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AMDSBA4_48

Alias: AMDSBA4_C47

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA4_48_1
Bacillus sp. 2_A_57_CT2, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1..1332
-----------------
DNA (1332bp)
protein (444aa)
Dihydroorotase n=1 Tax=Bacillus sp. 2_A_57_CT2 RepID=E5WNF6_9BACI (db=UNIREF evalue=2.6e-162 bit_score=577.4 identity=60.9 coverage=99.54954954954955)
allB; allantoinase (EC:3.5.2.5)
allB; allantoinase (EC:3.5.2.5)
seg (db=Seg db_id=seg from=51 to=65)
AMDSBA4_48_2
Bacillus firmus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1357..1851
-----------------
DNA (495bp)
protein (165aa)
Isochorismatase n=1 Tax=Bacillus sp. 2_A_57_CT2 RepID=E5WNF5_9BACI (db=UNIREF evalue=2.6e-59 bit_score=233.8 identity=75.2 coverage=84.84848484848484)
isochorismatase
no description (db=Gene3D db_id=G3DSA:3.40.50.850 from=4 to=146 evalue=1.3e-45 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=1 to=146 evalue=2.6e-45 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA4_48_3
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2077..2625
-----------------
DNA (549bp)
protein (183aa)
CheY-like (db=superfamily db_id=SSF52172 from=15 to=178 evalue=1.9e-18 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
(db=HMMPfam db_id=PF03861 from=126 to=177 evalue=1.4e-13 interpro_id=IPR005561 interpro_description=ANTAR domain GO=Molecular Function: RNA binding (GO:0003723))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=125 to=178 evalue=1.7e-09 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ANTAR (db=ProfileScan db_id=PS50921 from=117 to=178 evalue=15.413 interpro_id=IPR005561 interpro_description=ANTAR domain GO=Molecular Function: RNA binding (GO:0003723))
AMDSBA4_48_4
Paenibacillus stellifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2646..3218
-----------------
DNA (573bp)
protein (191aa)
aromatic acid decarboxylase
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Halorhodospira halophila SL1 RepID=A1WYL0_HALHL (db=UNIREF evalue=2.2e-33 bit_score=147.9 identity=41.5 coverage=93.717277486911)
ubiX_pad: polyprenyl P-hydroxybenzoate and p (db=HMMTigr db_id=TIGR00421 from=2 to=181 evalue=5.4e-71 interpro_id=IPR004507 interpro_description=Phenylacrylic acid decarboxylase GO=Molecular Function: carboxy-lyase activity (GO:0016831))
no description (db=Gene3D db_id=G3DSA:3.40.50.1950 from=1 to=183 evalue=3.5e-65 interpro_id=IPR003382 interpro_description=Flavoprotein GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA4_48_5
Bacillus firmus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3253..4599
-----------------
DNA (1347bp)
protein (449aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase rbh
UbiD family decarboxylase n=2 Tax=Desulfotomaculum RepID=F6B8R3_DESCC (db=UNIREF evalue=1.9e-91 bit_score=342.0 identity=42.0 coverage=99.10913140311804)
seg (db=Seg db_id=seg from=364 to=375)
(db=HMMPfam db_id=PF01977 from=12 to=402 evalue=1.6e-100 interpro_id=IPR002830 interpro_description=Carboxylyase-related GO=Cellular Component: plasma membrane (GO:0005886), Biological Process: ubiquinone biosynthetic process (GO:0006744), Molecular Function: carboxy-lyase activity (GO:0016831))
AMDSBA4_48_6
Paenibacillus sp. FSL R5-0912, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4631..4930
-----------------
DNA (300bp)
protein (100aa)
hypothetical protein
PduJ protein n=1 Tax=Bacillus sp. 2_A_57_CT2 RepID=E5WNF2_9BACI (db=UNIREF evalue=5.0e-21 bit_score=105.9 identity=62.2 coverage=81.0)
seg (db=Seg db_id=seg from=55 to=74)
BACT_MICROCOMP (db=PatternScan db_id=PS01139 from=30 to=49 evalue=0.0 interpro_id=IPR020808 interpro_description=Bacterial microcompartments protein, conserved site)
AMDSBA4_48_7
unknown

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4989..5879
-----------------
DNA (891bp)
protein (297aa)
seg (db=Seg db_id=seg from=102 to=116)
AMDSBA4_48_8
Bacillus firmus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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5893..6315
-----------------
DNA (423bp)
protein (141aa)
microcompartment protein
CcmK-like (db=superfamily db_id=SSF143414 from=1 to=103 evalue=2.1e-23)
(db=HMMPfam db_id=PF00936 from=2 to=82 evalue=2.1e-17 interpro_id=IPR000249 interpro_description=Microcompartment protein, bacteria)
no description (db=HMMSmart db_id=SM00877 from=2 to=82 evalue=6.9e-17 interpro_id=IPR000249 interpro_description=Microcompartment protein, bacteria)
AMDSBA4_48_9
Paenibacillus stellifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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6308..6613
-----------------
DNA (306bp)
protein (102aa)
carboxysome structural protein EutM
Putative uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NTL3_9FIRM (db=UNIREF evalue=1.8e-26 bit_score=124.0 identity=78.0 coverage=79.41176470588235)
seg (db=Seg db_id=seg from=52 to=64)
no description (db=HMMSmart db_id=SM00877 from=3 to=79 evalue=8.5e-33 interpro_id=IPR000249 interpro_description=Microcompartment protein, bacteria)
AMDSBA4_48_10
unknown

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6635..7360
-----------------
DNA (726bp)
protein (242aa)
6635..7360 + ( gc_cont=0.573)
AMDSBA4_48_11
Paenibacillus stellifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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7342..7620
-----------------
DNA (279bp)
protein (93aa)
Putative uncharacterized protein n=1 Tax=Bacillus sp. 2_A_57_CT2 RepID=E5WNE7_9BACI (db=UNIREF evalue=1.3e-18 bit_score=97.8 identity=53.4 coverage=93.54838709677419)
seg (db=Seg db_id=seg from=74 to=90)
(db=HMMPfam db_id=PF03319 from=1 to=83 evalue=5.5e-30 interpro_id=IPR004992 interpro_description=Ethanolamine utilization protein EutN/carboxysome structural protein Ccml)
Q3CBF0_9CLOT_Q3CBF0; (db=BlastProDom db_id=PD012510 from=12 to=73 evalue=3.0e-08 interpro_id=IPR004992 interpro_description=Ethanolamine utilization protein EutN/carboxysome structural protein Ccml)
AMDSBA4_48_12
Bacillus firmus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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7617..9455
-----------------
DNA (1839bp)
protein (613aa)
adenine deaminase
Adenine deaminase n=3 Tax=Desulfitobacterium hafniense RepID=ADEC_DESHY (db=UNIREF evalue=3.5e-77 bit_score=295.0 identity=33.3 coverage=88.25448613376835)
seg (db=Seg db_id=seg from=250 to=261)
ade: adenine deaminase (db=HMMTigr db_id=TIGR01178 from=33 to=609 evalue=8.7e-138 interpro_id=IPR006679 interpro_description=Adenine deaminase GO=Molecular Function: adenine deaminase activity (GO:0000034), Biological Process: adenine catabolic process (GO:0006146))
AMDSBA4_48_13
Bacillus sp. 2_A_57_CT2, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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9474..10163
-----------------
DNA (690bp)
protein (230aa)
Cyclase n=1 Tax=Bacillus sp. 2_A_57_CT2 RepID=E5WNE5_9BACI (db=UNIREF evalue=3.0e-90 bit_score=337.0 identity=66.5 coverage=98.26086956521739)
cyclase rbh
cyclase rbh
AMDSBA4_48_14
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(10379..11839)
-----------------
DNA (1461bp)
protein (487aa)
cytosine/purines uracil thiamine allantoin permease
Cytosine/purine/uracil/thiamine/allantoin permease n=2 Tax=Rhodococcus equi RepID=E9T7G8_COREQ (db=UNIREF evalue=2.8e-40 bit_score=172.2 identity=31.0 coverage=89.73305954825463)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
seg (db=Seg db_id=seg from=361 to=374)
AMDSBA4_48_15
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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12205..12795
-----------------
DNA (591bp)
protein (197aa)
CheY-like (db=superfamily db_id=SSF52172 from=20 to=192 evalue=1.8e-20 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
(db=HMMPfam db_id=PF03861 from=140 to=192 evalue=1.0e-15 interpro_id=IPR005561 interpro_description=ANTAR domain GO=Molecular Function: RNA binding (GO:0003723))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=139 to=192 evalue=2.6e-11 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ANTAR (db=ProfileScan db_id=PS50921 from=131 to=192 evalue=16.908 interpro_id=IPR005561 interpro_description=ANTAR domain GO=Molecular Function: RNA binding (GO:0003723))
AMDSBA4_48_16
unknown

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13016..13471
-----------------
DNA (456bp)
protein (152aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=120 to=142)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
AMDSBA4_48_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13508..14773)
-----------------
DNA (1266bp)
protein (422aa)
hutI; imidazolonepropionase
Imidazolonepropionase n=2 Tax=Sulfobacillus acidophilus RepID=G8TVM1_9FIRM (db=UNIREF evalue=8.9e-104 bit_score=382.9 identity=48.7 coverage=95.260663507109)
seg (db=Seg db_id=seg from=137 to=142)
AMDSBA4_48_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15114..15989
-----------------
DNA (876bp)
protein (292aa)
seg (db=Seg db_id=seg from=261 to=280)
coiled-coil (db=Coil db_id=coil from=256 to=277 evalue=NA)
(db=HMMPfam db_id=PF01418 from=13 to=84 evalue=5.2e-15 interpro_id=IPR000281 interpro_description=Helix-turn-helix protein RpiR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
SIS domain (db=superfamily db_id=SSF53697 from=97 to=263 evalue=4.7e-13)
AMDSBA4_48_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16002..17252
-----------------
DNA (1251bp)
protein (417aa)
amidase (EC:3.5.1.87)
Uncharacterized protein n=1 Tax=Caenorhabditis japonica RepID=H2X5N6_CAEJA (db=UNIREF evalue=1.2e-47 bit_score=196.4 identity=34.5 coverage=89.92805755395683)
Amidase, hydantoinase/carbamoylase type (db=HMMPIR db_id=PIRSF001235 from=1 to=410 evalue=2.5e-121 interpro_id=IPR010158 interpro_description=Amidase, hydantoinase/carbamoylase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines (GO:0016813))
hydantase: amidase, hydantoinase/carbamoyla (db=HMMTigr db_id=TIGR01879 from=8 to=405 evalue=5.5e-90 interpro_id=IPR010158 interpro_description=Amidase, hydantoinase/carbamoylase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines (GO:0016813))
AMDSBA4_48_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17246..18580
-----------------
DNA (1335bp)
protein (445aa)
hypothetical protein
hypothetical protein
S-adenosylhomocysteine deaminase n=2 Tax=Sulfobacillus acidophilus RepID=G8TVL6_9FIRM (db=UNIREF evalue=5.4e-144 bit_score=516.5 identity=58.9 coverage=98.65168539325843)
AMDSBA4_48_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18614..20305
-----------------
DNA (1692bp)
protein (564aa)
urocanate hydratase (EC:4.2.1.49) rbh
urocanate hydratase (EC:4.2.1.49) rbh
Urocanate hydratase n=2 Tax=Sulfobacillus acidophilus RepID=G8TVL5_9FIRM (db=UNIREF evalue=6.5e-251 bit_score=872.1 identity=75.9 coverage=98.58156028368793)
coiled-coil (db=Coil db_id=coil from=294 to=315 evalue=NA)
Displaying 21 items

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