ggKbase home page

AMDSBA4_8

Alias: AMDSBA4_C7

Search features with annotation key words

Displaying items 1-30 of 121 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_8_1
unknown

Not on your lists

1084..1260
DNA (177bp) protein (59aa)
1084..1260 + ( gc_cont=0.486)
AMDSBA4_8_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(1419..2315)
DNA (897bp) protein (299aa)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=3 to=250 evalue=1.6e-49)
(db=HMMPfam db_id=PF05368 from=8 to=246 evalue=8.3e-38 interpro_id=IPR008030 interpro_description=NmrA-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=1 to=222 evalue=1.0e-37 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
UNCHARACTERIZED (db=HMMPanther db_id=PTHR14194:SF5 from=40 to=246 evalue=8.7e-30)
AMDSBA4_8_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2312..2785)
DNA (474bp) protein (158aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U162_9FIRM (db=UNIREF evalue=4.6e-29 bit_score=133.3 identity=43.9 coverage=94.9367088607595)
seg (db=Seg db_id=seg from=58 to=75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
AMDSBA4_8_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3252..3527)
DNA (276bp) protein (92aa)
3252..3527 - ( gc_cont=0.536)
transposase IS3/IS911 family protein
Uncharacterized protein {ECO:0000313|EMBL:AEW04746.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Putative transposase n=1 Tax=Sulfobacillus acidophilus (strain TPY) RepID=F8IAR8_SULAT
AMDSBA4_8_5
RLO_PLX_64_10, Bacteria

Not on your lists

4030..4377
DNA (348bp) protein (116aa)
DNA polymerase subunit beta
DNA polymerase, beta domain protein region n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GET6_GEOUR (db=UNIREF evalue=4.3e-08 bit_score=63.2 identity=38.8 coverage=84.48275862068965)
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=5 to=105 evalue=4.1e-16)
(db=HMMPfam db_id=PF01909 from=13 to=97 evalue=1.1e-09 interpro_id=IPR002934 interpro_description=Nucleotidyl transferase domain GO=Molecular Function: nucleotidyltransferase activity (GO:0016779))
AMDSBA4_8_6
unknown

Not on your lists

5106..5702
DNA (597bp) protein (199aa)
seg (db=Seg db_id=seg from=110 to=124)
AMDSBA4_8_7
unknown

Not on your lists

5674..6012
DNA (339bp) protein (113aa)
coiled-coil (db=Coil db_id=coil from=31 to=52 evalue=NA)
coiled-coil (db=Coil db_id=coil from=89 to=110 evalue=NA)
AMDSBA4_8_8
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8013..9119
DNA (1107bp) protein (369aa)
ATPase rbh
ATPase rbh
ATPase n=1 Tax=Syntrophothermus lipocalidus DSM 12680 RepID=D7CK92_SYNLT (db=UNIREF evalue=1.1e-81 bit_score=309.3 identity=42.4 coverage=98.91598915989161)
AMDSBA4_8_9
Brevibacillus sp. BC25, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9574..10305
DNA (732bp) protein (244aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZE40_BREBN (db=UNIREF evalue=1.7e-59 bit_score=235.0 identity=49.6 coverage=95.49180327868852)
seg (db=Seg db_id=seg from=80 to=92)
ComB-like (db=superfamily db_id=SSF142823 from=9 to=239 evalue=4.2e-42 interpro_id=IPR005238 interpro_description=2-phosphosulpholactate phosphatase GO=Molecular Function: magnesium ion binding (GO:0000287), Biological Process: coenzyme M biosynthetic process (GO:0019295), Molecular Function: 2-phosphosulfolactate phosphatase activity (GO:0050532))
AMDSBA4_8_10
Sporolactobacillus laevolacticus, Sporolactobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10954..11331)
DNA (378bp) protein (126aa)
Carboxymuconolactone decarboxylase
Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CP75_9BACI (db=UNIREF evalue=3.7e-13 bit_score=80.1 identity=32.0 coverage=92.06349206349206)
AhpD-like (db=superfamily db_id=SSF69118 from=7 to=121 evalue=4.4e-29)
(db=HMMPfam db_id=PF02627 from=34 to=117 evalue=2.3e-22 interpro_id=IPR003779 interpro_description=Carboxymuconolactone decarboxylase GO=Molecular Function: peroxiredoxin activity (GO:0051920), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_8_11
unknown

Not on your lists

comp(11397..11735)
DNA (339bp) protein (113aa)
(db=HMMPfam db_id=PF01796 from=41 to=96 evalue=5.0e-10 interpro_id=IPR002878 interpro_description=Domain of unknown function DUF35, OB-fold, C-terminal)
AMDSBA4_8_12
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11788..12951)
DNA (1164bp) protein (388aa)
hypothetical protein
Putative thiolase, C-terminal domain protein n=6 Tax=environmental samples RepID=B3T4Y3_9ARCH (db=UNIREF evalue=1.2e-73 bit_score=282.7 identity=41.0 coverage=97.9381443298969)
seg (db=Seg db_id=seg from=26 to=37)
B_KETOACYL_SYNTHASE (db=PatternScan db_id=PS00606 from=76 to=92 evalue=0.0 interpro_id=IPR018201 interpro_description=Beta-ketoacyl synthase, active site)
AMDSBA4_8_13
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13007..14584)
DNA (1578bp) protein (526aa)
AMP-dependent synthetase/ligase rbh
AMP-dependent synthetase/ligase rbh
AMP-dependent synthetase and ligase n=1 Tax=Frankia sp. CcI3 RepID=Q2JAS9_FRASC (db=UNIREF evalue=6.6e-149 bit_score=533.1 identity=53.5 coverage=97.33840304182509)
AMDSBA4_8_14
Psychrobacter arcticus, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14615..15436)
DNA (822bp) protein (274aa)
hypothetical protein (db=KEGG evalue=5.0e-07 bit_score=60.5 identity=25.9 coverage=81.02189781021897)
seg (db=Seg db_id=seg from=78 to=88)
Uncharacterized protein n=1 Tax=Psychrobacter arcticus (strain DSM 17307 / 273-4) RepID=Q4FRR3_PSYA2
AMDSBA4_8_15
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15429..17684)
DNA (2256bp) protein (752aa)
hydantoinase B/oxoprolinase
hydantoinase B/oxoprolinase
Subunit of acetophenone carboxylase n=1 Tax=Azoarcus sp. KH32C RepID=H0PWC0_9RHOO (db=UNIREF evalue=2.6e-271 bit_score=940.3 identity=61.4 coverage=97.07446808510637)
AMDSBA4_8_16
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17727..19850)
DNA (2124bp) protein (708aa)
5-oxoprolinase (EC:3.5.2.9)
5-oxoprolinase (EC:3.5.2.9)
Subunit of acetophenone carboxylase n=2 Tax=Proteobacteria RepID=H0PWC1_9RHOO (db=UNIREF evalue=1.3e-253 bit_score=881.3 identity=61.0 coverage=99.71751412429379)
AMDSBA4_8_17
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19847..20215)
DNA (369bp) protein (123aa)
acetone carboxylase gamma subunit
Acetone carboxylase gamma subunit n=1 Tax=delta proteobacterium NaphS2 RepID=D8F0D0_9DELT (db=UNIREF evalue=1.1e-30 bit_score=138.3 identity=55.6 coverage=85.36585365853658)
(db=HMMPfam db_id=PF08882 from=3 to=110 evalue=4.1e-43 interpro_id=IPR014979 interpro_description=Acetone carboxylase, gamma subunit-related)
Uncharacterized protein {ECO:0000313|EMBL:EZP76311.1}; TaxID=1295642 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus NUB3621.;"
AMDSBA4_8_18
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20228..22141)
DNA (1914bp) protein (638aa)
hydantoinase/oxoprolinase family protein
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YDY4_9GAMM (db=UNIREF evalue=3.1e-31 bit_score=142.5 identity=27.0 coverage=65.67398119122258)
seg (db=Seg db_id=seg from=315 to=330)
(db=HMMPfam db_id=PF01968 from=197 to=474 evalue=1.7e-57 interpro_id=IPR002821 interpro_description=Hydantoinase/oxoprolinase GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA4_8_19
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22262..24184
DNA (1923bp) protein (641aa)
seg (db=Seg db_id=seg from=395 to=407)
GAF domain-like (db=superfamily db_id=SSF55781 from=68 to=235 evalue=1.0e-24)
no description (db=Gene3D db_id=G3DSA:3.30.450.40 from=76 to=237 evalue=2.2e-19)
no description (db=HMMSmart db_id=SM00065 from=89 to=237 evalue=6.0e-19 interpro_id=IPR003018 interpro_description=GAF GO=Molecular Function: protein binding (GO:0005515))
AMDSBA4_8_20
unknown

Not on your lists

24449..24577
DNA (129bp) protein (43aa)
24449..24577 + ( gc_cont=0.558)
AMDSBA4_8_21
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25301..25885)
DNA (585bp) protein (195aa)
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase n=1 Tax=Frankia sp. EUN1f RepID=D3CXB7_9ACTO (db=UNIREF evalue=3.9e-30 bit_score=137.1 identity=40.8 coverage=89.74358974358975)
(db=HMMPfam db_id=PF03358 from=14 to=157 evalue=4.3e-25 interpro_id=IPR005025 interpro_description=NADPH-dependent FMN reductase)
Flavoproteins (db=superfamily db_id=SSF52218 from=13 to=174 evalue=1.0e-20)
AMDSBA4_8_22
Bacillus bataviensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25866..26513)
DNA (648bp) protein (216aa)
Luciferase-like monooxygenase
Luciferase-like monooxygenase n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BV78_XYLCX (db=UNIREF evalue=2.1e-72 bit_score=277.7 identity=63.2 coverage=97.22222222222221)
Bacterial luciferase-like (db=superfamily db_id=SSF51679 from=1 to=214 evalue=2.7e-38 interpro_id=IPR011251 interpro_description=Luciferase-like domain GO=Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Biological Process: oxidation-reduction process (GO:0055114))
no description (db=Gene3D db_id=G3DSA:3.20.20.30 from=1 to=208 evalue=4.3e-37 interpro_id=IPR011251 interpro_description=Luciferase-like domain GO=Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_8_23
Bacillus bataviensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26546..26968)
DNA (423bp) protein (141aa)
luciferase-like monooxygenase
Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5J0_9GAMM (db=UNIREF evalue=4.4e-39 bit_score=166.4 identity=60.2 coverage=85.81560283687944)
Bacterial luciferase-like (db=superfamily db_id=SSF51679 from=8 to=131 evalue=2.6e-28 interpro_id=IPR011251 interpro_description=Luciferase-like domain GO=Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF00296 from=14 to=132 evalue=4.9e-25 interpro_id=IPR011251 interpro_description=Luciferase-like domain GO=Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_8_24
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27083..27490)
DNA (408bp) protein (136aa)
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=7 to=126 evalue=1.2e-19 interpro_id=IPR009002 interpro_description=FMN-binding split barrel-related)
no description (db=Gene3D db_id=G3DSA:2.30.110.10 from=3 to=126 evalue=1.2e-16 interpro_id=IPR012349 interpro_description=FMN-binding split barrel GO=Molecular Function: FMN binding (GO:0010181), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF01613 from=13 to=125 evalue=1.2e-13 interpro_id=IPR002563 interpro_description=Flavin reductase-like, FMN-binding GO=Molecular Function: FMN binding (GO:0010181), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: flavin reductase activity (GO:0042602), Biological Process: oxidation-reduction process (GO:0055114))
no description (db=HMMSmart db_id=SM00903 from=12 to=135 evalue=6.4e-10 interpro_id=IPR002563 interpro_description=Flavin reductase-like, FMN-binding GO=Molecular Function: FMN binding (GO:0010181), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: flavin reductase activity (GO:0042602), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_8_25

Not on your lists

27732..29168
DNA (1437bp) protein (479aa)
purine-cytosine permease-like transporter
Cytosine permease n=1 Tax=Bacillus halodurans C-125 RepID=Q9KBP3_BACHD (db=UNIREF evalue=1.8e-15 bit_score=89.7 identity=25.4 coverage=65.55323590814196)
transmembrane_regions (db=TMHMM db_id=tmhmm from=434 to=453)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
AMDSBA4_8_26
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

29230..29949
DNA (720bp) protein (240aa)
GntR family transcriptional regulator
Transcriptional regulator, GntR family protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QZB8_9RHOB (db=UNIREF evalue=2.0e-15 bit_score=88.6 identity=27.6 coverage=79.58333333333333)
(db=HMMPfam db_id=PF07729 from=100 to=223 evalue=3.9e-19 interpro_id=IPR011711 interpro_description=GntR, C-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=25 to=97 evalue=5.9e-16)
AMDSBA4_8_27
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29968..31014
DNA (1047bp) protein (349aa)
cupin
Cupin 2 conserved barrel domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q385_KRIFD (db=UNIREF evalue=4.0e-41 bit_score=174.5 identity=63.2 coverage=35.53008595988539)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=230 to=332 evalue=4.4e-14 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=5 to=137 evalue=5.7e-08 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
AMDSBA4_8_28
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31071..31472
DNA (402bp) protein (134aa)
endoribonuclease L-PSP
Putative uncharacterized protein n=1 Tax=Caenorhabditis angaria RepID=B6VBT2_9PELO (db=UNIREF evalue=3.2e-07 bit_score=60.5 identity=30.6 coverage=87.31343283582089)
seg (db=Seg db_id=seg from=40 to=53)
YjgF-like (db=superfamily db_id=SSF55298 from=3 to=131 evalue=3.7e-37 interpro_id=IPR013813 interpro_description=Endoribonuclease L-PSP/chorismate mutase-like)
AMDSBA4_8_29
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31490..32446
DNA (957bp) protein (319aa)
hypothetical protein
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Saccharomonospora marina XMU15 RepID=H5WYV3_9PSEU (db=UNIREF evalue=1.3e-11 bit_score=76.3 identity=24.2 coverage=70.21943573667711)
seg (db=Seg db_id=seg from=212 to=221)
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=1 to=284 evalue=1.5e-37)
AMDSBA4_8_30
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

32443..33339
DNA (897bp) protein (299aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) rbh
Fumarylacetoacetate hydrolase n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1DKS1_NEOFI (db=UNIREF evalue=2.8e-35 bit_score=154.8 identity=37.0 coverage=83.61204013377926)
FUMARYLACETOACETATE HYDROLASE DOMAIN CONTAINING 2 (db=HMMPanther db_id=PTHR11820:SF6 from=28 to=294 evalue=3.4e-94)
FUMARYLACETOACETATE HYDROLASE (db=HMMPanther db_id=PTHR11820 from=28 to=294 evalue=3.4e-94)
Displaying items 1-30 of 121 in total

View Taxonomy