Alias: AMDSBA4_C21
| name | lists | location/seqs | functional annotations | notes |
|---|---|---|---|---|
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AMDSBA4_22_1
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
comp(47..277)
----------------- DNA (231bp) protein (77aa) |
47..277 - ( gc_cont=0.433)
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AMDSBA4_22_2
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
comp(274..522)
----------------- DNA (249bp) protein (83aa) |
hypothetical protein
Putative uncharacterized protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP91_9CLOT (db=UNIREF evalue=4.7e-09 bit_score=65.9 identity=39.4 coverage=84.33734939759037)
Uncharacterized protein n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HCK9_9BACL
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AMDSBA4_22_3
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria
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Not on your lists |
comp(1077..1559)
----------------- DNA (483bp) protein (161aa) |
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=120 to=142)
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AMDSBA4_22_4
unknown
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Not on your lists |
comp(1532..2158)
----------------- DNA (627bp) protein (209aa) |
transmembrane_regions (db=TMHMM db_id=tmhmm from=173 to=195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=120)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
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AMDSBA4_22_5
RBG_13_Euryarchaeota_61_15_curated, Euryarchaeota, Archaea
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Not on your lists |
comp(2275..2964)
----------------- DNA (690bp) protein (230aa) |
hypothetical protein OTW25_02365 n=1 Tax=Ornithinibacillus scapharcae TW25 RepID=UPI000225AD50 (db=UNIREF evalue=3.9e-61 bit_score=240.4 identity=52.5 coverage=94.78260869565217)
Riboflavin biosynthesis protein RibD C-domain protein
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=1 to=221 evalue=8.3e-34 interpro_id=IPR024072 interpro_description=Dihydrofolate reductase-like domain GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF01872 from=3 to=213 evalue=5.5e-24 interpro_id=IPR002734 interpro_description=Bacterial bifunctional deaminase-reductase, C-terminal GO=Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703), Biological Process: riboflavin biosynthetic process (GO:0009231), Biological Process: oxidation-reduction process (GO:0055114))
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AMDSBA4_22_6
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
3091..4092
----------------- DNA (1002bp) protein (334aa) |
transcriptional regulator
Helix-turn-helix, type 11 domain-containing protein n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=E8WG12_STRFA (db=UNIREF evalue=1.5e-08 bit_score=66.2 identity=44.6 coverage=24.251497005988025)
(db=HMMPfam db_id=PF08279 from=9 to=58 evalue=5.1e-13 interpro_id=IPR013196 interpro_description=Helix-turn-helix, type 11)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=62 evalue=9.0e-10)
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AMDSBA4_22_7
Bacillus coagulans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
4441..5844
----------------- DNA (1404bp) protein (468aa) |
amino acid permease
Proline permease n=2 Tax=Streptomyces RepID=B4V700_9ACTO (db=UNIREF evalue=5.5e-46 bit_score=191.0 identity=29.7 coverage=93.80341880341881)
transmembrane_regions (db=TMHMM db_id=tmhmm from=410 to=432)
transmembrane_regions (db=TMHMM db_id=tmhmm from=97 to=119)
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AMDSBA4_22_8
RIFOXYA1_FULL_Paenibacillus_44_5_curated, Firmicutes, Bacteria
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Not on your lists |
comp(6041..7018)
----------------- DNA (978bp) protein (326aa) |
transcriptional regulator
Putative uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G708_9FIRM (db=UNIREF evalue=1.2e-07 bit_score=63.2 identity=30.6 coverage=37.73006134969325)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=107 to=323 evalue=5.9e-43)
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AMDSBA4_22_9
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
7062..8342
----------------- DNA (1281bp) protein (427aa) |
adenylosuccinate synthase
adenylosuccinate synthase
Adenylosuccinate synthetase n=1 Tax=Oribacterium sinus F0268 RepID=C2KVM5_9FIRM (db=UNIREF evalue=1.0e-139 bit_score=502.3 identity=57.2 coverage=98.82903981264637)
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AMDSBA4_22_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(8384..8884)
----------------- DNA (501bp) protein (167aa) |
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I903_SULAT (db=UNIREF evalue=1.7e-53 bit_score=214.5 identity=67.5 coverage=98.80239520958084)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I903_SULAT
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AMDSBA4_22_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(8909..9418)
----------------- DNA (510bp) protein (170aa) |
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I904_SULAT (db=UNIREF evalue=3.3e-41 bit_score=173.7 identity=53.4 coverage=98.82352941176471)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
seg (db=Seg db_id=seg from=24 to=40)
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AMDSBA4_22_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(9425..9922)
----------------- DNA (498bp) protein (166aa) |
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
seg (db=Seg db_id=seg from=36 to=48)
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AMDSBA4_22_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(9922..11079)
----------------- DNA (1158bp) protein (386aa) |
stage III sporulation protein AE
stage III sporulation protein AE
Stage III sporulation protein AE n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M350_9FIRM (db=UNIREF evalue=1.9e-60 bit_score=238.8 identity=42.0 coverage=80.56994818652849)
transmembrane_regions (db=TMHMM db_id=tmhmm from=302 to=324)
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AMDSBA4_22_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(11095..11487)
----------------- DNA (393bp) protein (131aa) |
spoIIIAD; stage III sporulation protein AD
Stage III sporulation protein AD n=12 Tax=Clostridium RepID=B1QDR3_CLOBO (db=UNIREF evalue=2.0e-17 bit_score=94.4 identity=32.8 coverage=94.65648854961832)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
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AMDSBA4_22_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(11505..11702)
----------------- DNA (198bp) protein (66aa) |
Stage III sporulation AC family protein
Stage III sporulation AC family protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TYE1_9FIRM (db=UNIREF evalue=2.3e-22 bit_score=109.8 identity=78.5 coverage=96.96969696969697)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=52)
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AMDSBA4_22_16
unknown
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Not on your lists |
comp(11733..12233)
----------------- DNA (501bp) protein (167aa) |
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
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AMDSBA4_22_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(12230..13144)
----------------- DNA (915bp) protein (305aa) |
spoIIIAA; hypothetical protein
Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z6N7_9FIRM (db=UNIREF evalue=2.8e-35 bit_score=154.8 identity=35.4 coverage=82.29508196721311)
seg (db=Seg db_id=seg from=91 to=102)
seg (db=Seg db_id=seg from=221 to=238)
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AMDSBA4_22_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
13300..14679
----------------- DNA (1380bp) protein (460aa) |
putative signal transduction histidine kinase
GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C657_SPHTD (db=UNIREF evalue=3.0e-52 bit_score=211.8 identity=35.7 coverage=86.73913043478261)
seg (db=Seg db_id=seg from=224 to=234)
seg (db=Seg db_id=seg from=15 to=32)
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AMDSBA4_22_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
14681..15355
----------------- DNA (675bp) protein (225aa) |
LuxR family two component transcriptional regulator
Nitrate/nitrite response regulator protein NarP n=2 Tax=Photorhabdus RepID=Q7N3J6_PHOLL (db=UNIREF evalue=3.4e-25 bit_score=120.9 identity=32.9 coverage=90.22222222222223)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=175 to=202 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
CheY-like (db=superfamily db_id=SSF52172 from=15 to=144 evalue=7.1e-25 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
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AMDSBA4_22_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(15423..15902)
----------------- DNA (480bp) protein (160aa) |
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I9H4_SULAT (db=UNIREF evalue=1.5e-48 bit_score=198.0 identity=59.1 coverage=94.375)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=30 to=58 evalue=NA)
seg (db=Seg db_id=seg from=78 to=96)
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AMDSBA4_22_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(16340..16897)
----------------- DNA (558bp) protein (186aa) |
efp; translation elongation factor P
Elongation factor P 2 n=18 Tax=Lactobacillus RepID=EFP2_LACAC (db=UNIREF evalue=3.5e-52 bit_score=210.3 identity=53.0 coverage=98.9247311827957)
EFP (db=PatternScan db_id=PS01275 from=150 to=169 evalue=0.0 interpro_id=IPR013852 interpro_description=Translation elongation factor P/YeiP, conserved site)
efp: translation elongation factor P (db=HMMTigr db_id=TIGR00038 from=2 to=185 evalue=4.9e-120 interpro_id=IPR011768 interpro_description=Translation elongation factor P GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: cytoplasm (GO:0005737), Biological Process: translational elongation (GO:0006414))
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AMDSBA4_22_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(16936..18027)
----------------- DNA (1092bp) protein (364aa) |
pepP; peptidase M24
rbh
Xaa-Pro dipeptidase n=2 Tax=Rhodopirellula baltica RepID=F2AZ39_RHOBT (db=UNIREF evalue=7.0e-57 bit_score=226.9 identity=37.7 coverage=98.62637362637363)
PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) (db=HMMPanther db_id=PTHR10804 from=178 to=362 evalue=4.9e-69)
PROLINE_PEPTIDASE (db=PatternScan db_id=PS00491 from=292 to=304 evalue=0.0 interpro_id=IPR001131 interpro_description=Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site)
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AMDSBA4_22_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(18024..18464)
----------------- DNA (441bp) protein (147aa) |
3-dehydroquinate dehydratase (EC:4.2.1.10)
Catabolic 3-dehydroquinase 1 n=6 Tax=Trichocomaceae RepID=3DHQ1_ASPFN (db=UNIREF evalue=1.2e-28 bit_score=131.7 identity=46.2 coverage=95.91836734693877)
seg (db=Seg db_id=seg from=132 to=142)
DEHYDROQUINASE_II (db=PatternScan db_id=PS01029 from=7 to=24 evalue=0.0 interpro_id=IPR018509 interpro_description=Dehydroquinase, class II, conserved site GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
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AMDSBA4_22_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(18457..19716)
----------------- DNA (1260bp) protein (420aa) |
glyA; glycine hydroxymethyltransferase
Serine hydroxymethyltransferase 2 n=2 Tax=Photobacterium profundum RepID=GLYA2_PHOPR (db=UNIREF evalue=2.0e-119 bit_score=434.9 identity=55.4 coverage=96.9047619047619)
SHMT (db=PatternScan db_id=PS00096 from=220 to=236 evalue=0.0 interpro_id=IPR019798 interpro_description=Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO=Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372), Biological Process: glycine metabolic process (GO:0006544), Biological Process: L-serine metabolic process (GO:0006563), Molecular Function: pyridoxal phosphate binding (GO:0030170))
SERINE HYDROXYMETHYLTRANSFERASE (db=HMMPanther db_id=PTHR11680 from=8 to=419 evalue=8.1e-215 interpro_id=IPR001085 interpro_description=Serine hydroxymethyltransferase GO=Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372), Biological Process: glycine metabolic process (GO:0006544), Biological Process: L-serine metabolic process (GO:0006563))
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AMDSBA4_22_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(19773..21233)
----------------- DNA (1461bp) protein (487aa) |
glycine dehydrogenase beta subunit (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 2 n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=GCSPB_SYNWW (db=UNIREF evalue=1.0e-159 bit_score=568.9 identity=59.3 coverage=97.3305954825462)
seg (db=Seg db_id=seg from=352 to=364)
seg (db=Seg db_id=seg from=107 to=123)
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AMDSBA4_22_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(21218..22552)
----------------- DNA (1335bp) protein (445aa) |
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=2 Tax=Caldanaerobacter subterraneus RepID=GCSPA_THETN (db=UNIREF evalue=2.5e-109 bit_score=401.4 identity=48.3 coverage=96.85393258426967)
GLYCINE DEHYDROGENASE (db=HMMPanther db_id=PTHR11773 from=1 to=434 evalue=5.4e-161 interpro_id=IPR020581 interpro_description=Glycine cleavage system P protein GO=Molecular Function: glycine dehydrogenase (decarboxylating) activity (GO:0004375), Biological Process: oxidation-reduction process (GO:0055114))
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AMDSBA4_22_27
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(22558..22926)
----------------- DNA (369bp) protein (123aa) |
glycine cleavage system protein H
Putative glycine cleavage system protein H n=1 Tax=mine drainage metagenome RepID=E6QNZ1_9ZZZZ (db=UNIREF evalue=4.4e-27 bit_score=126.3 identity=54.1 coverage=93.4959349593496)
LIPOYL (db=PatternScan db_id=PS00189 from=44 to=73 evalue=0.0 interpro_id=IPR003016 interpro_description=2-oxo acid dehydrogenase, lipoyl-binding site)
gcvH: glycine cleavage system H protein (db=HMMTigr db_id=TIGR00527 from=2 to=121 evalue=4.2e-59 interpro_id=IPR017453 interpro_description=Glycine cleavage H-protein, subgroup GO=Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464))
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AMDSBA4_22_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(22952..24157)
----------------- DNA (1206bp) protein (402aa) |
gcvT; glycine cleavage system T protein
Aminomethyltransferase n=2 Tax=Sulfobacillus acidophilus RepID=G8TTY8_9FIRM (db=UNIREF evalue=2.3e-109 bit_score=401.4 identity=56.7 coverage=88.30845771144278)
gcvT: glycine cleavage system T protein (db=HMMTigr db_id=TIGR00528 from=39 to=397 evalue=8.8e-146 interpro_id=IPR006223 interpro_description=Glycine cleavage system T protein GO=Molecular Function: aminomethyltransferase activity (GO:0004047), Biological Process: glycine catabolic process (GO:0006546))
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AMDSBA4_22_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(24157..25233)
----------------- DNA (1077bp) protein (359aa) |
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=AROB_ALKMQ (db=UNIREF evalue=8.8e-44 bit_score=183.3 identity=37.9 coverage=73.53760445682451)
seg (db=Seg db_id=seg from=89 to=112)
Dehydroquinate synthase-like (db=superfamily db_id=SSF56796 from=3 to=354 evalue=2.1e-88)
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AMDSBA4_22_30
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(25238..25792)
----------------- DNA (555bp) protein (185aa) |
Shikimate kinase (EC:2.7.1.71 4.2.3.4)
Shikimate kinase n=1 Tax=Helicobacter cetorum MIT 00-7128 RepID=I0ELQ3_HELC0 (db=UNIREF evalue=9.5e-10 bit_score=69.3 identity=28.7 coverage=83.24324324324324)
seg (db=Seg db_id=seg from=87 to=101)
SHIKIMATE_KINASE (db=PatternScan db_id=PS01128 from=71 to=97 evalue=0.0 interpro_id=IPR023000 interpro_description=Shikimate kinase, conserved site)
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