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AMDSBA4_30

Alias: AMDSBA4_C29

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Displaying items 31-60 of 69 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_30_31

Not on your lists

comp(26323..26691)
DNA (369bp) protein (123aa)
arsR; hypothetical protein
Predicted transcriptional regulator n=1 Tax=Idiomarina baltica OS145 RepID=A3WN61_9GAMM (db=UNIREF evalue=1.8e-09 bit_score=67.8 identity=36.0 coverage=68.29268292682927)
no description (db=HMMSmart db_id=SM00418 from=7 to=88 evalue=1.4e-27 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=91 evalue=2.0e-27)
AMDSBA4_30_32
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(26793..26975)
DNA (183bp) protein (61aa)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=48 evalue=1.2e-09)
arsR; arsenic resistance operon repressor ArsR Tax=CG_Anaero_02
AMDSBA4_30_33
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27305..27544
DNA (240bp) protein (80aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JN43_9GAMM (db=UNIREF evalue=9.1e-26 bit_score=121.3 identity=77.9 coverage=83.75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
AMDSBA4_30_34
Methanospirillum hungatei, Methanospirillum, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(27620..29047)
DNA (1428bp) protein (476aa)
general substrate transporter
Major facilitator superfamily MFS_1 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGD5_9EURY (db=UNIREF evalue=1.5e-75 bit_score=289.3 identity=35.1 coverage=93.69747899159664)
transmembrane_regions (db=TMHMM db_id=tmhmm from=393 to=415)
seg (db=Seg db_id=seg from=157 to=169)
AMDSBA4_30_35
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29165..30349)
DNA (1185bp) protein (395aa)
rlmI; hypothetical protein
Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWU4_9AQUI (db=UNIREF evalue=1.0e-69 bit_score=269.6 identity=38.9 coverage=93.92405063291139)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=80 to=390 evalue=2.0e-75)
(db=HMMPfam db_id=PF10672 from=170 to=357 evalue=5.9e-21 interpro_id=IPR019614 interpro_description=S-adenosylmethionine-dependent methyltransferase GO=Molecular Function: methyltransferase activity (GO:0008168))
AMDSBA4_30_36
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30446..31636)
DNA (1191bp) protein (397aa)
FAD dependent oxidoreductase rbh
(db=HMMPfam db_id=PF01266 from=30 to=365 evalue=4.7e-61 interpro_id=IPR006076 interpro_description=FAD dependent oxidoreductase GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=28 to=371 evalue=2.1e-44)
no description (db=Gene3D db_id=G3DSA:3.50.50.60 from=25 to=376 evalue=5.7e-43)
AMDSBA4_30_37
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32063..33019
DNA (957bp) protein (319aa)
Selenide, water dikinase
Selenide, water dikinase
Selenide, water dikinase n=3 Tax=Clostridium botulinum RepID=SELD_CLOBA (db=UNIREF evalue=1.6e-52 bit_score=212.2 identity=40.7 coverage=96.23824451410658)
Selenophosphate synthetase (db=HMMPIR db_id=PIRSF036407 from=1 to=317 evalue=1.8e-115 interpro_id=IPR004536 interpro_description=Selenide water dikinase GO=Molecular Function: selenide, water dikinase activity (GO:0004756), Molecular Function: ATP binding (GO:0005524))
AMDSBA4_30_38
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34282..34503
DNA (222bp) protein (74aa)
hypothetical protein
Uncharacterized protein family UPF0150 n=2 Tax=Sulfobacillus acidophilus RepID=G8TTN7_9FIRM (db=UNIREF evalue=7.9e-32 bit_score=141.4 identity=91.8 coverage=97.2972972972973)
coiled-coil (db=Coil db_id=coil from=31 to=52 evalue=NA)
seg (db=Seg db_id=seg from=51 to=68)
AMDSBA4_30_39
unknown

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34500..34616
DNA (117bp) protein (39aa)
34500..34616 + ( gc_cont=0.581)
AMDSBA4_30_40
unknown

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34766..34897
DNA (132bp) protein (44aa)
34766..34897 + ( gc_cont=0.545)
AMDSBA4_30_41
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

35131..35802
DNA (672bp) protein (224aa)
alpha/beta hydrolase fold protein
Valacyclovir hydrolase, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MST3_TALSN (db=UNIREF evalue=5.2e-18 bit_score=97.1 identity=37.5 coverage=55.35714285714286)
Putative aminoacrylate hydrolase RutD {ECO:0000313|EMBL:KJE76800.1}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Fer
Alpha/beta hydrolase fold protein n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7PVM1_CATAD
AMDSBA4_30_42
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35846..36322)
DNA (477bp) protein (159aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG7_9FIRM (db=UNIREF evalue=2.2e-47 bit_score=194.1 identity=68.1 coverage=86.16352201257862)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
AMDSBA4_30_43
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36498..37964)
DNA (1467bp) protein (489aa)
gltX; glutamyl-tRNA synthetase
gltX; glutamyl-tRNA synthetase
Glutamate--tRNA ligase 1 n=8 Tax=Caldicellulosiruptor RepID=SYE1_CALS8 (db=UNIREF evalue=2.0e-107 bit_score=395.2 identity=44.6 coverage=95.91002044989774)
AMDSBA4_30_44
unknown

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comp(38122..38361)
DNA (240bp) protein (80aa)
38122..38361 - ( gc_cont=0.504)
AMDSBA4_30_45
GWA2_Deltaproteobacteria_45_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38382..39047)
DNA (666bp) protein (222aa)
Putative uncharacterized protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I083_9BACT (db=UNIREF evalue=4.0e-47 bit_score=193.7 identity=45.2 coverage=95.04504504504504)
hypothetical protein
seg (db=Seg db_id=seg from=38 to=53)
(db=HMMPfam db_id=PF08843 from=15 to=169 evalue=2.5e-05 interpro_id=IPR014942 interpro_description=Protein of unknown function DUF1814)
AMDSBA4_30_46
unknown

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comp(39285..39554)
DNA (270bp) protein (90aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=67 to=80)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
AMDSBA4_30_47
unknown

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comp(39596..39826)
DNA (231bp) protein (77aa)
seg (db=Seg db_id=seg from=36 to=47)
AMDSBA4_30_48
unknown

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comp(39783..40154)
DNA (372bp) protein (124aa)
seg (db=Seg db_id=seg from=13 to=26)
AMDSBA4_30_49
unknown

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comp(40407..41045)
DNA (639bp) protein (213aa)
40407..41045 - ( gc_cont=0.587)
AMDSBA4_30_50
Thermoanaerobacter sp. YS13, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

41471..42631
DNA (1161bp) protein (387aa)
cystathionine gamma-synthase (EC:2.5.1.48)
Cystathionine gamma-lyase n=14 Tax=Eutheria RepID=CGL_BOVIN (db=UNIREF evalue=8.9e-50 bit_score=203.4 identity=31.0 coverage=88.37209302325581)
CYS_MET_METAB_PP (db=PatternScan db_id=PS00868 from=195 to=209 evalue=0.0 interpro_id=IPR000277 interpro_description=Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: pyridoxal phosphate binding (GO:0030170))
Cystathionine gamma-synthase (db=HMMPIR db_id=PIRSF001434 from=4 to=386 evalue=3.0e-132 interpro_id=IPR000277 interpro_description=Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMDSBA4_30_51
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42662..44287
DNA (1626bp) protein (542aa)
amino acid permease-associated protein
amino acid permease-associated protein
Cationic amino acid transporter, putative n=1 Tax=Ixodes scapularis RepID=B7P272_IXOSC (db=UNIREF evalue=1.9e-26 bit_score=126.3 identity=24.8 coverage=71.03321033210332)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBA4_30_52
R_NC10_66_22, NC10, Bacteria

Not on your lists

44564..45490
DNA (927bp) protein (309aa)
Transcriptional regulator contains sigma factor-related N-terminal domain
Transcriptional regulator, DeoR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PKF1_KRIFD (db=UNIREF evalue=9.3e-26 bit_score=123.2 identity=28.6 coverage=95.79288025889967)
(db=HMMPfam db_id=PF04198 from=50 to=303 evalue=5.7e-65 interpro_id=IPR007324 interpro_description=Sugar-binding domain, putative GO=Molecular Function: carbohydrate binding (GO:0030246))
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
AMDSBA4_30_53
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

45694..46905
DNA (1212bp) protein (404aa)
5-methylthioribose kinase
Methylthioribose kinase n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QIR2_GLUHA (db=UNIREF evalue=6.2e-38 bit_score=164.1 identity=36.9 coverage=67.07920792079209)
5-methylthioribose kinase (db=HMMPIR db_id=PIRSF031134 from=1 to=403 evalue=1.1e-173 interpro_id=IPR009212 interpro_description=Methylthioribose kinase GO=Biological Process: methionine biosynthetic process (GO:0009086), Molecular Function: S-methyl-5-thioribose kinase activity (GO:0046522))
MTRK: 5-methylthioribose kinase (db=HMMTigr db_id=TIGR01767 from=34 to=403 evalue=2.6e-137 interpro_id=IPR009212 interpro_description=Methylthioribose kinase GO=Biological Process: methionine biosynthetic process (GO:0009086), Molecular Function: S-methyl-5-thioribose kinase activity (GO:0046522))
AMDSBA4_30_54
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(47204..48163)
DNA (960bp) protein (320aa)
Ion transport 2 domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=61)
seg (db=Seg db_id=seg from=17 to=34)
seg (db=Seg db_id=seg from=84 to=96)
AMDSBA4_30_55
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(48270..48866)
DNA (597bp) protein (199aa)
DNA replication and repair protein RecR
Recombination protein RecR n=4 Tax=Anaeromyxobacter RepID=RECR_ANADE (db=UNIREF evalue=2.7e-63 bit_score=247.3 identity=60.6 coverage=98.99497487437185)
RECR (db=PatternScan db_id=PS01300 from=57 to=78 evalue=0.0 interpro_id=IPR015967 interpro_description=Recombination protein RecR, conserved site GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
recR: recombination protein RecR (db=HMMTigr db_id=TIGR00615 from=1 to=196 evalue=8.4e-116 interpro_id=IPR000093 interpro_description=DNA recombination protein RecR GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
AMDSBA4_30_56
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(48867..49196)
DNA (330bp) protein (110aa)
hypothetical protein
UPF0133 protein Sulac_0118 n=2 Tax=Sulfobacillus acidophilus RepID=G8TVQ2_9FIRM (db=UNIREF evalue=2.4e-37 bit_score=160.2 identity=73.6 coverage=98.18181818181819)
coiled-coil (db=Coil db_id=coil from=8 to=36 evalue=NA)
seg (db=Seg db_id=seg from=31 to=42)
AMDSBA4_30_57
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49305..50870)
DNA (1566bp) protein (522aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M1M4_ACIFD (db=UNIREF evalue=7.2e-63 bit_score=247.3 identity=41.8 coverage=68.96551724137932)
seg (db=Seg db_id=seg from=386 to=400)
dnaX_nterm: DNA polymerase III, subunit ga (db=HMMTigr db_id=TIGR02397 from=3 to=360 evalue=6.9e-150 interpro_id=IPR012763 interpro_description=DNA polymerase III, subunit gamma/ tau GO=Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260), Cellular Component: DNA polymerase III complex (GO:0009360))
AMDSBA4_30_58
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51286..51735)
DNA (450bp) protein (150aa)
CMP/dCMP deaminase zinc-binding protein
tRNA-specific adenosine deaminase n=28 Tax=Haemophilus RepID=TADA_HAEIN (db=UNIREF evalue=1.3e-25 bit_score=121.7 identity=43.4 coverage=94.66666666666667)
seg (db=Seg db_id=seg from=8 to=18)
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=53 to=90 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
AMDSBA4_30_59
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(52280..53080)
DNA (801bp) protein (267aa)
Carboxymethylenebutenolidase (EC:3.1.1.45)
Carboxymethylenebutenolidase n=35 Tax=pseudomallei group RepID=A4LF54_BURPE (db=UNIREF evalue=1.6e-13 bit_score=82.4 identity=31.9 coverage=55.0561797752809)
(db=HMMPfam db_id=PF01738 from=18 to=264 evalue=5.2e-56 interpro_id=IPR002925 interpro_description=Dienelactone hydrolase GO=Molecular Function: hydrolase activity (GO:0016787))
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=3 to=265 evalue=2.8e-47)
AMDSBA4_30_60
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53196..54449)
DNA (1254bp) protein (418aa)
NLP/P60 protein
NLP/P60 protein n=1 Tax=Acetonema longum DSM 6540 RepID=F7NEW0_9FIRM (db=UNIREF evalue=4.2e-45 bit_score=188.0 identity=31.1 coverage=92.34449760765551)
Cysteine proteinases (db=superfamily db_id=SSF54001 from=262 to=395 evalue=5.1e-13)
(db=HMMPfam db_id=PF00877 from=286 to=361 evalue=2.9e-10 interpro_id=IPR000064 interpro_description=NLP/P60)
Displaying items 31-60 of 69 in total

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