ggKbase home page

AMDSBA3_26

Alias: AMDSBA3_C25

Search features with annotation key words

Displaying items 1-30 of 47 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_26_1
unknown

Not on your lists

3..86
DNA (84bp) protein (28aa)
3..86 + ( gc_cont=0.595)
AMDSBA3_26_2
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

123..341
DNA (219bp) protein (73aa)
spoVS; stage V sporulation protein S
Stage V sporulation protein S n=138 Tax=Firmicutes RepID=SP5S_BACSU (db=UNIREF evalue=2.7e-16 bit_score=89.7 identity=55.6 coverage=97.26027397260275)
(db=HMMPfam db_id=PF04232 from=1 to=72 evalue=1.5e-30 interpro_id=IPR007347 interpro_description=Sporulation stage V, protein S)
Q67PF4_SYMTH_Q67PF4; (db=BlastProDom db_id=PD061837 from=1 to=72 evalue=2.0e-21 interpro_id=IPR007347 interpro_description=Sporulation stage V, protein S)
AMDSBA3_26_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

393..3794
DNA (3402bp) protein (1134aa)
condensin subunit Smc
condensin subunit Smc
Chromosome segregation protein SMC n=2 Tax=Beggiatoa RepID=A7BND1_9GAMM (db=UNIREF evalue=7.3e-28 bit_score=132.1 identity=35.8 coverage=16.75485008818342)
coiled-coil (db=Coil db_id=coil from=208 to=229 evalue=NA)
AMDSBA3_26_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3829..4764
DNA (936bp) protein (312aa)
ftsY; signal recognition particle-docking protein FtsY rbh
signal recognition particle-docking protein FtsY n=1 Tax=Sporolactobacillus inulinus CASD RepID=UPI000255C666 (db=UNIREF evalue=3.2e-74 bit_score=284.3 identity=47.4 coverage=95.1923076923077)
seg (db=Seg db_id=seg from=34 to=49)
SRP54 (db=PatternScan db_id=PS00300 from=276 to=289 evalue=0.0 interpro_id=IPR000897 interpro_description=Signal recognition particle, SRP54 subunit, GTPase GO=Molecular Function: GTP binding (GO:0005525), Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614))
AMDSBA3_26_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4831..5922)
DNA (1092bp) protein (364aa)
Spore germination protein
Spore germination protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZU0_9FIRM (db=UNIREF evalue=1.2e-45 bit_score=189.5 identity=32.2 coverage=99.17582417582418)
seg (db=Seg db_id=seg from=138 to=147)
seg (db=Seg db_id=seg from=78 to=88)
AMDSBA3_26_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5974..7083)
DNA (1110bp) protein (370aa)
seg (db=Seg db_id=seg from=8 to=16)
seg (db=Seg db_id=seg from=52 to=70)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
spore germination B3 GerAC family protein
AMDSBA3_26_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7080..8840)
DNA (1761bp) protein (587aa)
gerKA; GerA spore germination protein
GerA spore germination protein n=1 Tax=Paenibacillus vortex V453 RepID=E5YWX8_9BACL (db=UNIREF evalue=5.2e-78 bit_score=297.7 identity=34.9 coverage=77.8534923339012)
seg (db=Seg db_id=seg from=506 to=520)
seg (db=Seg db_id=seg from=439 to=455)
AMDSBA3_26_8
unknown

Not on your lists

8986..9126
DNA (141bp) protein (47aa)
8986..9126 + ( gc_cont=0.447)
AMDSBA3_26_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9627..10850
DNA (1224bp) protein (408aa)
group 1 glycosyl transferase
D-inositol 3-phosphate glycosyltransferase 2 n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=MSHA2_CATAD (db=UNIREF evalue=3.9e-24 bit_score=118.2 identity=30.1 coverage=83.08823529411765)
seg (db=Seg db_id=seg from=318 to=329)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=4 to=395 evalue=1.3e-46)
AMDSBA3_26_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10819..11562
DNA (744bp) protein (248aa)
Sucrose-6F-phosphate phosphohydrolase n=2 Tax=Sulfobacillus acidophilus RepID=G8TVG8_9FIRM (db=UNIREF evalue=9.6e-82 bit_score=308.9 identity=62.0 coverage=96.7741935483871)
sucrose-6F-phosphate phosphohydrolase
sucrose-6F-phosphate phosphohydrolase
AMDSBA3_26_11
unknown

Not on your lists

11679..12017
DNA (339bp) protein (113aa)
11679..12017 + ( gc_cont=0.575)
AMDSBA3_26_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12133..12492
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=101 to=114)
coiled-coil (db=Coil db_id=coil from=49 to=77 evalue=NA)
(db=HMMPfam db_id=PF04297 from=6 to=85 evalue=8.1e-24 interpro_id=IPR007394 interpro_description=Putative helix-turn-helix protein, YlxM/p13-like)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=4 to=110 evalue=1.3e-23 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA3_26_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12485..13822
DNA (1338bp) protein (446aa)
signal recognition particle subunit FFH/SRP54 (srp54)
signal recognition particle subunit FFH/SRP54 (srp54)
Signal recognition particle subunit FFH/SRP54 (Srp54) n=2 Tax=Sulfobacillus acidophilus RepID=G8TVG6_9FIRM (db=UNIREF evalue=1.3e-190 bit_score=671.4 identity=76.6 coverage=99.32735426008968)
AMDSBA3_26_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13840..14130
DNA (291bp) protein (97aa)
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEI6_9ACTN (db=UNIREF evalue=8.5e-18 bit_score=95.1 identity=58.9 coverage=74.22680412371135)
30S RIBOSOMAL PROTEIN S16 (db=HMMPanther db_id=PTHR12919 from=1 to=83 evalue=3.2e-43 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S16 (db=HMMPanther db_id=PTHR12919:SF4 from=1 to=83 evalue=3.2e-43)
AMDSBA3_26_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14120..14665
DNA (546bp) protein (182aa)
rimM; 16S rRNA processing protein RimM
Ribosome maturation factor RimM n=1 Tax=Sphingopyxis alaskensis RB2256 RepID=RIMM_SPHAL (db=UNIREF evalue=1.1e-07 bit_score=62.4 identity=31.5 coverage=76.92307692307693)
16S_RimM: 16S rRNA processing protein RimM (db=HMMTigr db_id=TIGR02273 from=12 to=176 evalue=9.2e-39 interpro_id=IPR011961 interpro_description=16S rRNA processing protein RimM GO=Cellular Component: ribosome (GO:0005840), Biological Process: rRNA processing (GO:0006364), Molecular Function: ribosome binding (GO:0043022))
PRC-barrel domain (db=superfamily db_id=SSF50346 from=104 to=176 evalue=9.1e-16 interpro_id=IPR011033 interpro_description=PRC-barrel-like)
AMDSBA3_26_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14665..15351
DNA (687bp) protein (229aa)
tRNA (Guanine37-N(1)-) methyltransferase
tRNA (guanine-N(1)-)-methyltransferase n=3 Tax=Porphyromonas RepID=E4KSN1_9PORP (db=UNIREF evalue=1.4e-42 bit_score=178.7 identity=42.5 coverage=97.81659388646288)
(db=HMMPfam db_id=PF01746 from=23 to=223 evalue=3.4e-41 interpro_id=IPR016009 interpro_description=tRNA (guanine-N1-)-methyltransferase)
tRNA-(m1G37) methyltransferase (db=HMMPIR db_id=PIRSF000386 from=1 to=228 evalue=1.2e-96 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
AMDSBA3_26_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15372..15713
DNA (342bp) protein (114aa)
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 n=20 Tax=Lactobacillus RepID=RL19_LACAC (db=UNIREF evalue=9.6e-29 bit_score=131.7 identity=54.4 coverage=98.24561403508771)
seg (db=Seg db_id=seg from=92 to=103)
RIBOSOMAL_L19 (db=PatternScan db_id=PS01015 from=85 to=100 evalue=0.0 interpro_id=IPR018257 interpro_description=Ribosomal protein L19, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA3_26_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15773..16291
DNA (519bp) protein (173aa)
signal peptidase I (EC:3.4.21.89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
SPASE_I_1 (db=PatternScan db_id=PS00501 from=39 to=46 evalue=0.0 interpro_id=IPR019756 interpro_description=Peptidase S26A, signal peptidase I, serine active site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
SPASE_I_2 (db=PatternScan db_id=PS00760 from=84 to=96 evalue=0.0 interpro_id=IPR019757 interpro_description=Peptidase S26A, signal peptidase I, lysine active site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
AMDSBA3_26_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16291..17052
DNA (762bp) protein (254aa)
Ribosome biogenesis GTPase A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKW2_9BACT (db=UNIREF evalue=1.6e-20 bit_score=105.5 identity=31.7 coverage=65.74803149606299)
Predicted GTPase, MG442 type (db=HMMPIR db_id=PIRSF006230 from=6 to=251 evalue=2.5e-48 interpro_id=IPR016478 interpro_description=GTPase, MTG1)
GTP-BINDING PROTEIN-RELATED (db=HMMPanther db_id=PTHR11089 from=32 to=250 evalue=4.0e-41)
GTP-BINDING PROTEIN-RELATED (db=HMMPanther db_id=PTHR11089:SF4 from=32 to=250 evalue=4.0e-41)
AMDSBA3_26_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17049..17666
DNA (618bp) protein (206aa)
RNase HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Meiothermus ruber DSM 1279 RepID=D3PML6_MEIRD (db=UNIREF evalue=1.6e-34 bit_score=151.8 identity=44.0 coverage=91.74757281553399)
seg (db=Seg db_id=seg from=140 to=150)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=10 to=198 evalue=7.8e-59 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
AMDSBA3_26_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17821..18489)
DNA (669bp) protein (223aa)
vicR; two component transcriptional regulator
Two component transcriptional regulator, winged helix family n=1 Tax=Planctomyces brasiliensis DSM 5305 RepID=F0SNU4_PLABD (db=UNIREF evalue=6.9e-47 bit_score=193.0 identity=47.6 coverage=98.65470852017937)
TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE REGULATOR (INTESTINAL BACTERIA - BACTEROIDES THETAIOTAOMICRON) (db=HMMPanther db_id=PTHR23283:SF21 from=1 to=121 evalue=1.8e-36)
seg (db=Seg db_id=seg from=152 to=163)
AMDSBA3_26_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18565..20907)
DNA (2343bp) protein (781aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan glycosyltransferase n=2 Tax=Sulfobacillus acidophilus RepID=G8TVF8_9FIRM (db=UNIREF evalue=6.0e-231 bit_score=806.2 identity=54.2 coverage=95.13444302176697)
seg (db=Seg db_id=seg from=515 to=526)
seg (db=Seg db_id=seg from=244 to=259)
AMDSBA3_26_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21112..21876)
DNA (765bp) protein (255aa)
peptidoglycan hydrolase
NLP/P60 protein n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GKX9_9FIRM (db=UNIREF evalue=4.8e-28 bit_score=130.6 identity=48.2 coverage=50.19607843137255)
seg (db=Seg db_id=seg from=7 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
AMDSBA3_26_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22732..23199
DNA (468bp) protein (156aa)
heat shock protein Hsp20
Heat shock protein Hsp20 n=2 Tax=Sulfobacillus acidophilus RepID=G8U062_9FIRM (db=UNIREF evalue=3.1e-54 bit_score=216.9 identity=65.8 coverage=98.71794871794873)
seg (db=Seg db_id=seg from=28 to=40)
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY (db=HMMPanther db_id=PTHR11527 from=2 to=153 evalue=9.7e-32)
AMDSBA3_26_25
unknown

Not on your lists

23199..23612
DNA (414bp) protein (138aa)
seg (db=Seg db_id=seg from=58 to=67)
AMDSBA3_26_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23569..25665
DNA (2097bp) protein (699aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=111 Tax=Campylobacter RepID=TOP1_CAMJE (db=UNIREF evalue=1.7e-155 bit_score=555.4 identity=42.8 coverage=99.14163090128756)
seg (db=Seg db_id=seg from=306 to=317)
AMDSBA3_26_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25928..26812
DNA (885bp) protein (295aa)
xerC; tyrosine recombinase XerC
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=103 to=292 evalue=1.4e-57 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=108 to=288 evalue=1.9e-50 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
(db=HMMPfam db_id=PF00589 from=108 to=281 evalue=1.1e-40 interpro_id=IPR002104 interpro_description=Integrase, catalytic GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBA3_26_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26836..27378
DNA (543bp) protein (181aa)
hslV; 20S proteasome subunits A and B
ATP-dependent protease hslV n=1 Tax=Desulfotomaculum kuznetsovii DSM 6115 RepID=F6CIQ3_DESK7 (db=UNIREF evalue=2.7e-57 bit_score=227.3 identity=64.2 coverage=96.13259668508287)
N-terminal nucleophile aminohydrolases (Ntn hydrolases) (db=superfamily db_id=SSF56235 from=7 to=180 evalue=2.4e-47)
ATP_dep_HslV: ATP-dependent protease Hsl (db=HMMTigr db_id=TIGR03692 from=7 to=179 evalue=5.0e-111 interpro_id=IPR022281 interpro_description=ATP-dependent protease, HslV subunit GO=Molecular Function: threonine-type endopeptidase activity (GO:0004298), Biological Process: proteolysis (GO:0006508), Cellular Component: HslUV protease complex (GO:0009376))
AMDSBA3_26_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27410..28825
DNA (1416bp) protein (472aa)
hslU; heat shock protein HslVU, ATPase subunit HslU
hslU; heat shock protein HslVU, ATPase subunit HslU
ATP-dependent protease ATPase subunit HslU n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=HSLU_AZOC5 (db=UNIREF evalue=4.3e-115 bit_score=420.6 identity=50.0 coverage=91.94915254237289)
AMDSBA3_26_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28920..29702
DNA (783bp) protein (261aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=2 Tax=Sulfobacillus acidophilus RepID=G8TVE7_9FIRM (db=UNIREF evalue=2.6e-130 bit_score=470.3 identity=90.8 coverage=99.23371647509579)
GTP-sensing pleiotropic transcriptional repressor CodY
GTP-sensing pleiotropic transcriptional repressor CodY
Displaying items 1-30 of 47 in total

View Taxonomy