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AMDSBA4_30

Alias: AMDSBA4_C29

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Displaying items 1-30 of 69 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_30_1
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

396..1961
DNA (1566bp) protein (522aa)
abc transporter ATP-binding protein
Regulation of translational elongation-related protein n=1 Tax=Wallemia sebi CBS 633.66 RepID=I4YGX6_WALSE (db=UNIREF evalue=1.0e-53 bit_score=216.9 identity=30.6 coverage=97.12643678160919)
coiled-coil (db=Coil db_id=coil from=86 to=107 evalue=NA)
ATP-BINDING TRANSPORT PROTEIN-RELATED (db=HMMPanther db_id=PTHR19211 from=134 to=512 evalue=3.6e-102)
AMDSBA4_30_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2055..3605)
DNA (1551bp) protein (517aa)
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12) rbh
1-pyrroline-5-carboxylate dehydrogenase 1 n=1 Tax=Bacillus halodurans C-125 RepID=ROCA1_BACHD (db=UNIREF evalue=8.2e-160 bit_score=569.3 identity=55.3 coverage=99.22630560928434)
seg (db=Seg db_id=seg from=62 to=82)
seg (db=Seg db_id=seg from=327 to=337)
AMDSBA4_30_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3663..4088)
DNA (426bp) protein (142aa)
thioesterase
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=1 to=133 evalue=2.2e-23)
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=3 to=133 evalue=8.1e-20)
(db=HMMPfam db_id=PF03061 from=17 to=93 evalue=1.0e-06 interpro_id=IPR006683 interpro_description=Thioesterase superfamily)
AMDSBA4_30_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4489..5406
DNA (918bp) protein (306aa)
Protease HtpX homolog n=2 Tax=Sulfobacillus acidophilus RepID=G8TW71_9FIRM (db=UNIREF evalue=5.6e-116 bit_score=422.9 identity=70.2 coverage=99.34640522875817)
Heat shock protein
Heat shock protein
AMDSBA4_30_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5422..5976
DNA (555bp) protein (185aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Halorhabdus RepID=C7NN72_HALUD (db=UNIREF evalue=6.4e-22 bit_score=109.8 identity=32.4 coverage=87.02702702702703)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4C0_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEW03713.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA4_30_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5985..6254)
DNA (270bp) protein (90aa)
5985..6254 - ( gc_cont=0.444)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03712.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4B9_SULAT
AMDSBA4_30_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6251..6967)
DNA (717bp) protein (239aa)
phage shock protein A, PspA
Transcription regulator n=3 Tax=Streptomyces RepID=B5GI34_9ACTO (db=UNIREF evalue=1.3e-56 bit_score=225.3 identity=51.5 coverage=96.23430962343096)
coiled-coil (db=Coil db_id=coil from=47 to=82 evalue=NA)
coiled-coil (db=Coil db_id=coil from=94 to=132 evalue=NA)
AMDSBA4_30_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7094..7345
DNA (252bp) protein (84aa)
hypothetical protein (db=KEGG evalue=2.1e-12 bit_score=76.6 identity=45.2 coverage=95.23809523809523)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TW67_9FIRM (db=UNIREF evalue=2.7e-12 bit_score=76.6 identity=45.2 coverage=95.23809523809523)
AMDSBA4_30_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7326..8975)
DNA (1650bp) protein (550aa)
CTP synthase (EC:6.3.4.2)
CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Gordonibacter pamelaeae 7-10-1-b RepID=D6E6J0_9ACTN (db=UNIREF evalue=8.1e-190 bit_score=669.1 identity=60.5 coverage=96.36363636363636)
AMDSBA4_30_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9040..9324)
DNA (285bp) protein (95aa)
DNA-directed RNA polymerase subunit delta
DNA-directed RNA polymerase delta subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TW65_9FIRM (db=UNIREF evalue=3.5e-32 bit_score=142.9 identity=68.0 coverage=97.89473684210527)
MAINTENANCE OF KILLER 16 (MAK16) PROTEIN-RELATED (db=HMMPanther db_id=PTHR23405 from=10 to=69 evalue=1.7e-09)
seg (db=Seg db_id=seg from=80 to=93)
AMDSBA4_30_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9751..11019
DNA (1269bp) protein (423aa)
NLP/P60 protein rbh
NLP/P60 protein rbh
Probable endopeptidase YddH n=5 Tax=Bacillus RepID=YDDH_BACSU (db=UNIREF evalue=8.8e-19 bit_score=100.5 identity=46.7 coverage=24.113475177304963)
seg (db=Seg db_id=seg from=14 to=26)
AMDSBA4_30_12
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11092..12627
DNA (1536bp) protein (512aa)
beta-N-acetylglucosaminidase
Beta-hexosaminidase n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=NAGZ_ALHEH (db=UNIREF evalue=6.2e-43 bit_score=181.0 identity=38.5 coverage=54.8828125)
seg (db=Seg db_id=seg from=125 to=137)
no description (db=Gene3D db_id=G3DSA:3.20.20.300 from=6 to=355 evalue=9.2e-93 interpro_id=IPR001764 interpro_description=Glycoside hydrolase, family 3, N-terminal GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA4_30_13
unknown

Not on your lists

12624..13091
DNA (468bp) protein (156aa)
seg (db=Seg db_id=seg from=45 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=63)
AMDSBA4_30_14
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12931..14559)
DNA (1629bp) protein (543aa)
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase
Long-chain-fatty-acid--CoA ligase (FadD-4) n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=O29418_ARCFU (db=UNIREF evalue=8.2e-102 bit_score=376.7 identity=51.7 coverage=67.21915285451196)
AMDSBA4_30_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14562..15320)
DNA (759bp) protein (253aa)
short chain enoyl-CoA hydratase (EC:4.2.1.17) rbh
3-hydroxyacyl-CoA dehydrogenase n=20 Tax=Burkholderia RepID=A2VV43_9BURK (db=UNIREF evalue=3.5e-31 bit_score=141.0 identity=43.0 coverage=73.12252964426878)
ENOYL_COA_HYDRATASE (db=PatternScan db_id=PS00166 from=96 to=116 evalue=0.0 interpro_id=IPR018376 interpro_description=Enoyl-CoA hydratase/isomerase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ClpP/crotonase (db=superfamily db_id=SSF52096 from=1 to=252 evalue=1.5e-84)
AMDSBA4_30_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15338..15646)
DNA (309bp) protein (103aa)
6-phosphogluconate dehydrogenase C-terminal domain-like (db=superfamily db_id=SSF48179 from=7 to=102 evalue=1.1e-25 interpro_id=IPR008927 interpro_description=6-phosphogluconate dehydrogenase, C-terminal-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF00725 from=10 to=100 evalue=9.4e-23 interpro_id=IPR006108 interpro_description=3-hydroxyacyl-CoA dehydrogenase, C-terminal GO=Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857), Biological Process: fatty acid metabolic process (GO:0006631), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.10.1040.10 from=14 to=102 evalue=2.6e-19 interpro_id=IPR013328 interpro_description=Dehydrogenase, multihelical GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: coenzyme binding (GO:0050662), Biological Process: oxidation-reduction process (GO:0055114))
3-HYDROXYACYL-COA DEHYROGENASE (db=HMMPanther db_id=PTHR23309 from=1 to=99 evalue=1.2e-15)
AMDSBA4_30_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15667..16515)
DNA (849bp) protein (283aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35) rbh
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35) rbh
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERU3_9FIRM (db=UNIREF evalue=6.7e-31 bit_score=140.2 identity=31.1 coverage=97.87985865724382)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA4_30_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16750..17229
DNA (480bp) protein (160aa)
Regulatory protein MarR n=2 Tax=Sulfobacillus acidophilus RepID=G8TVR3_9FIRM (db=UNIREF evalue=1.6e-53 bit_score=214.5 identity=73.0 coverage=94.375)
regulatory protein MarR
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=6 to=143 evalue=2.6e-26)
no description (db=HMMSmart db_id=SM00347 from=30 to=130 evalue=2.5e-17 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA4_30_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17307..17663
DNA (357bp) protein (119aa)
iron-sulfur cluster assembly accessory protein
Iron-sulfur cluster assembly accessory protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QQJ2_9EURY (db=UNIREF evalue=8.5e-20 bit_score=102.1 identity=43.1 coverage=88.23529411764706)
HESB (db=PatternScan db_id=PS01152 from=87 to=104 evalue=0.0 interpro_id=IPR017870 interpro_description=FeS cluster insertion, C-terminal, conserved site)
TIGR00049: iron-sulfur cluster assembly acc (db=HMMTigr db_id=TIGR00049 from=2 to=106 evalue=9.8e-53 interpro_id=IPR016092 interpro_description=FeS cluster insertion GO=Molecular Function: structural molecule activity (GO:0005198), Biological Process: iron-sulfur cluster assembly (GO:0016226), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA4_30_20
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

17750..18211
DNA (462bp) protein (154aa)
Uncharacterized protein possibly involved in aromatic compounds catabolism
Thioesterase family protein n=1 Tax=Corallococcus coralloides DSM 2259 RepID=H8MWT6_CORCM (db=UNIREF evalue=4.4e-08 bit_score=63.5 identity=31.1 coverage=75.32467532467533)
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=20 to=146 evalue=1.4e-23)
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=20 to=144 evalue=6.8e-16)
AMDSBA4_30_21
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

18375..18752
DNA (378bp) protein (126aa)
Inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase (db=superfamily db_id=SSF50324 from=2 to=68 evalue=1.0e-20 interpro_id=IPR008162 interpro_description=Inorganic pyrophosphatase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: inorganic diphosphatase activity (GO:0004427), Cellular Component: cytoplasm (GO:0005737), Biological Process: phosphate-containing compound metabolic process (GO:0006796))
(db=HMMPfam db_id=PF00719 from=5 to=66 evalue=4.3e-20 interpro_id=IPR008162 interpro_description=Inorganic pyrophosphatase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: inorganic diphosphatase activity (GO:0004427), Cellular Component: cytoplasm (GO:0005737), Biological Process: phosphate-containing compound metabolic process (GO:0006796))
no description (db=Gene3D db_id=G3DSA:3.90.80.10 from=2 to=68 evalue=1.4e-16 interpro_id=IPR008162 interpro_description=Inorganic pyrophosphatase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: inorganic diphosphatase activity (GO:0004427), Cellular Component: cytoplasm (GO:0005737), Biological Process: phosphate-containing compound metabolic process (GO:0006796))
AMDSBA4_30_22
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(18923..20281)
DNA (1359bp) protein (453aa)
NAD(FAD)-dependent dehydrogenase
NAD(FAD)-dependent dehydrogenase
NADH oxidase (Putative) n=1 Tax=Oenococcus kitaharae DSM 17330 RepID=G9WFL6_9LACT (db=UNIREF evalue=2.5e-112 bit_score=411.4 identity=47.2 coverage=97.7924944812362)
AMDSBA4_30_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20311..21606)
DNA (1296bp) protein (432aa)
TC 2.A.45.1.1) rbh
TC 2.A.45.1.1) rbh
Arsenical pump membrane protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M1C3_ACIFD (db=UNIREF evalue=2.6e-135 bit_score=487.6 identity=59.0 coverage=97.91666666666666)
transmembrane_regions (db=TMHMM db_id=tmhmm from=404 to=426)
AMDSBA4_30_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21826..22773
DNA (948bp) protein (316aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Sulfurimonas autotrophica DSM 16294 RepID=E0UP78_SULAO (db=UNIREF evalue=2.8e-38 bit_score=164.9 identity=34.3 coverage=86.07594936708861)
Uncharacterized protein {ECO:0000313|EMBL:AEW06856.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I282_SULAT
AMDSBA4_30_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22832..23518)
DNA (687bp) protein (229aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TTU0_9FIRM (db=UNIREF evalue=9.8e-81 bit_score=305.4 identity=67.3 coverage=92.57641921397381)
FwdE-like (db=superfamily db_id=SSF143555 from=46 to=199 evalue=3.2e-07)
AMDSBA4_30_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23520..23870)
DNA (351bp) protein (117aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I276_SULAT (db=UNIREF evalue=8.6e-41 bit_score=171.8 identity=69.0 coverage=98.29059829059828)
DsrEFH-like (db=superfamily db_id=SSF75169 from=1 to=116 evalue=3.8e-08)
(db=HMMPfam db_id=PF02635 from=3 to=116 evalue=6.3e-07 interpro_id=IPR003787 interpro_description=Sulphur relay, DsrE/F-like protein)
AMDSBA4_30_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23905..24834)
DNA (930bp) protein (310aa)
arsenite efflux ATP-binding protein ArsA (EC:3.6.3.16)
Arsenical pump-driving ATPase n=3 Tax=Enterobacteriaceae RepID=ARSA1_ECOLX (db=UNIREF evalue=1.0e-32 bit_score=146.4 identity=33.0 coverage=89.03225806451613)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=11 to=299 evalue=4.9e-70)
(db=HMMPfam db_id=PF02374 from=21 to=297 evalue=2.3e-69)
AMDSBA4_30_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24788..25666)
DNA (879bp) protein (293aa)
arsA; arsenite efflux ATP-binding protein ArsA
Arsenite-activated ATPase ArsA n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IMZ6_9BURK (db=UNIREF evalue=3.3e-57 bit_score=227.6 identity=44.9 coverage=94.53924914675767)
seg (db=Seg db_id=seg from=199 to=212)
seg (db=Seg db_id=seg from=65 to=84)
AMDSBA4_30_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25672..25989)
DNA (318bp) protein (106aa)
arsenical resistance operon trans-acting repressor ArsD
Arsenical resistance operon trans-acting repressor ArsD n=2 Tax=Enterobacteriaceae RepID=ARSD1_ECOLX (db=UNIREF evalue=2.1e-09 bit_score=67.4 identity=35.1 coverage=86.79245283018868)
(db=HMMPfam db_id=PF06953 from=2 to=96 evalue=3.0e-29 interpro_id=IPR010712 interpro_description=Arsenical-resistance operon trans-acting repressor ArsD GO=Molecular Function: DNA binding (GO:0003677), Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892), Biological Process: response to arsenic-containing substance (GO:0046685))
Uncharacterized protein {ECO:0000313|EMBL:AEW06853.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA4_30_30
Leptospirillum sp. Group IV, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(26006..26266)
DNA (261bp) protein (87aa)
alkylhydroperoxidase
Alkylhydroperoxidase like protein, AhpD family n=2 Tax=Sulfobacillus acidophilus RepID=G8TTU5_9FIRM (db=UNIREF evalue=3.1e-11 bit_score=73.2 identity=39.1 coverage=97.70114942528735)
(db=HMMPfam db_id=PF02627 from=2 to=50 evalue=8.8e-13 interpro_id=IPR003779 interpro_description=Carboxymuconolactone decarboxylase GO=Molecular Function: peroxiredoxin activity (GO:0051920), Biological Process: oxidation-reduction process (GO:0055114))
AhpD-like (db=superfamily db_id=SSF69118 from=1 to=51 evalue=1.6e-10)
Displaying items 1-30 of 69 in total

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