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AMDSBA4_2

Alias: AMDSBA4_C1

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Displaying items 1-30 of 146 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_2_1
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..452)
DNA (450bp) protein (150aa)
hypothetical protein
Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IAP4_9CLOT (db=UNIREF evalue=6.1e-15 bit_score=86.3 identity=39.0 coverage=74.0)
seg (db=Seg db_id=seg from=134 to=147)
hypothetical protein Tax=RBG_16_Gamma2_60_9_curated
AMDSBA4_2_2
RIFOXYA1_FULL_Paenibacillus_44_5_curated, Firmicutes, Bacteria

Not on your lists

comp(666..1253)
DNA (588bp) protein (196aa)
phosphatase
HAD-superfamily hydrolase, subfamily IA, variant 3 n=2 Tax=Sulfobacillus acidophilus RepID=G8TYZ5_9FIRM (db=UNIREF evalue=3.0e-22 bit_score=110.9 identity=34.0 coverage=95.91836734693877)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=193 evalue=6.6e-33 interpro_id=IPR023214 interpro_description=HAD-like domain)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=60 to=169 evalue=1.2e-23 interpro_id=IPR023214 interpro_description=HAD-like domain)
AMDSBA4_2_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1311..2738)
DNA (1428bp) protein (476aa)
D-lactate dehydrogenase (EC:1.1.2.4)
D-lactate dehydrogenase (EC:1.1.2.4)
Glycolate oxidase, subunit GlcD n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MNA0_9BACT (db=UNIREF evalue=4.5e-112 bit_score=410.6 identity=46.3 coverage=95.7983193277311)
AMDSBA4_2_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2725..3942)
DNA (1218bp) protein (406aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis JAM81 RepID=F4PFC9_BATDJ (db=UNIREF evalue=5.1e-72 bit_score=277.3 identity=39.5 coverage=96.79802955665025)
seg (db=Seg db_id=seg from=95 to=112)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=6 to=17 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA4_2_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3935..4957)
DNA (1023bp) protein (341aa)
glcE; glycolate oxidase FAD binding subunit
Putative uncharacterized protein n=1 Tax=Neisseria elongata subsp. glycolytica ATCC 29315 RepID=D4DR59_NEIEG (db=UNIREF evalue=1.9e-16 bit_score=92.4 identity=38.9 coverage=41.05571847507331)
FAD-binding domain (db=superfamily db_id=SSF56176 from=52 to=167 evalue=9.5e-18 interpro_id=IPR016166 interpro_description=FAD-binding, type 2 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
GLYCOLATE OXIDASE SUBUNIT GLCE (db=HMMPanther db_id=PTHR11748:SF1 from=52 to=174 evalue=2.9e-16)
AMDSBA4_2_6
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4983..5942)
DNA (960bp) protein (320aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W018_9GAMM (db=UNIREF evalue=3.9e-51 bit_score=207.6 identity=41.5 coverage=91.5625)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
transmembrane_regions (db=TMHMM db_id=tmhmm from=154 to=173)
AMDSBA4_2_7
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

comp(5958..6800)
DNA (843bp) protein (281aa)
histidinol phosphate phosphatase HisJ family
PHP domain protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PMZ5_9EURY (db=UNIREF evalue=4.1e-12 bit_score=77.8 identity=26.4 coverage=81.85053380782918)
PHP domain-like (db=superfamily db_id=SSF89550 from=7 to=279 evalue=2.2e-34 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
hisJ_fam: histidinol phosphate phosphatase H (db=HMMTigr db_id=TIGR01856 from=9 to=256 evalue=3.8e-27 interpro_id=IPR010140 interpro_description=Histidinol phosphate phosphatase, HisJ GO=Biological Process: histidine biosynthetic process (GO:0000105), Molecular Function: histidinol-phosphatase activity (GO:0004401))
AMDSBA4_2_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6812..7594)
DNA (783bp) protein (261aa)
ctaG; hypothetical protein
Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C5Y0_9PLAN (db=UNIREF evalue=1.9e-11 bit_score=75.5 identity=25.5 coverage=93.86973180076629)
transmembrane_regions (db=TMHMM db_id=tmhmm from=229 to=251)
transmembrane_regions (db=TMHMM db_id=tmhmm from=184 to=202)
AMDSBA4_2_9
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7692..8918)
DNA (1227bp) protein (409aa)
D-alanyl-D-alanine carboxypeptidase DacC n=4 Tax=Neisseria RepID=C5TJQ4_NEIFL (db=UNIREF evalue=4.1e-13 bit_score=81.6 identity=26.0 coverage=92.42053789731052)
seg (db=Seg db_id=seg from=371 to=390)
seg (db=Seg db_id=seg from=7 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA4_2_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9112..10329)
DNA (1218bp) protein (406aa)
integral membrane protein-like protein
Integral membrane protein-like protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H6P7_ANADF (db=UNIREF evalue=4.8e-38 bit_score=164.5 identity=31.8 coverage=90.14778325123153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=297 to=319)
transmembrane_regions (db=TMHMM db_id=tmhmm from=256 to=278)
AMDSBA4_2_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10658..12133
DNA (1476bp) protein (492aa)
GerA spore germination protein rbh
GerA spore germination protein rbh
GerA spore germination protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZS8_9FIRM (db=UNIREF evalue=1.2e-157 bit_score=562.0 identity=58.9 coverage=97.5609756097561)
transmembrane_regions (db=TMHMM db_id=tmhmm from=424 to=446)
AMDSBA4_2_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12130..13209
DNA (1080bp) protein (360aa)
Spore germination protein rbh
Spore germination protein n=1 Tax=Thermobacillus composti KWC4 RepID=G4E9W1_9BACL (db=UNIREF evalue=1.6e-13 bit_score=82.8 identity=24.7 coverage=94.44444444444444)
transmembrane_regions (db=TMHMM db_id=tmhmm from=141 to=160)
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=197)
AMDSBA4_2_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13202..14353
DNA (1152bp) protein (384aa)
hypothetical protein rbh
hypothetical protein rbh
Germination protein, Ger(X)C family n=2 Tax=Sulfobacillus acidophilus RepID=F8I8J2_SULAT (db=UNIREF evalue=1.5e-89 bit_score=335.5 identity=46.0 coverage=93.75)
AMDSBA4_2_14
unknown

Not on your lists

comp(14364..14723)
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=44 to=52)
AMDSBA4_2_15
unknown

Not on your lists

comp(14720..14998)
DNA (279bp) protein (93aa)
(db=HMMPfam db_id=PF04255 from=27 to=76 evalue=1.3e-08 interpro_id=IPR007367 interpro_description=Protein of unknown function DUF433)
Homeodomain-like (db=superfamily db_id=SSF46689 from=23 to=90 evalue=1.1e-07 interpro_id=IPR009057 interpro_description=Homeodomain-like GO=Molecular Function: protein binding (GO:0005515))
AMDSBA4_2_16
Brevibacillus sp. CF112, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14940..16379)
DNA (1440bp) protein (480aa)
amidase
Amidase n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B6P2_9RHOB (db=UNIREF evalue=1.0e-26 bit_score=127.1 identity=34.2 coverage=50.83333333333333)
seg (db=Seg db_id=seg from=157 to=178)
Amidase signature (AS) enzymes (db=superfamily db_id=SSF75304 from=1 to=474 evalue=1.9e-105 interpro_id=IPR023631 interpro_description=Amidase signature domain)
AMDSBA4_2_17
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16541..17497
DNA (957bp) protein (319aa)
thioredoxin reductase
thioredoxin reductase
Thioredoxin reductase n=19 Tax=Bacteroides RepID=A5ZGB8_9BACE (db=UNIREF evalue=2.0e-76 bit_score=291.6 identity=49.3 coverage=94.67084639498434)
PYRIDINE_REDOX_2 (db=PatternScan db_id=PS00573 from=134 to=154 evalue=0.0 interpro_id=IPR008255 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_2_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17594..17863
DNA (270bp) protein (90aa)
4Fe-4S ferredoxin
Ferredoxin II (FdII) n=2 Tax=Ralstonia RepID=D8NXH4_RALSL (db=UNIREF evalue=5.0e-12 bit_score=75.9 identity=44.7 coverage=81.11111111111111)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=51 to=62 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=2 to=89 evalue=2.1e-20)
AMDSBA4_2_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17932..18435)
DNA (504bp) protein (168aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUA3_9FIRM (db=UNIREF evalue=5.2e-47 bit_score=193.0 identity=62.8 coverage=95.23809523809523)
transmembrane_regions (db=TMHMM db_id=tmhmm from=124 to=146)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=112)
AMDSBA4_2_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18543..19547)
DNA (1005bp) protein (335aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Thioredoxin reductase n=1 Tax=Solibacillus silvestris StLB046 RepID=F2F6I2_SOLSS (db=UNIREF evalue=2.9e-41 bit_score=174.9 identity=32.8 coverage=94.02985074626866)
seg (db=Seg db_id=seg from=156 to=167)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=311 evalue=3.1e-42)
AMDSBA4_2_21
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19973..20935)
DNA (963bp) protein (321aa)
Membrane protease subunits, stomatin/prohibitin homologs
Membrane protease subunit, stomatin/prohibitin n=1 Tax=Mesotoga prima MesG1.Ag.4.2 RepID=I2F409_9THEM (db=UNIREF evalue=8.7e-43 bit_score=179.9 identity=31.9 coverage=91.27725856697819)
coiled-coil (db=Coil db_id=coil from=188 to=209 evalue=NA)
seg (db=Seg db_id=seg from=201 to=220)
AMDSBA4_2_22
unknown

Not on your lists

comp(20960..21178)
DNA (219bp) protein (73aa)
(db=HMMPfam db_id=PF01957 from=8 to=68 evalue=9.9e-06 interpro_id=IPR002810 interpro_description=Nodulation efficiency, NfeD)
AMDSBA4_2_23
Oceanobacillus picturae, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21529..23313)
DNA (1785bp) protein (595aa)
peptidase S9 prolyl oligopeptidase
peptidase S9 prolyl oligopeptidase
Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XX46_BRAFL (db=UNIREF evalue=1.6e-21 bit_score=110.2 identity=25.4 coverage=44.20168067226891)
seg (db=Seg db_id=seg from=279 to=297)
AMDSBA4_2_24
Bacillus sp. SG-1, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23343..24182)
DNA (840bp) protein (280aa)
hypothetical protein
seg (db=Seg db_id=seg from=143 to=158)
(db=HMMPfam db_id=PF10978 from=76 to=221 evalue=6.1e-23 interpro_id=IPR021247 interpro_description=Protein of unknown function DUF2785)
Uncharacterized protein {ECO:0000313|EMBL:EDL65926.1}; TaxID=161544 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. SG-1.;"
AMDSBA4_2_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24333..25661)
DNA (1329bp) protein (443aa)
Major facilitator superfamily MFS_1 n=2 Tax=Sulfobacillus acidophilus RepID=G8TWM7_9FIRM (db=UNIREF evalue=5.7e-170 bit_score=602.8 identity=69.6 coverage=97.74266365688487)
major facilitator superfamily protein rbh
major facilitator superfamily protein rbh
seg (db=Seg db_id=seg from=253 to=266)
AMDSBA4_2_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25680..26579)
DNA (900bp) protein (300aa)
cyoE; heme O synthase
Protoheme IX farnesyltransferase 1 n=2 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=COXX1_SACEN (db=UNIREF evalue=1.2e-57 bit_score=229.2 identity=46.3 coverage=93.33333333333333)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=278 to=297)
AMDSBA4_2_27
unknown

Not on your lists

26957..27310
DNA (354bp) protein (118aa)
seg (db=Seg db_id=seg from=14 to=31)
seg (db=Seg db_id=seg from=95 to=105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=66)
AMDSBA4_2_28
RBG_19FT_COMBO_Euryarchaeota_56_21_curated, Euryarchaeota, Archaea

Not on your lists

comp(27350..27754)
DNA (405bp) protein (135aa)
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY (db=HMMPanther db_id=PTHR11527 from=19 to=134 evalue=5.3e-11)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=9 to=121 evalue=1.9e-22 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
(db=HMMPfam db_id=PF00011 from=23 to=118 evalue=3.1e-17 interpro_id=IPR002068 interpro_description=Heat shock protein Hsp20)
no description (db=Gene3D db_id=G3DSA:2.60.40.790 from=3 to=124 evalue=2.2e-15)
AMDSBA4_2_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28193..28777)
DNA (585bp) protein (195aa)
Tetracyclin repressor-like, C-terminal domain (db=superfamily db_id=SSF48498 from=77 to=191 evalue=3.2e-18 interpro_id=IPR011075 interpro_description=Tetracycline transcriptional regulator, TetR-related, C-terminal)
Homeodomain-like (db=superfamily db_id=SSF46689 from=3 to=74 evalue=7.1e-17 interpro_id=IPR009057 interpro_description=Homeodomain-like GO=Molecular Function: protein binding (GO:0005515))
(db=HMMPfam db_id=PF00440 from=10 to=56 evalue=2.4e-16 interpro_id=IPR001647 interpro_description=DNA-binding HTH domain, TetR-type GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.357.10 from=49 to=185 evalue=7.1e-15 interpro_id=IPR015893 interpro_description=Tetracycline transcriptional regulator, TetR-like, C-terminal GO=Molecular Function: DNA binding (GO:0003677))
AMDSBA4_2_30
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(28855..30012)
DNA (1158bp) protein (386aa)
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21)
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21)
Phosphoribosylaminoimidazole carboxylase n=8 Tax=Lactobacillus reuteri RepID=C0Z011_LACRE (db=UNIREF evalue=2.5e-76 bit_score=291.6 identity=44.3 coverage=91.19170984455958)
seg (db=Seg db_id=seg from=364 to=382)
Displaying items 1-30 of 146 in total

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