyl-CoA decarboxylase (EC:4.1.1.8)
putative oxalyl-CoA decarboxylase (EC:4.1.1.8)
Oxalyl-CoA decarboxylase oxcA n=45 Tax=Mycobacterium tuberculosis complex RepID=A2VN47_MYCTU (db=UNIREF evalue=3.2e-202 bit_score=710.3 identity=63.7 coverage=99.10071942446042)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=1 to=186 evalue=2.5e-41)
AMDSBA3_18_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10692..11138
DNA (447bp) protein (149aa)
putative PAS/PAC sensor protein
Transcriptional regulator n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRU6_9BRAD (db=UNIREF evalue=1.1e-37 bit_score=161.8 identity=55.6 coverage=94.63087248322147)
TWO COMPONENT HISTIDINE KINASE (SPORULATION KINASE) (db=HMMPanther db_id=PTHR23283:SF24 from=11 to=136 evalue=2.4e-11)
PYP-like sensor domain (PAS domain) (db=superfamily db_id=SSF55785 from=18 to=136 evalue=4.0e-27)
AMDSBA3_18_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11164..13098
DNA (1935bp) protein (645aa)
NAD-dependent formate dehydrogenase catalytic subunit (EC:1.7.99.4)
NAD-dependent formate dehydrogenase catalytic subunit n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8TT95_9FIRM (db=UNIREF evalue=2.2e-25 bit_score=120.2 identity=68.2 coverage=98.86363636363636)
Formate dehydrogenase/DMSO reductase, domains 1-3 (db=superfamily db_id=SSF53706 from=9 to=86 evalue=1.5e-18)
no description (db=Gene3D db_id=G3DSA:3.40.50.740 from=12 to=87 evalue=2.4e-16)
AMDSBA3_18_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13101..13550
DNA (450bp) protein (150aa)
NADH-quinone oxidoreductase subunit F 2
Formate dehydrogenase, beta subunit n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JTW2_9RHOB (db=UNIREF evalue=1.5e-16 bit_score=91.7 identity=37.3 coverage=90.0)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=4 to=145 evalue=8.2e-29 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
(db=HMMPfam db_id=PF01257 from=12 to=144 evalue=6.3e-27 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_18_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13543..14769
DNA (1227bp) protein (409aa)
respiratory-chain NADH dehydrogenase domain 51 kDa subunit
Hydrogenosomal Fe-hydrogenase (Fragment) n=2 Tax=Nyctotherus ovalis RepID=Q1M172_NYCOV (db=UNIREF evalue=5.0e-43 bit_score=181.0 identity=33.1 coverage=85.08557457212714)
NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) (db=HMMPanther db_id=PTHR11780 from=17 to=408 evalue=9.8e-124)
seg (db=Seg db_id=seg from=266 to=285)
AMDSBA3_18_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14775..15611
DNA (837bp) protein (279aa)
MOLYBDOPTERIN_PROK_1 (db=PatternScan db_id=PS00551 from=226 to=244 evalue=0.0 interpro_id=IPR006655 interpro_description=Molybdopterin oxidoreductase, prokaryotic, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on other nitrogenous compounds as donors (GO:0016661), Biological Process: oxidation-reduction process (GO:0055114))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=143 to=154 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=187 to=198 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
NADH-UBIQUINONE OXIDOREDUCTASE (db=HMMPanther db_id=PTHR11615:SF10 from=18 to=277 evalue=6.1e-34)
AMDSBA3_18_16
unknown

Not on your lists

15849..16043
DNA (195bp) protein (65aa)
15849..16043 + ( gc_cont=0.621)
AMDSBA3_18_17
unknown

Not on your lists

16103..16375
DNA (273bp) protein (91aa)
seg (db=Seg db_id=seg from=48 to=57)
AMDSBA3_18_18
Metallosphaera sedula, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

17081..18631
DNA (1551bp) protein (517aa)
major facilitator transporter
major facilitator transporter
Major facilitator superfamily MFS_1 n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YG13_METS5 (db=UNIREF evalue=1.7e-104 bit_score=385.6 identity=43.9 coverage=84.33268858800773)
transmembrane_regions (db=TMHMM db_id=tmhmm from=213 to=235)
AMDSBA3_18_19
unknown

Not on your lists

18713..18865
DNA (153bp) protein (51aa)
seg (db=Seg db_id=seg from=22 to=33)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBA3_18_20
unknown

Not on your lists

comp(19016..19219)
DNA (204bp) protein (68aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=26 to=42)
AMDSBA3_18_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19346..20290)
DNA (945bp) protein (315aa)
oxyR; LysR family transcriptional regulator
Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CW97_9CLOT (db=UNIREF evalue=3.2e-21 bit_score=108.2 identity=25.9 coverage=91.42857142857143)
seg (db=Seg db_id=seg from=35 to=48)
(db=HMMPfam db_id=PF03466 from=88 to=290 evalue=5.6e-43 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
AMDSBA3_18_22
unknown

Not on your lists

20576..22081
DNA (1506bp) protein (502aa)
20576..22081 + ( gc_cont=0.568)
AMDSBA3_18_23
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(22244..22588)
DNA (345bp) protein (115aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U180_9FIRM (db=UNIREF evalue=5.2e-22 bit_score=109.4 identity=52.6 coverage=96.52173913043478)
DsrEFH-like (db=superfamily db_id=SSF75169 from=1 to=112 evalue=4.8e-12)
(db=HMMPfam db_id=PF02635 from=3 to=112 evalue=1.6e-11 interpro_id=IPR003787 interpro_description=Sulphur relay, DsrE/F-like protein)
AMDSBA3_18_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23300..24775
DNA (1476bp) protein (492aa)
glpA; FAD dependent oxidoreductase
glpA; FAD dependent oxidoreductase
Glycerol 3-phosphate dehydrogenase (Quinone) subunit A n=2 Tax=Sulfobacillus acidophilus RepID=G8TSQ4_9FIRM (db=UNIREF evalue=3.0e-143 bit_score=514.2 identity=54.1 coverage=97.96747967479675)
AMDSBA3_18_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24759..25922
DNA (1164bp) protein (388aa)
monooxygenase FAD-binding protein
Monooxygenase FAD-binding protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSQ5_9FIRM (db=UNIREF evalue=9.4e-68 bit_score=263.1 identity=40.4 coverage=92.5257731958763)
seg (db=Seg db_id=seg from=238 to=249)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=300 evalue=3.5e-13)
AMDSBA3_18_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25925..27091
DNA (1167bp) protein (389aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSQ6_9FIRM (db=UNIREF evalue=4.8e-104 bit_score=383.6 identity=50.9 coverage=99.22879177377892)
seg (db=Seg db_id=seg from=374 to=383)
seg (db=Seg db_id=seg from=185 to=201)
AMDSBA3_18_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27088..27678
DNA (591bp) protein (197aa)
glpP; glycerol-3-phosphate responsive antiterminator GlpP
Glycerol-3-phosphate responsive antiterminator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWA1_HALOH (db=UNIREF evalue=6.6e-25 bit_score=119.8 identity=38.1 coverage=77.66497461928934)
GlpP-like (db=superfamily db_id=SSF110391 from=8 to=185 evalue=3.3e-52 interpro_id=IPR006699 interpro_description=Glycerol-3-phosphate responsive antiterminator GO=Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Biological Process: response to biotic stimulus (GO:0009607))
(db=HMMPfam db_id=PF04309 from=9 to=183 evalue=1.5e-47 interpro_id=IPR006699 interpro_description=Glycerol-3-phosphate responsive antiterminator GO=Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Biological Process: response to biotic stimulus (GO:0009607))
AMDSBA3_18_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27675..29201
DNA (1527bp) protein (509aa)
glpK; glycerol kinase 2
glpK; glycerol kinase 2
Glycerol kinase n=13 Tax=Clostridium RepID=GLPK_CLOB1 (db=UNIREF evalue=6.6e-154 bit_score=549.7 identity=52.7 coverage=97.05304518664047)
AMDSBA3_18_29
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29326..30711
DNA (1386bp) protein (462aa)
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein
Bacterial extracellular solute-binding protein n=4 Tax=Propionibacterium RepID=E4ADJ2_PROAA (db=UNIREF evalue=6.3e-10 bit_score=71.2 identity=24.9 coverage=73.16017316017316)
seg (db=Seg db_id=seg from=32 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
AMDSBA3_18_30
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30677..31645
DNA (969bp) protein (323aa)
Putative sugar ABC transporter (permease protein); putative glycerol 3-phosphate transport protein, ugpA-like protein
sn-glycerol-3-phosphate ABC transporter n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JEE5_AGRRK (db=UNIREF evalue=5.1e-59 bit_score=233.8 identity=42.1 coverage=86.37770897832817)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
transmembrane_regions (db=TMHMM db_id=tmhmm from=293 to=315)
AMDSBA3_18_31
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31642..32484
DNA (843bp) protein (281aa)
ugpE; sn-glycerol-3-phosphate ABC transporter permease
Probable sn-glycerol-3-phosphate transmembrane abc transporter protein n=1 Tax=Sagittula stellata E-37 RepID=A3KAH1_9RHOB (db=UNIREF evalue=4.9e-74 bit_score=283.5 identity=51.4 coverage=97.15302491103202)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=248 to=267)
Displaying items 1-30 of 49 in total

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