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AMDSBA4_32

Alias: AMDSBA4_C31

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA4_32_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1058)
-----------------
DNA (1056bp)
protein (352aa)
copA; copper-translocating P-type ATPase
Heavy metal translocating P-type ATPase n=1 Tax=Acidilobus saccharovorans 345-15 RepID=D9Q0Z7_ACIS3 (db=UNIREF evalue=2.4e-33 bit_score=148.7 identity=32.8 coverage=89.77272727272727)
COPPER-TRANSPORTING ATPASE P-TYPE (COPA) (db=HMMPanther db_id=PTHR11939:SF39 from=9 to=350 evalue=6.5e-67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=167 to=186)
AMDSBA4_32_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1039..1446)
-----------------
DNA (408bp)
protein (136aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TVW0_9FIRM (db=UNIREF evalue=2.9e-40 bit_score=170.2 identity=67.2 coverage=86.76470588235294)
(db=HMMPfam db_id=PF02583 from=5 to=84 evalue=5.9e-18 interpro_id=IPR003735 interpro_description=Protein of unknown function DUF156)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IBQ9_SULAT
AMDSBA4_32_3
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2484..3155
-----------------
DNA (672bp)
protein (224aa)
Nitrite and nitric oxide reductase regulator n=2 Tax=Achromobacter xylosoxidans RepID=F7T5F2_ALCXX (db=UNIREF evalue=3.2e-12 bit_score=77.8 identity=24.7 coverage=94.64285714285714)
seg (db=Seg db_id=seg from=38 to=53)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=13 to=142 evalue=4.4e-25 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=8 to=142 evalue=6.0e-20 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
AMDSBA4_32_4
Thermofilum sp. 1910b, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

4507..5301
-----------------
DNA (795bp)
protein (265aa)
seg (db=Seg db_id=seg from=33 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=245 to=263)
transmembrane_regions (db=TMHMM db_id=tmhmm from=216 to=238)
transmembrane_regions (db=TMHMM db_id=tmhmm from=190 to=212)
AMDSBA4_32_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5552..6823
-----------------
DNA (1272bp)
protein (424aa)
major facilitator superfamily protein
Major facilitator superfamily protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PFS6_9EURY (db=UNIREF evalue=4.3e-82 bit_score=310.8 identity=46.6 coverage=93.63207547169812)
seg (db=Seg db_id=seg from=98 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=270 to=292)
AMDSBA4_32_6
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6914..7045
-----------------
DNA (132bp)
protein (44aa)
DISULFIDE OXIDOREDUCTASE (db=HMMPanther db_id=PTHR22912 from=6 to=42 evalue=7.3e-10)
NADH OXIDASE-RELATED (db=HMMPanther db_id=PTHR22912:SF2 from=6 to=42 evalue=7.3e-10)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=41 evalue=1.9e-07)
CoA-disulfide reductase (EC:1.8.1.14)
AMDSBA4_32_7
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7070..8260
-----------------
DNA (1191bp)
protein (397aa)
rubredoxin reductase, selenocysteine-containing
Multidomain redox protein (NAD(FAD)-dependent oxidoreductase; Rhodanese domain; SirA-like redox domain; Peroxiredoxin domain) n=3 Tax=Paenibacillus polymyxa RepID=E3EE44_PAEPS (db=UNIREF evalue=2.2e-67 bit_score=261.9 identity=36.6 coverage=97.48110831234257)
seg (db=Seg db_id=seg from=184 to=193)
seg (db=Seg db_id=seg from=333 to=348)
AMDSBA4_32_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8396..8980
-----------------
DNA (585bp)
protein (195aa)
hypothetical protein
Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L028_THERP (db=UNIREF evalue=9.4e-08 bit_score=62.8 identity=35.1 coverage=54.871794871794876)
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=5 to=114 evalue=7.1e-15 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=6 to=108 evalue=3.4e-12)
AMDSBA4_32_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9634..9963)
-----------------
DNA (330bp)
protein (110aa)
transposase IS4 family protein
Transposase IS4 family protein n=11 Tax=Spirochaeta thermophila RepID=E6JV34_9SPIO (db=UNIREF evalue=8.7e-19 bit_score=98.6 identity=52.8 coverage=80.0)
(db=HMMPfam db_id=PF01609 from=3 to=78 evalue=4.5e-07 interpro_id=IPR002559 interpro_description=Transposase, IS4-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
AMDSBA4_32_10
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9953..10366)
-----------------
DNA (414bp)
protein (138aa)
Transposase IS4 family protein n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L8H0_9BACI (db=UNIREF evalue=1.7e-32 bit_score=144.4 identity=56.2 coverage=86.95652173913044)
transposase IS4 family protein
Transposase IS4 family protein (Fragment) n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5LB54_9BACI
AMDSBA4_32_11

Not on your lists

comp(10363..10512)
-----------------
DNA (150bp)
protein (50aa)
10363..10512 - ( gc_cont=0.580)
Transposase IS4 family protein n=1 Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WVD8_BACT2
AMDSBA4_32_12
unknown

Not on your lists

comp(11043..11147)
-----------------
DNA (105bp)
protein (35aa)
(db=HMMPfam db_id=PF12323 from=1 to=31 evalue=1.3e-09 interpro_id=IPR021027 interpro_description=Transposase, putative, helix-turn-helix domain)
AMDSBA4_32_13
Mycobacterium neoaurum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11395..11862
-----------------
DNA (468bp)
protein (156aa)
seg (db=Seg db_id=seg from=21 to=38)
HTH_MARR_1 (db=PatternScan db_id=PS01117 from=67 to=101 evalue=0.0 interpro_id=IPR023187 interpro_description=Transcriptional regulator MarR-type, conserved site)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=146 evalue=9.2e-28)
no description (db=HMMSmart db_id=SM00347 from=28 to=128 evalue=2.9e-17 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA4_32_14
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

11859..12602
-----------------
DNA (744bp)
protein (248aa)
ABC transporter-like protein
Sulfate/thiosulfate import ATP-binding protein CysA n=3 Tax=Enterobacteriaceae RepID=CYSA_PHOLL (db=UNIREF evalue=5.5e-29 bit_score=133.7 identity=36.9 coverage=85.48387096774194)
seg (db=Seg db_id=seg from=152 to=163)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=10 to=230 evalue=4.0e-97)
AMDSBA4_32_15
R_OP11_Pacebacteria_46_10, Pacebacteria, Microgenomates, Bacteria

Not on your lists

12599..13804
-----------------
DNA (1206bp)
protein (402aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CM00_9FIRM (db=UNIREF evalue=7.3e-39 bit_score=167.2 identity=29.7 coverage=98.2587064676617)
seg (db=Seg db_id=seg from=118 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=362 to=384)
AMDSBA4_32_16
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13914..14543
-----------------
DNA (630bp)
protein (210aa)
Transposase IS891/IS1136/IS1341 family n=2 Tax=Ectothiorhodospiraceae RepID=G4E2B6_9GAMM (db=UNIREF evalue=1.3e-31 bit_score=142.1 identity=49.6 coverage=65.71428571428571)
transposase
seg (db=Seg db_id=seg from=143 to=157)
AMDSBA4_32_17
unknown

Not on your lists

15644..16126
-----------------
DNA (483bp)
protein (161aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=137 to=159)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=54)
AMDSBA4_32_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16388..17536)
-----------------
DNA (1149bp)
protein (383aa)
spore germination protein
Spore germination protein n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=G6I8F2_9FIRM (db=UNIREF evalue=5.2e-10 bit_score=71.2 identity=25.1 coverage=84.07310704960835)
transmembrane_regions (db=TMHMM db_id=tmhmm from=220 to=242)
transmembrane_regions (db=TMHMM db_id=tmhmm from=273 to=295)
AMDSBA4_32_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17845..18603)
-----------------
DNA (759bp)
protein (253aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJM5_9FIRM (db=UNIREF evalue=2.9e-17 bit_score=94.7 identity=34.7 coverage=65.61264822134387)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
(db=HMMPfam db_id=PF00912 from=56 to=223 evalue=1.0e-55 interpro_id=IPR001264 interpro_description=Glycosyl transferase, family 51 GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Cellular Component: peptidoglycan-based cell wall (GO:0009274))
AMDSBA4_32_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18685..19023)
-----------------
DNA (339bp)
protein (113aa)
(db=HMMPfam db_id=PF12323 from=1 to=32 evalue=4.1e-07 interpro_id=IPR021027 interpro_description=Transposase, putative, helix-turn-helix domain)
AMDSBA4_32_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19276..20643
-----------------
DNA (1368bp)
protein (456aa)
glycosyl transferase family protein
Quinoprotein alcohol dehydrogenase-like (db=superfamily db_id=SSF50998 from=85 to=447 evalue=7.9e-25 interpro_id=IPR011047 interpro_description=Quinonprotein alcohol dehydrogenase-like)
no description (db=Gene3D db_id=G3DSA:2.140.10.10 from=28 to=228 evalue=6.4e-12 interpro_id=IPR011047 interpro_description=Quinonprotein alcohol dehydrogenase-like)
no description (db=Gene3D db_id=G3DSA:2.140.10.10 from=236 to=424 evalue=1.9e-11 interpro_id=IPR011047 interpro_description=Quinonprotein alcohol dehydrogenase-like)
AMDSBA4_32_22
unknown

Not on your lists

20829..20972
-----------------
DNA (144bp)
protein (48aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
AMDSBA4_32_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21573..22601
-----------------
DNA (1029bp)
protein (343aa)
rod shape-determining protein MreB
Rod shape-determining protein MreB n=2 Tax=Sulfobacillus acidophilus RepID=G8U0E8_9FIRM (db=UNIREF evalue=4.2e-120 bit_score=436.8 identity=68.0 coverage=95.33527696793003)
mreB: cell shape determining protein, MreB/M (db=HMMTigr db_id=TIGR00904 from=10 to=335 evalue=7.9e-153 interpro_id=IPR004753 interpro_description=Cell shape determining protein MreB/Mrl GO=Biological Process: cell morphogenesis (GO:0000902))
(db=HMMPfam db_id=PF06723 from=10 to=331 evalue=9.0e-129 interpro_id=IPR004753 interpro_description=Cell shape determining protein MreB/Mrl GO=Biological Process: cell morphogenesis (GO:0000902))
AMDSBA4_32_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23525..25222
-----------------
DNA (1698bp)
protein (566aa)
potassium-transporting ATPase subunit A
potassium-transporting ATPase subunit A
Potassium-transporting ATPase A chain n=11 Tax=Enterobacteriaceae RepID=ATKA_KLEP3 (db=UNIREF evalue=2.6e-127 bit_score=461.5 identity=43.7 coverage=97.1731448763251)
seg (db=Seg db_id=seg from=169 to=195)
AMDSBA4_32_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25253..27277
-----------------
DNA (2025bp)
protein (675aa)
potassium-transporting ATPase subunit B (EC:3.6.3.4)
Potassium-transporting ATPase B chain n=2 Tax=Sulfobacillus acidophilus RepID=G8TY77_9FIRM (db=UNIREF evalue=4.2e-273 bit_score=946.0 identity=74.2 coverage=96.88888888888889)
seg (db=Seg db_id=seg from=38 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=251 to=273)
AMDSBA4_32_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27294..27911
-----------------
DNA (618bp)
protein (206aa)
kdpC; potassium-transporting ATPase subunit C
Potassium-transporting ATPase C chain n=2 Tax=Bacteroides RepID=B3JGI2_9BACE (db=UNIREF evalue=4.2e-22 bit_score=110.5 identity=33.0 coverage=91.2621359223301)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
H(+)/K(+)-transporting ATPase, subunit C (db=HMMPIR db_id=PIRSF001296 from=1 to=201 evalue=2.9e-70 interpro_id=IPR003820 interpro_description=Potassium transporting ATPase, C subunit GO=Biological Process: potassium ion transport (GO:0006813), Molecular Function: potassium-transporting ATPase activity (GO:0008556), Cellular Component: membrane (GO:0016020))
AMDSBA4_32_27
unknown

Not on your lists

27924..28433
-----------------
DNA (510bp)
protein (170aa)
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=1 to=139 evalue=2.2e-14)
(db=HMMPfam db_id=PF00582 from=1 to=139 evalue=7.2e-12 interpro_id=IPR006016 interpro_description=UspA GO=Biological Process: response to stress (GO:0006950))
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=1 to=143 evalue=9.3e-11 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
AMDSBA4_32_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29085..29507
-----------------
DNA (423bp)
protein (141aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=114)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=37)
seg (db=Seg db_id=seg from=25 to=35)
AMDSBA4_32_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29522..30853
-----------------
DNA (1332bp)
protein (444aa)
citrate transporter
Uncharacterized transporter YfbS n=409 Tax=Bacteria RepID=YFBS_ECO57 (db=UNIREF evalue=9.9e-37 bit_score=160.2 identity=26.7 coverage=99.32432432432432)
transmembrane_regions (db=TMHMM db_id=tmhmm from=358 to=377)
transmembrane_regions (db=TMHMM db_id=tmhmm from=329 to=351)
AMDSBA4_32_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31136..32020
-----------------
DNA (885bp)
protein (295aa)
cytochrome oxidase assembly
seg (db=Seg db_id=seg from=121 to=144)
transmembrane_regions (db=TMHMM db_id=tmhmm from=222 to=244)
transmembrane_regions (db=TMHMM db_id=tmhmm from=188 to=210)
Displaying items 1-30 of 31 in total

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