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AMDSBA3_24

Alias: AMDSBA3_C23

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Displaying items 1-30 of 57 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_24_1
Streptomyces niveus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(83..412)
DNA (330bp) protein (110aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5I8_9ARCH (db=UNIREF evalue=2.5e-13 bit_score=80.5 identity=43.6 coverage=83.63636363636363)
(db=HMMPfam db_id=PF04343 from=10 to=106 evalue=1.1e-17 interpro_id=IPR007438 interpro_description=Protein of unknown function DUF488)
Uncharacterized protein {ECO:0000313|EMBL:EST20377.1}; TaxID=1352941 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces niveus NCIMB 11891.;"
AMDSBA3_24_2
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(586..1032)
DNA (447bp) protein (149aa)
hypothetical protein
Predicted redox protein, regulator of disulfide bond formation n=5 Tax=Paenibacillus RepID=E0RI02_PAEP6 (db=UNIREF evalue=1.5e-10 bit_score=71.6 identity=32.3 coverage=86.57718120805369)
seg (db=Seg db_id=seg from=114 to=123)
OsmC-like (db=superfamily db_id=SSF82784 from=3 to=143 evalue=3.3e-24 interpro_id=IPR003718 interpro_description=Peroxiredoxin, OsmC-like protein GO=Biological Process: response to stress (GO:0006950))
AMDSBA3_24_3
unknown

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comp(1163..1576)
DNA (414bp) protein (138aa)
seg (db=Seg db_id=seg from=121 to=137)
AMDSBA3_24_4
unknown

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comp(2012..2101)
DNA (90bp) protein (30aa)
2012..2101 - ( gc_cont=0.489)
AMDSBA3_24_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2488..3771)
DNA (1284bp) protein (428aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8ICB7_SULAT (db=UNIREF evalue=1.0e-62 bit_score=246.5 identity=38.7 coverage=94.1588785046729)
transmembrane_regions (db=TMHMM db_id=tmhmm from=394 to=416)
transmembrane_regions (db=TMHMM db_id=tmhmm from=368 to=390)
AMDSBA3_24_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3768..5042)
DNA (1275bp) protein (425aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSQ2_9FIRM (db=UNIREF evalue=2.9e-78 bit_score=298.1 identity=39.4 coverage=97.88235294117648)
hypothetical protein
seg (db=Seg db_id=seg from=365 to=377)
seg (db=Seg db_id=seg from=160 to=167)
AMDSBA3_24_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5057..5554)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=7 Tax=Geobacillus RepID=B4BIL8_9BACI (db=UNIREF evalue=3.3e-09 bit_score=67.4 identity=52.2 coverage=40.963855421686745)
SirA-like (db=superfamily db_id=SSF64307 from=87 to=165 evalue=2.0e-10 interpro_id=IPR001455 interpro_description=TusA-like domain)
(db=HMMPfam db_id=PF10006 from=98 to=161 evalue=4.5e-08 interpro_id=IPR018720 interpro_description=Domain of unknown function DUF2249)
universal stress protein
AMDSBA3_24_8
unknown

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5953..6120
DNA (168bp) protein (56aa)
5953..6120 + ( gc_cont=0.530)
AMDSBA3_24_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6231..6416)
DNA (186bp) protein (62aa)
seg (db=Seg db_id=seg from=48 to=55)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8ICA9_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ41806.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA3_24_10
Methanoculleus bourgensis, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6438..6722)
DNA (285bp) protein (95aa)
6438..6722 - ( gc_cont=0.582)
transposase
Methanoculleus bourgensis MS2 complete genome n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7KY06_METBM
Transposase {ECO:0000313|EMBL:CCJ35450.1}; TaxID=1201294 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus.;" source="Methanoculleus bourgensis
AMDSBA3_24_11
unknown

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comp(7394..7483)
DNA (90bp) protein (30aa)
7394..7483 - ( gc_cont=0.500)
AMDSBA3_24_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7627..8106
DNA (480bp) protein (160aa)
hypothetical protein
Uncharacterized protein ydfG n=9 Tax=Bacillus RepID=YDFG_BACSU (db=UNIREF evalue=3.4e-24 bit_score=117.1 identity=41.7 coverage=85.625)
AhpD-like (db=superfamily db_id=SSF69118 from=8 to=150 evalue=5.4e-42)
(db=HMMPfam db_id=PF02627 from=18 to=100 evalue=2.2e-21 interpro_id=IPR003779 interpro_description=Carboxymuconolactone decarboxylase GO=Molecular Function: peroxiredoxin activity (GO:0051920), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_24_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9401..9634)
DNA (234bp) protein (78aa)
(db=HMMPfam db_id=PF10006 from=12 to=75 evalue=1.8e-20 interpro_id=IPR018720 interpro_description=Domain of unknown function DUF2249)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ41813.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA3_24_14
Lactobacillus gastricus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(10185..10577)
DNA (393bp) protein (131aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=51)
seg (db=Seg db_id=seg from=35 to=56)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=32 to=123 evalue=8.6e-09 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Phosphomevalonate kinase {ECO:0000313|EMBL:EHS86441.1}; TaxID=1144300 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gastricus PS3.;"
AMDSBA3_24_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10617..10775
DNA (159bp) protein (53aa)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=8 to=52 evalue=7.0e-14 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=5 to=52 evalue=1.1e-11)
PEROXIREDOXIN-RELATED (db=HMMPanther db_id=PTHR10681:SF10 from=5 to=52 evalue=1.1e-11)
(db=HMMPfam db_id=PF00578 from=14 to=52 evalue=6.5e-09 interpro_id=IPR000866 interpro_description=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO=Molecular Function: antioxidant activity (GO:0016209), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_24_16
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10851..11270
DNA (420bp) protein (140aa)
ahpC; peroxiredoxin
Probable peroxiredoxin n=1 Tax=Aquifex aeolicus VF5 RepID=TDXH_AQUAE (db=UNIREF evalue=2.6e-20 bit_score=104.0 identity=39.0 coverage=95.0)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=1 to=128 evalue=2.6e-41)
PEROXIREDOXIN-RELATED (db=HMMPanther db_id=PTHR10681:SF10 from=1 to=128 evalue=2.6e-41)
AMDSBA3_24_17
unknown

Not on your lists

11433..11810
DNA (378bp) protein (126aa)
seg (db=Seg db_id=seg from=22 to=35)
AMDSBA3_24_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11785..12111
DNA (327bp) protein (109aa)
rieske (2Fe-2S) iron-sulfur domain-containing protein
Rieske (2Fe-2S) iron-sulfur domain n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M5U6_9FIRM (db=UNIREF evalue=4.7e-17 bit_score=92.8 identity=40.8 coverage=92.66055045871559)
no description (db=Gene3D db_id=G3DSA:2.102.10.10 from=2 to=103 evalue=4.9e-27 interpro_id=IPR017941 interpro_description=Rieske [2Fe-2S] iron-sulphur domain GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537), Biological Process: oxidation-reduction process (GO:0055114))
ISP domain (db=superfamily db_id=SSF50022 from=5 to=107 evalue=5.9e-27 interpro_id=IPR017941 interpro_description=Rieske [2Fe-2S] iron-sulphur domain GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_24_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12863..13345
DNA (483bp) protein (161aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
Predicted NADH dehydrogenase n=1 Tax=Methanothermobacter marburgensis str. Marburg RepID=D9PU46_METTM (db=UNIREF evalue=8.8e-28 bit_score=129.0 identity=45.5 coverage=88.81987577639751)
NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) (db=HMMPanther db_id=PTHR11780 from=16 to=153 evalue=2.6e-55)
Nqo1 FMN-binding domain-like (db=superfamily db_id=SSF142019 from=14 to=82 evalue=2.4e-24)
AMDSBA3_24_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13345..13683
DNA (339bp) protein (113aa)
NADH-ubiquinone oxidoreductase protein, chain F n=7 Tax=Rhizobiaceae RepID=B3PY61_RHIE6 (db=UNIREF evalue=1.2e-23 bit_score=114.8 identity=46.6 coverage=90.2654867256637)
NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) (db=HMMPanther db_id=PTHR11780 from=1 to=102 evalue=3.2e-35)
Nqo1C-terminal domain-like (db=superfamily db_id=SSF140490 from=6 to=109 evalue=3.9e-30)
(db=HMMPfam db_id=PF10589 from=10 to=55 evalue=9.1e-14 interpro_id=IPR019575 interpro_description=NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding GO=Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_24_21

Not on your lists

13705..14061
DNA (357bp) protein (119aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C1F6_SPHTD (db=UNIREF evalue=2.2e-07 bit_score=60.8 identity=47.8 coverage=55.46218487394958)
(db=HMMPfam db_id=PF10006 from=6 to=73 evalue=1.3e-14 interpro_id=IPR018720 interpro_description=Domain of unknown function DUF2249)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PES8_9ZZZZ
AMDSBA3_24_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14384..14851)
DNA (468bp) protein (156aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT86_9FIRM (db=UNIREF evalue=1.8e-17 bit_score=94.7 identity=45.2 coverage=75.0)
Uncharacterized protein {ECO:0000313|EMBL:AEJ40753.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I3E5_SULAT
AMDSBA3_24_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14935..16251)
DNA (1317bp) protein (439aa)
hypothetical protein
Putative transmembrane protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M4C9_9FIRM (db=UNIREF evalue=3.7e-52 bit_score=211.5 identity=47.1 coverage=55.125284738041)
transmembrane_regions (db=TMHMM db_id=tmhmm from=290 to=312)
transmembrane_regions (db=TMHMM db_id=tmhmm from=327 to=349)
AMDSBA3_24_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16283..16561)
DNA (279bp) protein (93aa)
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TJG2_9CHLR (db=UNIREF evalue=4.2e-22 bit_score=109.4 identity=55.7 coverage=90.32258064516128)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=51 to=62 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=2 to=91 evalue=3.0e-21)
AMDSBA3_24_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16572..17009)
DNA (438bp) protein (146aa)
cupin
Cupin 2 conserved barrel domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX79_9FIRM (db=UNIREF evalue=8.0e-28 bit_score=129.0 identity=52.2 coverage=77.3972602739726)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=27 to=129 evalue=5.4e-13 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
(db=HMMPfam db_id=PF07883 from=61 to=122 evalue=7.4e-05 interpro_id=IPR013096 interpro_description=Cupin 2, conserved barrel)
AMDSBA3_24_26
unknown

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comp(17028..17672)
DNA (645bp) protein (215aa)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=80 to=180 evalue=1.2e-06)
AMDSBA3_24_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17672..18139)
DNA (468bp) protein (156aa)
Hemerythrin HHE cation binding domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TTP9_9FIRM (db=UNIREF evalue=1.8e-57 bit_score=227.6 identity=71.0 coverage=98.71794871794873)
hemerythrin hhE cation binding domain-containing protein
(db=HMMPfam db_id=PF01814 from=77 to=136 evalue=8.9e-06 interpro_id=IPR012312 interpro_description=Haemerythrin/HHE cation-binding motif)
(db=HMMPfam db_id=PF01814 from=40 to=65 evalue=0.3 interpro_id=IPR012312 interpro_description=Haemerythrin/HHE cation-binding motif)
AMDSBA3_24_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18450..18758
DNA (309bp) protein (103aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5CVH0_9BACE (db=UNIREF evalue=3.8e-16 bit_score=89.7 identity=39.6 coverage=92.23300970873787)
Fe-S cluster assembly (FSCA) domain-like (db=superfamily db_id=SSF117916 from=1 to=101 evalue=9.8e-33)
(db=HMMPfam db_id=PF01883 from=6 to=80 evalue=1.0e-24 interpro_id=IPR002744 interpro_description=Domain of unknown function DUF59)
AMDSBA3_24_29
Hyphomonas johnsonii, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19299..20300)
DNA (1002bp) protein (334aa)
tellurite resistance protein-like permease
C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JTN9_9MYCO (db=UNIREF evalue=5.7e-21 bit_score=107.5 identity=30.7 coverage=85.92814371257485)
transmembrane_regions (db=TMHMM db_id=tmhmm from=306 to=328)
transmembrane_regions (db=TMHMM db_id=tmhmm from=279 to=301)
AMDSBA3_24_30
Streptomyces sp. Tu 6176, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20683..21054)
DNA (372bp) protein (124aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Streptomyces RepID=D9UD82_9ACTO (db=UNIREF evalue=1.7e-18 bit_score=97.8 identity=51.5 coverage=77.41935483870968)
(db=HMMPfam db_id=PF04343 from=9 to=114 evalue=2.2e-20 interpro_id=IPR007438 interpro_description=Protein of unknown function DUF488)
MarR family transcriptional regulator {ECO:0000313|EMBL:EYT82677.1}; TaxID=1470557 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Tu 6
Displaying items 1-30 of 57 in total

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