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This organism can only be binned in the context of its binning project SR-VP_26_10_2019_2_100cm. Please contact the project owner (crits-christoph@berkeley.edu) to become a member and gain access.

AMDSBA3_26_47

Organism: S._acidophilus_IM3

near complete RP 45 / 55 MC: 1 BSCG 50 / 51 ASCG 0 / 38
Location: comp(44224..44532)

Top 3 Functional Annotations

Value Algorithm Source
transposon IS605 OrfB similarity KEGG
DB: KEGG
  • Identity: 55.8
  • Coverage: 86.0
  • Bit_score: 95
  • Evalue 1.10e-17
Transposon IS605 OrfB n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZ17_METI4 (db=UNIREF evalue=1.2e-17 bit_score=94.7 identity=55.8 coverage=82.52427184466019) similarity UNIREF
DB: UNIREF
  • Identity: 55.8
  • Coverage: 82.52
  • Bit_score: 94
  • Evalue 1.20e-17
(db=HMMPfam db_id=PF01385 from=45 to=89 evalue=8.9e-06 interpro_id=IPR001959 interpro_description=Transposase, probable, IS891/IS1136/IS1341) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 8.90e-06

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Taxonomy

Methylacidiphilum infernorum → Methylacidiphilum → Methylacidiphilales → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 309
ATGGGGCCGAACGCCCATCGGCGGGCTTTGCGCTGCCTAAAAATTCGGCAACGACGCCTCACCCGGAAAATGCAAGCCGCTAAAGTCTCGATGGGTTTGGCTCTGCACGATCCGCTCCCGAAAGGGACACGGTTGCCGCGCAGCCGTAATTGGAATAAAGTTCAAAGGGCTATAGCCCGCACCCATCTGCGGGTCGCCAACATACGCCAAGATTTCTTGCACAAGACATCGCCCCGGCTCTGTCGTGAAAACCAAGCGATCGGGATGAGACATTATCCGTGCACGGAATGTTGGCGAATCGTCATTTAG
PROTEIN sequence
Length: 103
MGPNAHRRALRCLKIRQRRLTRKMQAAKVSMGLALHDPLPKGTRLPRSRNWNKVQRAIARTHLRVANIRQDFLHKTSPRLCRENQAIGMRHYPCTECWRIVI*