ggKbase home page

AMDSBA3_30

Alias: AMDSBA3_C29

Search features with annotation key words

Displaying items 1-30 of 44 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_30_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(238..1437)
DNA (1200bp) protein (400aa)
peptidoglycan-binding domain 1 protein
peptidoglycan-binding domain 1 protein
Peptidoglycan-binding domain 1 protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT73_9FIRM (db=UNIREF evalue=5.8e-113 bit_score=413.3 identity=51.9 coverage=97.75)
AMDSBA3_30_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1653..2624
DNA (972bp) protein (324aa)
hypothetical protein
seg (db=Seg db_id=seg from=291 to=302)
seg (db=Seg db_id=seg from=135 to=161)
seg (db=Seg db_id=seg from=83 to=95)
AMDSBA3_30_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2583..3416)
DNA (834bp) protein (278aa)
multi-copper enzyme maturation ABC transporter permease
ABC-type transport system involved in multi-copper enzyme maturation, permease component n=2 Tax=Sulfobacillus acidophilus RepID=G8TUT5_9FIRM (db=UNIREF evalue=3.2e-78 bit_score=297.4 identity=56.1 coverage=99.28057553956835)
seg (db=Seg db_id=seg from=234 to=245)
seg (db=Seg db_id=seg from=151 to=170)
AMDSBA3_30_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3416..4336)
DNA (921bp) protein (307aa)
ABC transporter
ABC transporter
ABC transporter related protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUT6_9FIRM (db=UNIREF evalue=3.3e-92 bit_score=344.0 identity=59.7 coverage=97.39413680781759)
AMDSBA3_30_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4333..5391)
DNA (1059bp) protein (353aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUU0_9FIRM (db=UNIREF evalue=2.2e-84 bit_score=318.2 identity=49.3 coverage=95.46742209631728)
AMDSBA3_30_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5388..5909)
DNA (522bp) protein (174aa)
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sulfobacillus acidophilus RepID=G8TUU1_9FIRM (db=UNIREF evalue=1.5e-52 bit_score=211.5 identity=66.3 coverage=93.10344827586206)
seg (db=Seg db_id=seg from=76 to=88)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=6 to=159 evalue=6.0e-32 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:001698
AMDSBA3_30_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6253..6537)
DNA (285bp) protein (95aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I388_SULAT (db=UNIREF evalue=6.6e-23 bit_score=112.1 identity=53.3 coverage=93.6842105263158)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I388_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ39492.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA3_30_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6730..7062
DNA (333bp) protein (111aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUU5_9FIRM (db=UNIREF evalue=2.9e-38 bit_score=163.3 identity=73.4 coverage=97.2972972972973)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I387_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ39491.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA3_30_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7081..8535
DNA (1455bp) protein (485aa)
alternative thymidylate synthase rbh
alternative thymidylate synthase rbh
Alternative thymidylate synthase n=1 Tax=Terriglobus roseus DSM 18391 RepID=I3ZLA9_9BACT (db=UNIREF evalue=2.4e-68 bit_score=265.4 identity=39.9 coverage=84.12371134020619)
(db=HMMPfam db_id=PF02511 from=16 to=212 evalue=1.7e-13 interpro_id=IPR003669 interpro_description=Thymidylate synthase ThyX GO=Biological Process: dTMP biosynthetic process (GO:0006231), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Molecular Function: thymidylate synthase (FAD) activity (GO:0050797))
AMDSBA3_30_10
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8627..9631
DNA (1005bp) protein (335aa)
tryptophan--tRNA ligase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase n=1 Tax=Nitratifractor salsuginis DSM 16511 RepID=E6X1I2_NITSE (db=UNIREF evalue=1.0e-62 bit_score=246.1 identity=42.8 coverage=94.02985074626866)
trpS: tryptophan--tRNA ligase (db=HMMTigr db_id=TIGR00233 from=2 to=333 evalue=3.2e-98 interpro_id=IPR002306 interpro_description=Tryptophanyl-tRNA synthetase GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tryptophan-tRNA ligase activity (GO:0004830), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436))
TRYPTOPHANYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR10055 from=9 to=332 evalue=2.8e-81 interpro_id=IPR002306 interpro_description=Tryptophanyl-tRNA synthetase GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tryptophan-tRNA ligase activity (GO:0004830), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436))
AMDSBA3_30_11
unknown

Not on your lists

9895..10140
DNA (246bp) protein (82aa)
9895..10140 + ( gc_cont=0.577)
AMDSBA3_30_12
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10362..10805
DNA (444bp) protein (148aa)
excisionase family DNA binding domain-containing protein
Putative uncharacterized protein n=1 Tax=Olsenella sp. oral taxon 809 str. F0356 RepID=G5F619_9ACTN (db=UNIREF evalue=4.2e-08 bit_score=63.5 identity=37.0 coverage=64.1891891891892)
seg (db=Seg db_id=seg from=40 to=54)
seg (db=Seg db_id=seg from=122 to=132)
AMDSBA3_30_13
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10809..11396
DNA (588bp) protein (196aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZII0_NODSP (db=UNIREF evalue=3.0e-14 bit_score=84.3 identity=33.1 coverage=83.16326530612244)
PIN domain-like (db=superfamily db_id=SSF88723 from=1 to=117 evalue=3.6e-07)
hypothetical protein NestF_06511 n=1 Tax=Nesterenkonia sp. F RepID=UPI000255CA10
AMDSBA3_30_14
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

12384..12986
DNA (603bp) protein (201aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=175 to=187)
seg (db=Seg db_id=seg from=140 to=156)
seg (db=Seg db_id=seg from=109 to=127)
AMDSBA3_30_15
unknown

Not on your lists

comp(13075..13323)
DNA (249bp) protein (83aa)
seg (db=Seg db_id=seg from=10 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
AMDSBA3_30_16
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(13304..13984)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EGE1_9BACT (db=UNIREF evalue=1.9e-07 bit_score=62.0 identity=33.6 coverage=45.81497797356828)
seg (db=Seg db_id=seg from=124 to=136)
seg (db=Seg db_id=seg from=98 to=112)
seg (db=Seg db_id=seg from=6 to=15)
AMDSBA3_30_17
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(14010..15869)
DNA (1860bp) protein (620aa)
EmrB/QacA subfamily drug resistance transporter
Permease, major facilitator superfamily n=3 Tax=Thermococcus RepID=C5A763_THEGJ (db=UNIREF evalue=4.4e-43 bit_score=181.8 identity=27.8 coverage=69.83870967741936)
transmembrane_regions (db=TMHMM db_id=tmhmm from=390 to=412)
transmembrane_regions (db=TMHMM db_id=tmhmm from=356 to=375)
AMDSBA3_30_18
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(15856..16329)
DNA (474bp) protein (158aa)
HTH_MARR_1 (db=PatternScan db_id=PS01117 from=68 to=103 evalue=0.0 interpro_id=IPR023187 interpro_description=Transcriptional regulator MarR-type, conserved site)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=6 to=142 evalue=8.1e-22)
no description (db=HMMSmart db_id=SM00347 from=30 to=129 evalue=6.3e-13 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=37 to=110 evalue=7.5e-11 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA3_30_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16414..16992)
DNA (579bp) protein (193aa)
Abortive infection protein
Abortive infection protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUU9_9FIRM (db=UNIREF evalue=4.1e-48 bit_score=196.8 identity=53.2 coverage=95.85492227979275)
seg (db=Seg db_id=seg from=171 to=188)
seg (db=Seg db_id=seg from=7 to=21)
AMDSBA3_30_20
Geobacillus caldoxylosilyticus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17375..18505
DNA (1131bp) protein (377aa)
transposase
ISSoc9, transposase n=3 Tax=Neisseriaceae RepID=D6L1C7_9NEIS (db=UNIREF evalue=1.6e-11 bit_score=76.3 identity=23.5 coverage=95.49071618037135)
(db=HMMPfam db_id=PF07282 from=290 to=359 evalue=8.1e-18 interpro_id=IPR010095 interpro_description=Transposase IS605, OrfB, C-terminal)
(db=HMMPfam db_id=PF01385 from=146 to=259 evalue=8.7e-16 interpro_id=IPR001959 interpro_description=Transposase, probable, IS891/IS1136/IS1341)
AMDSBA3_30_21
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18738..20066)
DNA (1329bp) protein (443aa)
major facilitator superfamily protein
Major facilitator superfamily MFS_1 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRB5_9FIRM (db=UNIREF evalue=1.4e-06 bit_score=60.1 identity=25.1 coverage=84.42437923250564)
transmembrane_regions (db=TMHMM db_id=tmhmm from=314 to=336)
transmembrane_regions (db=TMHMM db_id=tmhmm from=340 to=359)
AMDSBA3_30_22
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20329..21087)
DNA (759bp) protein (253aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Thiomonas RepID=D5WYL2_THIK1 (db=UNIREF evalue=1.8e-11 bit_score=75.5 identity=27.6 coverage=91.699604743083)
seg (db=Seg db_id=seg from=156 to=169)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=3 to=248 evalue=1.2e-66)
AMDSBA3_30_23
unknown

Not on your lists

comp(21369..21743)
DNA (375bp) protein (125aa)
seg (db=Seg db_id=seg from=90 to=110)
seg (db=Seg db_id=seg from=39 to=55)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=28)
AMDSBA3_30_24
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22124..23047)
DNA (924bp) protein (308aa)
hmgL; pyruvate carboxyltransferase
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V7M2_9RHOB (db=UNIREF evalue=4.1e-50 bit_score=204.1 identity=41.9 coverage=88.31168831168831)
AIPM_HOMOCIT_SYNTH_1 (db=PatternScan db_id=PS00815 from=16 to=32 evalue=0.0 interpro_id=IPR002034 interpro_description=Alpha-isopropylmalate/homocitrate synthase, conserved site GO=Biological Process: carboxylic acid metabolic process (GO:0019752), Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer (GO:0046912))
Aldolase (db=superfamily db_id=SSF51569 from=6 to=297 evalue=1.7e-53)
AMDSBA3_30_25
Planomicrobium sp. ES2, Planomicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23065..24288)
DNA (1224bp) protein (408aa)
formyl-CoA transferase (EC:2.8.3.16)
formyl-CoA transferase (EC:2.8.3.16)
Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKM0_BACSK (db=UNIREF evalue=4.0e-117 bit_score=427.2 identity=54.3 coverage=96.07843137254902)
seg (db=Seg db_id=seg from=388 to=401)
AMDSBA3_30_26
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24288..25331)
DNA (1044bp) protein (348aa)
gentisate 1,2-dioxygenase
Cupin 2 conserved barrel domain protein n=1 Tax=Bacillus coagulans 36D1 RepID=G2TJ12_BACCO (db=UNIREF evalue=1.1e-62 bit_score=246.1 identity=35.7 coverage=99.13793103448276)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=60 to=332 evalue=3.5e-39 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
(db=HMMPfam db_id=PF07883 from=90 to=157 evalue=2.9e-18 interpro_id=IPR013096 interpro_description=Cupin 2, conserved barrel)
AMDSBA3_30_27
Geobacillus sp. Y4.1MC1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25506..26870)
DNA (1365bp) protein (455aa)
AMP-dependent synthetase and ligase
AMP-binding enzyme family protein n=1 Tax=Trichomonas vaginalis RepID=A2ELA0_TRIVA (db=UNIREF evalue=2.2e-07 bit_score=62.8 identity=31.0 coverage=30.32967032967033)
seg (db=Seg db_id=seg from=36 to=48)
AMP_BINDING (db=PatternScan db_id=PS00455 from=160 to=171 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
AMDSBA3_30_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26929..27816)
DNA (888bp) protein (296aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconateDelta-isomerase n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=D5UH11_CELFN (db=UNIREF evalue=9.4e-52 bit_score=209.5 identity=42.3 coverage=91.55405405405406)
FAH (db=superfamily db_id=SSF56529 from=61 to=283 evalue=1.2e-58 interpro_id=IPR011234 interpro_description=Fumarylacetoacetase, C-terminal-related GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
no description (db=Gene3D db_id=G3DSA:3.90.850.10 from=69 to=278 evalue=1.7e-58 interpro_id=IPR011234 interpro_description=Fumarylacetoacetase, C-terminal-related GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA3_30_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27813..28613)
DNA (801bp) protein (267aa)
Enoyl-CoA hydratase/isomerase
2-ketocyclohexanecarboxyl-CoA hydrolase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HSW9_9ACTO (db=UNIREF evalue=1.9e-19 bit_score=102.1 identity=31.4 coverage=86.51685393258427)
ENOYL_COA_HYDRATASE (db=PatternScan db_id=PS00166 from=102 to=122 evalue=0.0 interpro_id=IPR018376 interpro_description=Enoyl-CoA hydratase/isomerase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ClpP/crotonase (db=superfamily db_id=SSF52096 from=1 to=262 evalue=1.9e-77)
AMDSBA3_30_30
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28652..29404)
DNA (753bp) protein (251aa)
short-chain dehydrogenase/reductase SDR
Short chain dehydrogenase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AEZ7_9ACTN (db=UNIREF evalue=9.2e-32 bit_score=142.9 identity=33.6 coverage=95.61752988047809)
seg (db=Seg db_id=seg from=11 to=30)
ADH_SHORT (db=PatternScan db_id=PS00061 from=140 to=168 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
Displaying items 1-30 of 44 in total

View Taxonomy